MS008861 (gene) Bitter gourd (TR) v1

Overview
NameMS008861
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L31
Locationscaffold4: 4330876 .. 4331461 (+)
RNA-Seq ExpressionMS008861
SyntenyMS008861
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGAGTGGCCATGCGACAAGGCCTTGAAGAACTCATCTCCCAATTCTGCTCTTCCTCCCACTTATCCTCTCTTCATCGCACCCAAACGCAGCAATGGCGCTGAACCTAACAAATTCCTTCCTCCAACGGCGAATTTCCCCAGCCGTCGCGCCGGCGAAGAAGGTAATTTCCTTCTTCTCGCTCATCTATCTACTTAGACACACGATTATTTGCTTATTTTTCCCCCGATTTTGCGTTTGATGCCGTCATTTCCAGGAATTCGGAGCGAGAAGTCACCGGCCGGTGGTCACCTGCCGGAAGAAGGATCTCCACCCCCAATTCTACGAGGACGCTAAAGTTTATTGCAACGGGGAGCTGGTGATGACGACGGGTGGGACCCAGAAAGAGTATTCGGTGGATGTGTGGTCGGGAAATCACCCATTCTATTTGGGCAGCCGCTCCGCCCTGCTCATCGACGCCGACCAGGTCGAGAAGTTCCGCAAGAAATTCGGAGAGTTGTCGCAGTTGATGGAGATACCGGTGCTCAAAGGCGAAATCATTCTGCCCACTAAGCGCAAATCCGGCGGCAAAGGGAAGAAGAAG

mRNA sequence

ATGAGCGAGTGGCCATGCGACAAGGCCTTGAAGAACTCATCTCCCAATTCTGCTCTTCCTCCCACTTATCCTTCATCGCACCCAAACGCAGCAATGGCGCTGAACCTAACAAATTCCTTCCTCCAACGGCGAATTTCCCCAGCCGTCGCGCCGGCGAAGAAGGAATTCGGAGCGAGAAGTCACCGGCCGGTGGTCACCTGCCGGAAGAAGGATCTCCACCCCCAATTCTACGAGGACGCTAAAGTTTATTGCAACGGGGAGCTGGTGATGACGACGGGTGGGACCCAGAAAGAGTATTCGGTGGATGTGTGGTCGGGAAATCACCCATTCTATTTGGGCAGCCGCTCCGCCCTGCTCATCGACGCCGACCAGGTCGAGAAGTTCCGCAAGAAATTCGGAGAGTTGTCGCAGTTGATGGAGATACCGGTGCTCAAAGGCGAAATCATTCTGCCCACTAAGCGCAAATCCGGCGGCAAAGGGAAGAAGAAG

Coding sequence (CDS)

ATGAGCGAGTGGCCATGCGACAAGGCCTTGAAGAACTCATCTCCCAATTCTGCTCTTCCTCCCACTTATCCTTCATCGCACCCAAACGCAGCAATGGCGCTGAACCTAACAAATTCCTTCCTCCAACGGCGAATTTCCCCAGCCGTCGCGCCGGCGAAGAAGGAATTCGGAGCGAGAAGTCACCGGCCGGTGGTCACCTGCCGGAAGAAGGATCTCCACCCCCAATTCTACGAGGACGCTAAAGTTTATTGCAACGGGGAGCTGGTGATGACGACGGGTGGGACCCAGAAAGAGTATTCGGTGGATGTGTGGTCGGGAAATCACCCATTCTATTTGGGCAGCCGCTCCGCCCTGCTCATCGACGCCGACCAGGTCGAGAAGTTCCGCAAGAAATTCGGAGAGTTGTCGCAGTTGATGGAGATACCGGTGCTCAAAGGCGAAATCATTCTGCCCACTAAGCGCAAATCCGGCGGCAAAGGGAAGAAGAAG

