MS008928 (gene) Bitter gourd (TR) v1

Overview
NameMS008928
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase
Locationscaffold446: 9949 .. 10167 (-)
RNA-Seq ExpressionMS008928
SyntenyMS008928
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAACGGTCCATCTCGTCGTGACATTCTCTTGAATTCTCAAAATTTCTGCCGCTTCATCCCCGCAGGGACAGAGAACTCATCGCTGTCTTGGCTGTGCTACCGAAGGTGTTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGAGATGGGCTTACTACTTAGATGCTTTCAGCAATTATCCGCTCCACACTTGGCTATCCAGAGTTTACCATGGG

mRNA sequence

ATGATAAACGGTCCATCTCGTCGTGACATTCTCTTGAATTCTCAAAATTTCTGCCGCTTCATCCCCGCAGGGACAGAGAACTCATCGCTGTCTTGGCTGTGCTACCGAAGGTGTTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGAGATGGGCTTACTACTTAGATGCTTTCAGCAATTATCCGCTCCACACTTGGCTATCCAGAGTTTACCATGGG

Coding sequence (CDS)

ATGATAAACGGTCCATCTCGTCGTGACATTCTCTTGAATTCTCAAAATTTCTGCCGCTTCATCCCCGCAGGGACAGAGAACTCATCGCTGTCTTGGCTGTGCTACCGAAGGTGTTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGAGATGGGCTTACTACTTAGATGCTTTCAGCAATTATCCGCTCCACACTTGGCTATCCAGAGTTTACCATGGG

Protein sequence

MINGPSRRDILLNSQNFCRFIPAGTENSSLSWLCYRRCWGSRNRRALILRWAYYLDAFSNYPLHTWLSRVYHG
Homology
[Close]
BLAST of MS008928 vs. NCBI nr
Match: KZM97703.1 (hypothetical protein DCAR_014935 [Daucus carota subsp. sativus])

HSP 1 Score: 133.7 bits (335), Expect = 6.6e-28
Identity = 61/73 (83.56%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 1  MINGPSRRDILLNSQNFCRFIPAGTENSSLSWLCYRRCWGSRNRRALILRWAYYLDAFSN 60
          MING SRRD+LLNSQNFCR IPAG EN SLSWLCYRR WGSRNRRALIL WAYYLDAFS+
Sbjct: 1  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLHTWLSRVYHG 74
          YPL TWL  VY G
Sbjct: 61 YPLRTWLPSVYRG 73

[Close]
BLAST of MS008928 vs. NCBI nr
Match: CAB4265714.1 (unnamed protein product [Prunus armeniaca] >CAB4269448.1 unnamed protein product [Prunus armeniaca] >CAB4289458.1 unnamed protein product [Prunus armeniaca] >CAB4299869.1 unnamed protein product [Prunus armeniaca] >CAB4320143.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1   MINGPSRRDILLNSQNFCRFIPAGTENSSLSWLCYRRCWGSRNRRALILRWAYYLDAFSN 60
           MING SRRD+LLNSQNFCR  PAG EN SLSWLCYRR WGSRNRRALIL WAYYLDAFS+
Sbjct: 43  MINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLHTWLSRVYHG 74
           YPL TWL  VY G
Sbjct: 103 YPLRTWLPSVYRG 115

[Close]
BLAST of MS008928 vs. NCBI nr
Match: VVA40906.1 (PREDICTED: cell wall-associated hydrolase [Prunus dulcis])

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1   MINGPSRRDILLNSQNFCRFIPAGTENSSLSWLCYRRCWGSRNRRALILRWAYYLDAFSN 60
           MING SRRD+LLNSQNFCR  PAG EN SLSWLCYRR WGSRNRRALIL WAYYLDAFS+
Sbjct: 43  MINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLHTWLSRVYHG 74
           YPL TWL  VY G
Sbjct: 103 YPLRTWLPSVYRG 115

[Close]
BLAST of MS008928 vs. NCBI nr
Match: CAB4269449.1 (unnamed protein product [Prunus armeniaca] >CAB4284031.1 unnamed protein product [Prunus armeniaca] >CAB4314312.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1   MINGPSRRDILLNSQNFCRFIPAGTENSSLSWLCYRRCWGSRNRRALILRWAYYLDAFSN 60
           MING SRRD+LLNSQNFCR  PAG EN SLSWLCYRR WGSRNRRALIL WAYYLDAFS+
Sbjct: 43  MINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLHTWLSRVYHG 74
           YPL TWL  VY G
Sbjct: 103 YPLRTWLPSVYRG 115

[Close]
BLAST of MS008928 vs. NCBI nr
Match: KAF3449793.1 (hypothetical protein FNV43_RR05871 [Rhamnella rubrinervis])

