MS008981 (gene) Bitter gourd (TR) v1

Overview


Name	MS008981
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold399: 309671 .. 309918 (+)
RNA-Seq Expression	MS008981
Synteny	MS008981

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCGAATCCTTTTGAAAGAGAGGGGTGCCTTGGGGAACGCGGACACAAGTGGTGCATGGCTGTTGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTTCCGCAACGAGTGCAACCCTCGTGTTTAGTTGCCAAGCGTTGAGGTTGGTACCCTGAGTTGACTGCTGATGATAAGTCGGAGGAAGGTGGGGATGATGTAAAGTTATCATGCCCCTTATACCTTGGGCGACACACGTGCTACAATGGC

mRNA sequence

ATGCCGCGAATCCTTTTGAAAGAGAGGGGTGCCTTGGGGAACGCGGACACAAGTGGTGCATGGCTGTTGTCAGCTCGTGCCTTGACTGCTGATGATAAGTCGGAGGAAGGTGGGGATGATGTAAAGTTATCATGCCCCTTATACCTTGGGCGACACACGTGCTACAATGGC

Coding sequence (CDS)

ATGCCGCGAATCCTTTTGAAAGAGAGGGGTGCCTTGGGGAACGCGGACACAAGTGGTGCATGGCTGTTGTCAGCTCGTGCCTTGACTGCTGATGATAAGTCGGAGGAAGGTGGGGATGATGTAAAGTTATCATGCCCCTTATACCTTGGGCGACACACGTGCTACAATGGC

Protein sequence

MPRILLKERGALGNADTSGAWLLSARALTADDKSEEGGDDVKLSCPLYLGRHTCYNG

Homology

[Close]

BLAST of MS008981 vs. NCBI nr
Match: XP_027773552.1 (uncharacterized protein LOC114077576 [Solanum pennellii])

HSP 1 Score: 94.7 bits (234), Expect = 2.7e-16
Identity = 47/60 (78.33%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1  MPRILLKERGALGNADTSGAWLLSARAL---TADDKSEEGGDDVKLSCPLYLGRHTCYNG 58
          MPRILLKERGA GNADT GAWL SARA+   TA DK EEG DDVK SCPL  GRHTCYNG
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARAVRCWTAGDKPEEGEDDVKSSCPLCPGRHTCYNG 60

[Close]

BLAST of MS008981 vs. NCBI nr
Match: XP_027337204.1 (uncharacterized protein LOC113850851 [Abrus precatorius])

HSP 1 Score: 94.7 bits (234), Expect = 2.7e-16
Identity = 47/60 (78.33%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1  MPRILLKERGALGNADTSGAWLLSARAL---TADDKSEEGGDDVKLSCPLYLGRHTCYNG 58
          MPRILLKERGA GNADT GAWL SARA+   TA DK EEG DDVK SCPL  GRHTCYNG
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARAVRCWTAGDKPEEGEDDVKSSCPLCPGRHTCYNG 60

[Close]

BLAST of MS008981 vs. NCBI nr
Match: KAF8091076.1 (hypothetical protein N665_0454s0017 [Sinapis alba])

HSP 1 Score: 94.7 bits (234), Expect = 2.7e-16
Identity = 47/57 (82.46%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MPRILLKERGALGNADTSGAWLLSARALTADDKSEEGGDDVKLSCPLYLGRHTCYNG 58
          MPRILLKERGA GNADT GAWL SARA TA DK EEG DDVK SCPL  GRHTCYNG
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARA-TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 56

[Close]

BLAST of MS008981 vs. NCBI nr
Match: PPR83386.1 (hypothetical protein GOBAR_AA37328 [Gossypium barbadense])

HSP 1 Score: 94.7 bits (234), Expect = 2.7e-16
Identity = 47/57 (82.46%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1   MPRILLKERGALGNADTSGAWLLSARALTADDKSEEGGDDVKLSCPLYLGRHTCYNG 58
           MPRILLKERGA GNADT GAWL SARA TA DK EEG DDVK SCPL  GRHTCYNG
Sbjct: 89  MPRILLKERGAFGNADTGGAWLSSARA-TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 144

[Close]

BLAST of MS008981 vs. NCBI nr
Match: KAG9438578.1 (hypothetical protein H6P81_021473 [Aristolochia fimbriata] >KAG9438583.1 hypothetical protein H6P81_021478 [Aristolochia fimbriata] >KAG9438623.1 hypothetical protein H6P81_021428 [Aristolochia fimbriata] >KAG9438699.1 hypothetical protein H6P81_021358 [Aristolochia fimbriata] >KAG9438779.1 hypothetical protein H6P81_021259 [Aristolochia fimbriata])