Protein sequence

MSEWPCDKALKNSSPNSALPPTYPSSHPNAAMALNLTNSFLQRRISPAVAPAKKEFGARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLIDADQVEKFRKKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK
Homology
[Close]
BLAST of MS008861 vs. NCBI nr
Match: XP_022136375.1 (LOW QUALITY PROTEIN: 50S ribosomal protein L31, chloroplastic [Momordica charantia])

HSP 1 Score: 322.8 bits (826), Expect = 1.7e-84
Identity = 161/164 (98.17%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MSEWPCDKALKNSSPNSALPPTYP-SSHPNAAMALNLTNSFLQRRISPAVAPAKKEFGAR 60
           MSEWPCDKALKNSSPNSALPPTYP SSHPNAAM LNLTNSFLQRRI PAVAPAKKEFGAR
Sbjct: 1   MSEWPCDKALKNSSPNSALPPTYPSSSHPNAAM-LNLTNSFLQRRIPPAVAPAKKEFGAR 60

Query: 61  SHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL 120
           SHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL
Sbjct: 61  SHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL 120

Query: 121 IDADQVEKFRKKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK 164
           IDADQVEKFRKKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK
Sbjct: 121 IDADQVEKFRKKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK 163

[Close]
BLAST of MS008861 vs. NCBI nr
Match: XP_023523361.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.7 bits (696), Expect = 2.0e-69
Identity = 135/154 (87.66%), Postives = 141/154 (91.56%), Query Frame = 0 

Query: 11  KNSSPNSALPPTYPSSHPNAAMALNLTNSFLQRRISPAVAPAK-KEFGARSHRPVVTCRK 70
           +NSSP S LPPTYP     AAMALNLTNSFLQR  SPA+AP K KE GAR +RPVVTCRK
Sbjct: 27  RNSSPPSVLPPTYPLFIATAAMALNLTNSFLQRPFSPAIAPPKNKELGARRYRPVVTCRK 86

Query: 71  KDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLIDADQVEKFR 130
           KD+HPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL+DADQVEKFR
Sbjct: 87  KDIHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFR 146

Query: 131 KKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK 164
           KKFGELSQLMEIPVLKGEI+LPTKRKSGGKGKKK
Sbjct: 147 KKFGELSQLMEIPVLKGEIVLPTKRKSGGKGKKK 180

[Close]
BLAST of MS008861 vs. NCBI nr
Match: XP_022981730.1 (50S ribosomal protein L31, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 265.4 bits (677), Expect = 3.3e-67
Identity = 131/148 (88.51%), Postives = 136/148 (91.89%), Query Frame = 0 

Query: 17  SALPPTYPSSHPNAAMALNLTNSFLQRRISPAVAPAK-KEFGARSHRPVVTCRKKDLHPQ 76
           S LPPTYP     AAMALNLTNSFLQR  SPA+AP K KE GAR +RPVVTCRKKD+HPQ
Sbjct: 27  SVLPPTYPLFIATAAMALNLTNSFLQRSFSPAIAPPKNKELGARRYRPVVTCRKKDVHPQ 86

Query: 77  FYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLIDADQVEKFRKKFGEL 136
           FYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL+DADQVEKFRKKFGEL
Sbjct: 87  FYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGEL 146

Query: 137 SQLMEIPVLKGEIILPTKRKSGGKGKKK 164
           SQLMEIPVLKGEI+LPTKRKSGGKGKKK
Sbjct: 147 SQLMEIPVLKGEIVLPTKRKSGGKGKKK 174

[Close]
BLAST of MS008861 vs. NCBI nr
Match: XP_008466538.1 (PREDICTED: 50S ribosomal protein L31, chloroplastic [Cucumis melo] >ADN34183.1 50S ribosomal protein l31 [Cucumis melo subsp. melo])

HSP 1 Score: 262.7 bits (670), Expect = 2.1e-66
Identity = 142/167 (85.03%), Postives = 146/167 (87.43%), Query Frame = 0 

