MS008903 (gene) Bitter gourd (TR) v1

Overview


Name	MS008903
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	scaffold490: 151766 .. 151933 (-)
RNA-Seq Expression	MS008903
Synteny	MS008903

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTTCTTTCTTTGGACCCTTTGCTATAGGAGTCTAAATACCTCGGACAAAGTTCAAAGAAAGTTTCCAAATTGGTCCTTTTCCCCCTCCATTTGCAGGATGTGCTATGGGTCAAAGGAGTTTCTAGACCACCTTCTCCTTCTCTGCCCATTTCCGAGGAACTGGTGG

mRNA sequence

AGGTTCTTTCTTTGGACCCTTTGCTATAGGAGTCTAAATACCTCGGACAAAGTTCAAAGAAAGTTTCCAAATTGGTCCTTTTCCCCCTCCATTTGCAGGATGTGCTATGGGTCAAAGGAGTTTCTAGACCACCTTCTCCTTCTCTGCCCATTTCCGAGGAACTGGTGG

Coding sequence (CDS)

AGGTTCTTTCTTTGGACCCTTTGCTATAGGAGTCTAAATACCTCGGACAAAGTTCAAAGAAAGTTTCCAAATTGGTCCTTTTCCCCCTCCATTTGCAGGATGTGCTATGGGTCAAAGGAGTTTCTAGACCACCTTCTCCTTCTCTGCCCATTTCCGAGGAACTGGTGG

Protein sequence

RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW

Homology

[Close]

BLAST of MS008903 vs. NCBI nr
Match: TYK31299.1 (protein FAM91A1 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 6.3e-10
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 1   RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW 57
           +FFLW+L YRSLN  +K+QRKFPN S SPSIC +C    E  DHL L C F    W
Sbjct: 241 KFFLWSLAYRSLNIQNKLQRKFPNGSLSPSICYLCLKEAEAFDHLFLHCDFAFKGW 296

[Close]

BLAST of MS008903 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 9.0e-09
Identity = 24/56 (42.86%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1   RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW 57
           +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Sbjct: 787 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 842

[Close]

BLAST of MS008903 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 9.0e-09
Identity = 24/56 (42.86%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1   RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW 57
           +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Sbjct: 881 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 936

[Close]

BLAST of MS008903 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 9.0e-09
Identity = 24/56 (42.86%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1   RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW 57
           +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Sbjct: 332 KFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLW 387

[Close]

BLAST of MS008903 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 9.0e-09
Identity = 24/56 (42.86%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1   RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW 57
           +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Sbjct: 289 KFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLW 344

[Close]

BLAST of MS008903 vs. ExPASy TrEMBL
Match: A0A5D3E632 (Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005970 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-10
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 1   RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW 57
           +FFLW+L YRSLN  +K+QRKFPN S SPSIC +C    E  DHL L C F    W
Sbjct: 241 KFFLWSLAYRSLNIQNKLQRKFPNGSLSPSICYLCLKEAEAFDHLFLHCDFAFKGW 296

[Close]

BLAST of MS008903 vs. ExPASy TrEMBL
Match: A0A5A7UTI6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005580 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1   RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW 57
           +FF+WT+ ++ LNT DK+Q++ P+ S +PS C  C  S E ++HL + CPF RN W
Sbjct: 617 KFFIWTMVHQKLNTMDKIQKRNPSMSLNPSWCISCRSSNEDMNHLFIFCPFARNLW 672

[Close]

BLAST of MS008903 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 24/56 (42.86%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1    RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW 57
            +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Sbjct: 989  KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 1044

[Close]

BLAST of MS008903 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 24/56 (42.86%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1   RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW 57
           +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Sbjct: 881 KFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 936

[Close]

BLAST of MS008903 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 24/56 (42.86%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1   RFFLWTLCYRSLNTSDKVQRKFPNWSFSPSICRMCYGSKEFLDHLLLLCPFPRNWW 57
           +FF+WTL +  +NT+D++Q++ PNW+ SP+ C MC  S+E ++HL + CP+ +  W
Sbjct: 332 KFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLW 387

The following BLAST results are available for this feature:

BLAST of MS008903 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK31299.1	6.3e-10	57.14	protein FAM91A1 [Cucumis melo var. makuwa]	[more]
KAA0044556.1	9.0e-09	42.86	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	9.0e-09	42.86	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044451.1	9.0e-09	42.86	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK29578.1	9.0e-09	42.86	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of MS008903 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS008903 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E632	3.0e-10	57.14	Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0059...	[more]
A0A5A7UTI6	4.4e-09	46.43	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	4.4e-09	42.86	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	4.4e-09	42.86	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	4.4e-09	42.86	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MS008903 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 1..56 e-value: 6.8E-8 score: 33.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008903.1	MS008903.1	mRNA