MS008856 (gene) Bitter gourd (TR) v1

Overview


Name	MS008856
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold4: 4298672 .. 4298764 (-)
RNA-Seq Expression	MS008856
Synteny	MS008856

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCTAGAACTTACGTTTTGATATTCTTCTTCTGGGCCATCCTCACGGTCATCACCCCCACTCTAATTTTCCTTTCAGAGAACTCAAGG

mRNA sequence

ATGACTGCTAGAACTTACGTTTTGATATTCTTCTTCTGGGCCATCCTCACGGTCATCACCCCCACTCTAATTTTCCTTTCAGAGAACTCAAGG

Coding sequence (CDS)

ATGACTGCTAGAACTTACGTTTTGATATTCTTCTTCTGGGCCATCCTCACGGTCATCACCCCCACTCTAATTTTCCTTTCAGAGAACTCAAGG

Protein sequence

MTARTYVLIFFFWAILTVITPTLIFLSENSR

Homology

[Close]

BLAST of MS008856 vs. NCBI nr
Match: XP_022135153.1 (uncharacterized protein LOC111004493 isoform X1 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  MTARTYVLIFFFWAILTVITPTLIFLSENSR 32
          MTARTYVLIFFFWAILTVITPTLIFLSENSR
Sbjct: 39 MTARTYVLIFFFWAILTVITPTLIFLSENSR 69

[Close]

BLAST of MS008856 vs. ExPASy TrEMBL
Match: A0A6J1C406 (uncharacterized protein LOC111004493 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004493 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  MTARTYVLIFFFWAILTVITPTLIFLSENSR 32
          MTARTYVLIFFFWAILTVITPTLIFLSENSR
Sbjct: 39 MTARTYVLIFFFWAILTVITPTLIFLSENSR 69

The following BLAST results are available for this feature:

BLAST of MS008856 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135153.1	2.3e-06	100.00	uncharacterized protein LOC111004493 isoform X1 [Momordica charantia]	[more]

BLAST of MS008856 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS008856 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C406	1.1e-06	100.00	uncharacterized protein LOC111004493 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of MS008856 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38396	TRANSMEMBRANE PROTEIN	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008856.1	MS008856.1	mRNA