Query: 1   MSEWPCDKALKNSSPNSALPPTYP-SSHPNAAMALNLTNSF--LQRRISPAVAPAK-KEF 60
           MS+W  DKALK SS      P+YP S   NAAMALNLTNSF  LQR ISPAVAP K KE 
Sbjct: 1   MSDWRRDKALKKSS-----SPSYPHSPQANAAMALNLTNSFLQLQRPISPAVAPPKHKES 60

Query: 61  GARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRS 120
           GARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRS
Sbjct: 61  GARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRS 120

Query: 121 ALLIDADQVEKFRKKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK 164
           ALL+DADQVEKFRKKFGELSQLMEIPVLKGEIILP+KRKS  KGKKK
Sbjct: 121 ALLVDADQVEKFRKKFGELSQLMEIPVLKGEIILPSKRKS-AKGKKK 161

[Close]
BLAST of MS008861 vs. NCBI nr
Match: XP_038896266.1 (50S ribosomal protein L31, chloroplastic [Benincasa hispida] >XP_038896267.1 50S ribosomal protein L31, chloroplastic [Benincasa hispida])

HSP 1 Score: 256.9 bits (655), Expect = 1.2e-64
Identity = 139/167 (83.23%), Postives = 145/167 (86.83%), Query Frame = 0 

Query: 1   MSEWPCDKALKNSSPNSALPPTYPSSH-PNAAMALNLTNSF--LQRRISPAVAPAK-KEF 60
           MS W  DKALKNSS      P+YP S   NAAMALNLTNSF  LQR  S AVAP K KE 
Sbjct: 1   MSGWTRDKALKNSS------PSYPHSPLANAAMALNLTNSFLQLQRPSSLAVAPPKNKES 60

Query: 61  GARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRS 120
           GAR+HRPVVTCRKKDLHPQFYED+KVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRS
Sbjct: 61  GARTHRPVVTCRKKDLHPQFYEDSKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRS 120

Query: 121 ALLIDADQVEKFRKKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK 164
           ALL+DADQVEKFRKKFGELSQLMEIPVLKGEI+LPTK+KS GKGKKK
Sbjct: 121 ALLVDADQVEKFRKKFGELSQLMEIPVLKGEIVLPTKKKS-GKGKKK 160

[Close]
BLAST of MS008861 vs. ExPASy Swiss-Prot
Match: Q9FWS4 (50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.9e-46
Identity = 97/146 (66.44%), Postives = 113/146 (77.40%), Query Frame = 0 

Query: 32  MALNLTNSFLQRRISPAVAPAK------------KEFGARSHRPVV--TCRKKDLHPQFY 91
           MA++L NSFLQ  ISP V   +            K+   RS   VV  TCRKK+LHP+F+
Sbjct: 1   MAVSLPNSFLQ--ISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFH 60

Query: 92  EDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLIDADQVEKFRKKFGELSQ 151
           EDAKVYCNGELVMTTGGT+KEY VDVWSGNHPFYLG+RSAL++DADQVEKFRK+F  LS+
Sbjct: 61  EDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSE 120

Query: 152 LMEIPVLKGEIILPTKRKSGGKGKKK 164
           +MEIPVLKGEII+PTK+  G KGKKK
Sbjct: 121 IMEIPVLKGEIIMPTKKSKGPKGKKK 144

[Close]
BLAST of MS008861 vs. ExPASy Swiss-Prot
Match: P82249 (50S ribosomal protein L31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL31 PE=1 SV=2)

HSP 1 Score: 179.9 bits (455), Expect = 2.4e-44
Identity = 88/132 (66.67%), Postives = 106/132 (80.30%), Query Frame = 0 

Query: 32  MALNLTNSFLQRRISPAVAPAKKEFGARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMT 91
           M L L+N FL +  +        +  + + RP  +CRK D+HP+F EDAKVYCNGELVMT
Sbjct: 1   MVLTLSNQFLAKIPATPKTLTLPKTSSSTLRPQWSCRKSDIHPEFREDAKVYCNGELVMT 60