HSP 1 Score: 94.7 bits (234), Expect = 2.7e-16
Identity = 47/57 (82.46%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1   MPRILLKERGALGNADTSGAWLLSARALTADDKSEEGGDDVKLSCPLYLGRHTCYNG 58
           MPRILLKERGA GNADT GAWL SARA TA DK EEG DDVK SCPL  GRHTCYNG
Sbjct: 82  MPRILLKERGAFGNADTGGAWLSSARA-TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 137

[Close]

BLAST of MS008981 vs. ExPASy TrEMBL
Match: A0A2J6LN37 (Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_4X63021 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 47/57 (82.46%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MPRILLKERGALGNADTSGAWLLSARALTADDKSEEGGDDVKLSCPLYLGRHTCYNG 58
          MPRILLKERGA GNADT GAWL SARA TA DK EEG DDVK SCPL  GRHTCYNG
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARA-TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 56

[Close]

BLAST of MS008981 vs. ExPASy TrEMBL
Match: A0A6D2L9K1 (Uncharacterized protein ycf68 OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS26117 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 47/57 (82.46%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MPRILLKERGALGNADTSGAWLLSARALTADDKSEEGGDDVKLSCPLYLGRHTCYNG 58
          MPRILLKERGA GNADT GAWL SARA TA DK EEG DDVK SCPL  GRHTCYNG
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARA-TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 56

[Close]

BLAST of MS008981 vs. ExPASy TrEMBL
Match: A0A3P6H607 (Uncharacterized protein ycf68 OS=Brassica oleracea OX=3712 GN=BOLSC44T60812H PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 47/57 (82.46%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MPRILLKERGALGNADTSGAWLLSARALTADDKSEEGGDDVKLSCPLYLGRHTCYNG 58
          MPRILLKERGA GNADT GAWL SARA TA DK EEG DDVK SCPL  GRHTCYNG
Sbjct: 1  MPRILLKERGAFGNADTGGAWLSSARA-TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 56

[Close]

BLAST of MS008981 vs. ExPASy TrEMBL
Match: A0A6A5MVI7 (Uncharacterized protein ycf68 OS=Lupinus albus OX=3870 GN=Lal_00033161 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 47/57 (82.46%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1   MPRILLKERGALGNADTSGAWLLSARALTADDKSEEGGDDVKLSCPLYLGRHTCYNG 58
           MPRILLKERGA GNADT GAWL SARA TA DK EEG DDVK SCPL  GRHTCYNG
Sbjct: 86  MPRILLKERGAFGNADTGGAWLSSARA-TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 141

[Close]

BLAST of MS008981 vs. ExPASy TrEMBL
Match: A0A4P1QSZ5 (Uncharacterized protein ycf68 OS=Lupinus angustifolius OX=3871 GN=TanjilG_00025 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 47/57 (82.46%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1   MPRILLKERGALGNADTSGAWLLSARALTADDKSEEGGDDVKLSCPLYLGRHTCYNG 58
           MPRILLKERGA GNADT GAWL SARA TA DK EEG DDVK SCPL  GRHTCYNG
Sbjct: 179 MPRILLKERGAFGNADTGGAWLSSARA-TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 234

The following BLAST results are available for this feature:

BLAST of MS008981 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027773552.1	2.7e-16	78.33	uncharacterized protein LOC114077576 [Solanum pennellii]	[more]
XP_027337204.1	2.7e-16	78.33	uncharacterized protein LOC113850851 [Abrus precatorius]	[more]
KAF8091076.1	2.7e-16	82.46	hypothetical protein N665_0454s0017 [Sinapis alba]	[more]
PPR83386.1	2.7e-16	82.46	hypothetical protein GOBAR_AA37328 [Gossypium barbadense]	[more]
KAG9438578.1	2.7e-16	82.46	hypothetical protein H6P81_021473 [Aristolochia fimbriata] >KAG9438583.1 hypothe...	[more]

BLAST of MS008981 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS008981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2J6LN37	1.3e-16	82.46	Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_4X63021 PE=3 SV=...	[more]
A0A6D2L9K1	1.3e-16	82.46	Uncharacterized protein ycf68 OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS...	[more]
A0A3P6H607	1.3e-16	82.46	Uncharacterized protein ycf68 OS=Brassica oleracea OX=3712 GN=BOLSC44T60812H PE=...	[more]
A0A6A5MVI7	1.3e-16	82.46	Uncharacterized protein ycf68 OS=Lupinus albus OX=3870 GN=Lal_00033161 PE=3 SV=1	[more]
A0A4P1QSZ5	1.3e-16	82.46	Uncharacterized protein ycf68 OS=Lupinus angustifolius OX=3871 GN=TanjilG_00025 ...	[more]

BLAST of MS008981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 55..57
None	No IPR available	PANTHER	PTHR34890:SF13	YCF68 PROTEIN	coord: 1..57
IPR022546	Uncharacterised protein family Ycf68	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008981.1	MS008981.1	mRNA