HSP 1 Score: 130.6 bits (327), Expect = 5.6e-27
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1   MINGPSRRDILLNSQNFCRFIPAGTENSSLSWLCYRRCWGSRNRRALILRWAYYLDAFSN 60
           MING SRRD+LLNSQNFCR  PAG EN SLSWLCYR+ WGSRNRRALIL WAYYLDAFS+
Sbjct: 43  MINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRKLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLHTWLSRVYHG 74
           YPL TWL  VY G
Sbjct: 103 YPLRTWLPSVYRG 115

[Close]
BLAST of MS008928 vs. ExPASy TrEMBL
Match: A0A165WVC1 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014935 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.2e-28
Identity = 61/73 (83.56%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 1  MINGPSRRDILLNSQNFCRFIPAGTENSSLSWLCYRRCWGSRNRRALILRWAYYLDAFSN 60
          MING SRRD+LLNSQNFCR IPAG EN SLSWLCYRR WGSRNRRALIL WAYYLDAFS+
Sbjct: 1  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLHTWLSRVYHG 74
          YPL TWL  VY G
Sbjct: 61 YPLRTWLPSVYRG 73

[Close]
BLAST of MS008928 vs. ExPASy TrEMBL
Match: A0A6J5TQC5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS15014 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1   MINGPSRRDILLNSQNFCRFIPAGTENSSLSWLCYRRCWGSRNRRALILRWAYYLDAFSN 60
           MING SRRD+LLNSQNFCR  PAG EN SLSWLCYRR WGSRNRRALIL WAYYLDAFS+
Sbjct: 43  MINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLHTWLSRVYHG 74
           YPL TWL  VY G
Sbjct: 103 YPLRTWLPSVYRG 115

[Close]
BLAST of MS008928 vs. ExPASy TrEMBL
Match: A0A6J5XQ66 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS15013 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1   MINGPSRRDILLNSQNFCRFIPAGTENSSLSWLCYRRCWGSRNRRALILRWAYYLDAFSN 60
           MING SRRD+LLNSQNFCR  PAG EN SLSWLCYRR WGSRNRRALIL WAYYLDAFS+
Sbjct: 43  MINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLHTWLSRVYHG 74
           YPL TWL  VY G
Sbjct: 103 YPLRTWLPSVYRG 115

[Close]
BLAST of MS008928 vs. ExPASy TrEMBL
Match: A0A5E4GMM3 (PREDICTED: cell wall-associated hydrolase OS=Prunus dulcis OX=3755 GN=ALMOND_2B015387 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1   MINGPSRRDILLNSQNFCRFIPAGTENSSLSWLCYRRCWGSRNRRALILRWAYYLDAFSN 60
           MING SRRD+LLNSQNFCR  PAG EN SLSWLCYRR WGSRNRRALIL WAYYLDAFS+
Sbjct: 43  MINGSSRRDLLLNSQNFCRSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLHTWLSRVYHG 74
           YPL TWL  VY G
Sbjct: 103 YPLRTWLPSVYRG 115

[Close]
BLAST of MS008928 vs. ExPASy TrEMBL
Match: W9RPF7 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018827 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.6e-27
Identity = 59/73 (80.82%), Postives = 61/73 (83.56%), Query Frame = 0 

Query: 1  MINGPSRRDILLNSQNFCRFIPAGTENSSLSWLCYRRCWGSRNRRALILRWAYYLDAFSN 60
          MING SRRD+LLNSQNFC   PAG EN SLSWLCYRR WGSRNRRALIL WAYYLDAFS+
Sbjct: 1  MINGSSRRDLLLNSQNFCHSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLHTWLSRVYHG 74
          YPL TWL  VY G
Sbjct: 61 YPLRTWLPSVYRG 73

The following BLAST results are available for this feature:
BLAST of MS008928 vs. NCBI nr
Match NameE-valueIdentityDescription
KZM97703.16.6e-2883.56hypothetical protein DCAR_014935 [Daucus carota subsp. sativus][more]
CAB4265714.12.5e-2782.19unnamed protein product [Prunus armeniaca] >CAB4269448.1 unnamed protein product... [more]
VVA40906.12.5e-2782.19PREDICTED: cell wall-associated hydrolase [Prunus dulcis][more]
CAB4269449.12.5e-2782.19unnamed protein product [Prunus armeniaca] >CAB4284031.1 unnamed protein product... [more]
KAF3449793.15.6e-2780.82hypothetical protein FNV43_RR05871 [Rhamnella rubrinervis][more]
BLAST of MS008928 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS008928 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A165WVC13.2e-2883.56Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014935 ... [more]
A0A6J5TQC51.2e-2782.19Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS15014 PE=4 S... [more]
A0A6J5XQ661.2e-2782.19Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS15013 PE=4 S... [more]
A0A5E4GMM31.2e-2782.19PREDICTED: cell wall-associated hydrolase OS=Prunus dulcis OX=3755 GN=ALMOND_2B0... [more]
W9RPF74.6e-2780.82Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018827 PE=4 SV=1[more]
BLAST of MS008928 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS008928.1MS008928.1mRNA