Query: 92  TGGTQKEYSVDVWSGNHPFYLGSRSALLIDADQVEKFRKKFGELSQLMEIPVLKGEIILP 151
           TGGTQK+Y+V+VWSGNHPFYLG+RSALL+DADQVEKFRKK+GEL+Q+MEIPVLKGEIILP
Sbjct: 61  TGGTQKDYTVEVWSGNHPFYLGNRSALLLDADQVEKFRKKYGELTQIMEIPVLKGEIILP 120

Query: 152 TKRKSGGKGKKK 164
            K+KS  K KKK
Sbjct: 121 PKKKS--KAKKK 130

[Close]
BLAST of MS008861 vs. ExPASy Swiss-Prot
Match: Q31L35 (50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpmE PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-17
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 69  KKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLIDAD-QVEK 128
           K D+HPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNHPFY G++   +ID + +VE+
Sbjct: 3   KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQK--IIDTEGRVER 62

Query: 129 FRKKFGEL 136
           F +K+G L
Sbjct: 63  FLRKYGML 68

[Close]
BLAST of MS008861 vs. ExPASy Swiss-Prot
Match: Q5N0T7 (50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpmE PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-17
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 69  KKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLIDAD-QVEK 128
           K D+HPQ+Y +AKVYCNGE VMT G TQ E  VDVWSGNHPFY G++   +ID + +VE+
Sbjct: 3   KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQK--IIDTEGRVER 62

Query: 129 FRKKFGEL 136
           F +K+G L
Sbjct: 63  FLRKYGML 68

[Close]
BLAST of MS008861 vs. ExPASy Swiss-Prot
Match: Q7V9Y9 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) OX=167539 GN=rpmE PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.5e-17
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 69  KKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLIDADQVEKF 128
           KKD+HP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNHPF+ G++  +L    +V++F
Sbjct: 3   KKDIHPNWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQK-ILDTEGRVDRF 62

Query: 129 RKKFG 134
            +K+G
Sbjct: 63  MRKYG 66

[Close]
BLAST of MS008861 vs. ExPASy TrEMBL
Match: A0A6J1C3Q3 (50S ribosomal protein L31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008063 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 8.3e-85
Identity = 161/164 (98.17%), Postives = 161/164 (98.17%), Query Frame = 0 

Query: 1   MSEWPCDKALKNSSPNSALPPTYP-SSHPNAAMALNLTNSFLQRRISPAVAPAKKEFGAR 60
           MSEWPCDKALKNSSPNSALPPTYP SSHPNAAM LNLTNSFLQRRI PAVAPAKKEFGAR
Sbjct: 1   MSEWPCDKALKNSSPNSALPPTYPSSSHPNAAM-LNLTNSFLQRRIPPAVAPAKKEFGAR 60

Query: 61  SHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL 120
           SHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL
Sbjct: 61  SHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL 120

Query: 121 IDADQVEKFRKKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK 164
           IDADQVEKFRKKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK
Sbjct: 121 IDADQVEKFRKKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK 163

[Close]
BLAST of MS008861 vs. ExPASy TrEMBL
Match: A0A6J1J0F9 (50S ribosomal protein L31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111480796 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.6e-67
Identity = 131/148 (88.51%), Postives = 136/148 (91.89%), Query Frame = 0 

Query: 17  SALPPTYPSSHPNAAMALNLTNSFLQRRISPAVAPAK-KEFGARSHRPVVTCRKKDLHPQ 76
           S LPPTYP     AAMALNLTNSFLQR  SPA+AP K KE GAR +RPVVTCRKKD+HPQ
Sbjct: 27  SVLPPTYPLFIATAAMALNLTNSFLQRSFSPAIAPPKNKELGARRYRPVVTCRKKDVHPQ 86

