MS009081 (gene) Bitter gourd (TR) v1

Overview
NameMS009081
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold687: 361735 .. 361953 (+)
RNA-Seq ExpressionMS009081
SyntenyMS009081
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTCTGCTTTTGTTCTCTCTGCTCCTCATGCCCGTGTTTCTGCCCGCGAGCTCTAATTTTGCGGTCGAAAGTAGAGCGCTACGGGTCGACACGGTGGATGGCTCCGATGGTGGTGGTGGTGGAAGGGACGACATGTCGGATCGGCGGGAGTTACTGGATGATCGGGTTTTCACGTTGGCGTCGGGGCCCAGCAGGAAGGGAGATGGGCATAAG

mRNA sequence

ATGAAGCTTCTGCTTTTGTTCTCTCTGCTCCTCATGCCCGTGTTTCTGCCCGCGAGCTCTAATTTTGCGGTCGAAAGTAGAGCGCTACGGGTCGACACGGTGGATGGCTCCGATGGTGGTGGTGGTGGAAGGGACGACATGTCGGATCGGCGGGAGTTACTGGATGATCGGGTTTTCACGTTGGCGTCGGGGCCCAGCAGGAAGGGAGATGGGCATAAG

Coding sequence (CDS)

ATGAAGCTTCTGCTTTTGTTCTCTCTGCTCCTCATGCCCGTGTTTCTGCCCGCGAGCTCTAATTTTGCGGTCGAAAGTAGAGCGCTACGGGTCGACACGGTGGATGGCTCCGATGGTGGTGGTGGTGGAAGGGACGACATGTCGGATCGGCGGGAGTTACTGGATGATCGGGTTTTCACGTTGGCGTCGGGGCCCAGCAGGAAGGGAGATGGGCATAAG

Protein sequence

MKLLLLFSLLLMPVFLPASSNFAVESRALRVDTVDGSDGGGGGRDDMSDRRELLDDRVFTLASGPSRKGDGHK
Homology
BLAST of MS009081 vs. NCBI nr
Match: KAG6571236.1 (hypothetical protein SDJN03_30151, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 4  LLLFSLLLMPVFLPASSNFAVESRALRVDT------VDGSDGGGGGRDDMSDRRELLDDR 63
          L L SLLL+P+ LPA+S   +  RAL+ ++      +   DGGGGG +      ++ + R
Sbjct: 6  LCLLSLLLLPLLLPATSTSLLHRRALQANSDAHEFKLKPKDGGGGGNEGGGGGFDMSNQR 65

Query: 64 VFTLASGPSRKGDGHK 74
          VFTLASGPSR+GDGHK
Sbjct: 66 VFTLASGPSRRGDGHK 81

BLAST of MS009081 vs. NCBI nr
Match: KGN63303.1 (hypothetical protein Csa_022628 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-04
Identity = 42/92 (45.65%), Postives = 50/92 (54.35%), Query Frame = 0

Query: 1   MKLLLLFSLLLMPVFLP-ASSNFAVESRALRVD-TVD-----------------GSDGGG 60
           M+ L L SLLL+P+ LP  +SN  V  RAL+ D TV+                 G D GG
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDDGGGDSGG 109

Query: 61  GGRDDMSDRRELLDDRVFTLASGPSRKGDGHK 74
           GG D         + RVFTLASGPSR+GDGHK
Sbjct: 110 GGSDTS-------NQRVFTLASGPSRRGDGHK 134

BLAST of MS009081 vs. ExPASy TrEMBL
Match: A0A0A0LNA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 42/92 (45.65%), Postives = 50/92 (54.35%), Query Frame = 0

Query: 1   MKLLLLFSLLLMPVFLP-ASSNFAVESRALRVD-TVD-----------------GSDGGG 60
           M+ L L SLLL+P+ LP  +SN  V  RAL+ D TV+                 G D GG
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRALQPDATVEIGSHAHEFKLKPKDDDGGGDSGG 109

Query: 61  GGRDDMSDRRELLDDRVFTLASGPSRKGDGHK 74
           GG D         + RVFTLASGPSR+GDGHK
Sbjct: 110 GGSDTS-------NQRVFTLASGPSRRGDGHK 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571236.11.1e-0647.37hypothetical protein SDJN03_30151, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN63303.12.3e-0445.65hypothetical protein Csa_022628 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LNA91.1e-0445.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS009081.1MS009081.1mRNA