Query: 77  FYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLIDADQVEKFRKKFGEL 136
           FYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL+DADQVEKFRKKFGEL
Sbjct: 87  FYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDADQVEKFRKKFGEL 146

Query: 137 SQLMEIPVLKGEIILPTKRKSGGKGKKK 164
           SQLMEIPVLKGEI+LPTKRKSGGKGKKK
Sbjct: 147 SQLMEIPVLKGEIVLPTKRKSGGKGKKK 174

[Close]
BLAST of MS008861 vs. ExPASy TrEMBL
Match: E5GCI4 (50S ribosomal protein L31, chloroplastic OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.0e-66
Identity = 142/167 (85.03%), Postives = 146/167 (87.43%), Query Frame = 0 

Query: 1   MSEWPCDKALKNSSPNSALPPTYP-SSHPNAAMALNLTNSF--LQRRISPAVAPAK-KEF 60
           MS+W  DKALK SS      P+YP S   NAAMALNLTNSF  LQR ISPAVAP K KE 
Sbjct: 1   MSDWRRDKALKKSS-----SPSYPHSPQANAAMALNLTNSFLQLQRPISPAVAPPKHKES 60

Query: 61  GARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRS 120
           GARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRS
Sbjct: 61  GARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRS 120

Query: 121 ALLIDADQVEKFRKKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK 164
           ALL+DADQVEKFRKKFGELSQLMEIPVLKGEIILP+KRKS  KGKKK
Sbjct: 121 ALLVDADQVEKFRKKFGELSQLMEIPVLKGEIILPSKRKS-AKGKKK 161

[Close]
BLAST of MS008861 vs. ExPASy TrEMBL
Match: A0A1S3CRJ2 (50S ribosomal protein L31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503925 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.0e-66
Identity = 142/167 (85.03%), Postives = 146/167 (87.43%), Query Frame = 0 

Query: 1   MSEWPCDKALKNSSPNSALPPTYP-SSHPNAAMALNLTNSF--LQRRISPAVAPAK-KEF 60
           MS+W  DKALK SS      P+YP S   NAAMALNLTNSF  LQR ISPAVAP K KE 
Sbjct: 1   MSDWRRDKALKKSS-----SPSYPHSPQANAAMALNLTNSFLQLQRPISPAVAPPKHKES 60

Query: 61  GARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRS 120
           GARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRS
Sbjct: 61  GARSHRPVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRS 120

Query: 121 ALLIDADQVEKFRKKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK 164
           ALL+DADQVEKFRKKFGELSQLMEIPVLKGEIILP+KRKS  KGKKK
Sbjct: 121 ALLVDADQVEKFRKKFGELSQLMEIPVLKGEIILPSKRKS-AKGKKK 161

[Close]
BLAST of MS008861 vs. ExPASy TrEMBL
Match: A0A5A7TJN6 (50S ribosomal protein L31, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00310 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 9.6e-65
Identity = 139/161 (86.34%), Postives = 142/161 (88.20%), Query Frame = 0 

Query: 7   DKALKNSSPNSALPPTYP-SSHPNAAMALNLTNSF--LQRRISPAVAPAK-KEFGARSHR 66
           DKALK SS      P+YP S   NAAMALNLTNSF  LQR ISPAVAP K KE GARSHR
Sbjct: 32  DKALKKSS-----SPSYPHSPQANAAMALNLTNSFLQLQRPISPAVAPPKHKESGARSHR 91

Query: 67  PVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLIDA 126
           PVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALL+DA
Sbjct: 92  PVVTCRKKDLHPQFYEDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLVDA 151

Query: 127 DQVEKFRKKFGELSQLMEIPVLKGEIILPTKRKSGGKGKKK 164
           DQVEKFRKKFGELSQLMEIPVLKGEIILP+KRKS  KGKKK
Sbjct: 152 DQVEKFRKKFGELSQLMEIPVLKGEIILPSKRKS-AKGKKK 186

[Close]
BLAST of MS008861 vs. TAIR 10
Match: AT1G75350.1 (Ribosomal protein L31 )

HSP 1 Score: 186.8 bits (473), Expect = 1.4e-47
Identity = 97/146 (66.44%), Postives = 113/146 (77.40%), Query Frame = 0 

Query: 32  MALNLTNSFLQRRISPAVAPAK------------KEFGARSHRPVV--TCRKKDLHPQFY 91
           MA++L NSFLQ  ISP V   +            K+   RS   VV  TCRKK+LHP+F+
Sbjct: 1   MAVSLPNSFLQ--ISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFH 60

Query: 92  EDAKVYCNGELVMTTGGTQKEYSVDVWSGNHPFYLGSRSALLIDADQVEKFRKKFGELSQ 151
           EDAKVYCNGELVMTTGGT+KEY VDVWSGNHPFYLG+RSAL++DADQVEKFRK+F  LS+
Sbjct: 61  EDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSE 120

Query: 152 LMEIPVLKGEIILPTKRKSGGKGKKK 164
           +MEIPVLKGEII+PTK+  G KGKKK
Sbjct: 121 IMEIPVLKGEIIMPTKKSKGPKGKKK 144

The following BLAST results are available for this feature:
BLAST of MS008861 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136375.11.7e-8498.17LOW QUALITY PROTEIN: 50S ribosomal protein L31, chloroplastic [Momordica charant... [more]
XP_023523361.12.0e-6987.6650S ribosomal protein L31, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022981730.13.3e-6788.5150S ribosomal protein L31, chloroplastic-like [Cucurbita maxima][more]
XP_008466538.12.1e-6685.03PREDICTED: 50S ribosomal protein L31, chloroplastic [Cucumis melo] >ADN34183.1 5... [more]
XP_038896266.11.2e-6483.2350S ribosomal protein L31, chloroplastic [Benincasa hispida] >XP_038896267.1 50S... [more]
BLAST of MS008861 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FWS41.9e-4666.4450S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3... [more]
P822492.4e-4466.6750S ribosomal protein L31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL31 P... [more]
Q31L352.5e-1760.2950S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-80... [more]
Q5N0T72.5e-1760.2950S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / S... [more]
Q7V9Y95.5e-1758.4650S ribosomal protein L31 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / S... [more]
BLAST of MS008861 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C3Q38.3e-8598.1750S ribosomal protein L31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1J0F91.6e-6788.5150S ribosomal protein L31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
E5GCI41.0e-6685.0350S ribosomal protein L31, chloroplastic OS=Cucumis melo subsp. melo OX=412675 P... [more]
A0A1S3CRJ21.0e-6685.0350S ribosomal protein L31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503925... [more]
A0A5A7TJN69.6e-6586.3450S ribosomal protein L31, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of MS008861 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G75350.11.4e-4766.44Ribosomal protein L31 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002150Ribosomal protein L31PRINTSPR01249RIBOSOMALL31coord: 69..86
score: 33.33
coord: 98..113
score: 49.69
IPR002150Ribosomal protein L31PFAMPF01197Ribosomal_L31coord: 69..133
e-value: 2.1E-16
score: 59.9
IPR002150Ribosomal protein L31TIGRFAMTIGR00105TIGR00105coord: 69..134
e-value: 7.4E-15
score: 52.8
IPR002150Ribosomal protein L31PANTHERPTHR3328050S RIBOSOMAL PROTEIN L31, CHLOROPLASTICcoord: 54..163
IPR042105Ribosomal protein L31 superfamilyGENE3D4.10.830.30Ribosomal protein L31coord: 69..136
e-value: 7.0E-17
score: 63.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..24
NoneNo IPR availablePANTHERPTHR33280:SF550S RIBOSOMAL PROTEIN L31coord: 54..163
IPR034704L28p-likeSUPERFAMILY143800L28p-likecoord: 69..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS008861.1MS008861.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome