MS008825 (gene) Bitter gourd (TR) v1

Overview


Name	MS008825
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	30S ribosomal protein S9
Location	scaffold4: 4054481 .. 4056258 (-)
RNA-Seq Expression	MS008825
Synteny	MS008825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCTATATCCTCTCTTGCATTTTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAATATCGCAGAAGCCAAACGGCCTGTCCTTTCCTCGCTCAAAATCTCTGGTAATTTCCCATCCCTGCAATTCCTCCCCACTTGTGGTATCTGCCTCCGCCGCTACCGGCGTGGAGACGGCGGAGCTTAGGAGCTTCGTGAAATCGAGGCTTCCTGGTGGCTTCGCTGCGCAAACGCTTATTGGCACGGGTCGCCGGAAATCTGCCATTGCTCGCGTTGTCATCCAAGAAGGCACTGGCAAAGTTATAATCAATTACCGTGACGCTAAGGTCCTCCATCTCTTCCCTCCTCCATGTACTTGCATTTATTCTAATTCGTTGAAGGTTCCTAATTTTGGTGCTGGATGTTCTTTGGACGATTTAGGGTTTTGATTCGTTTACTGGATGGTAATGCAGATGTTTTCTTAATTGAACCGAATATTGTCATTATGAGATCGTGATTACCATATTTAATATGCAAATGCTCGAACCATTTAGAGATGGAAGTGATTATTTAGTTTTTATTCTACTATCTTTGTTATCGATGTGCAACTATTATTATGTTAAATTGGATTGAACTAGAGCATAATATCCGCTCGATATCAGGTCTTCTTCTTCTATCTTCTATAGAGCATTTGAAGTTTTTACTTATAATTAAATTCTAGGCTTTTTGCCTCTTCATCTGACATAGTAAACTTAGATTAGATTAGATTCCGTTGCTTGGTTCCAAATGCGGAGGGATTAAGGAAGAAGAAGTGGTTTCATCCATCACAAGTAGGGATAAGGGACTGTTATGACTGCATCTATCTGCTGTGCTAATTTGTAGTCTGATTGTGCTTCTTTGAAGTTTGAGTTTGAGATTTTGGATCGCTGGTGAAATGGTTTTGGATGATGAAAGTCATGCCTATTAGGGGGATTGGGTACTTTCCTTGTTTTTTCTCAGTGGGTGTAGGAGTGAAAATGTACCTTTGTTCCACTTCCATTACATGTGGAAATTTTTACATCTGATGACATTGGATCACATTGCAAATCCTTCATTTGCATTCACCAACTCTCTTCATATCAATTGATGACACAGTGCTTCTGGAGGTGGCACCATAATCTCAAGTCTTATGCCTACGTCTGTTCTTTAATATGTTCAGATGTTAGTTTCTCTCTATATACAAGTGATTTTAGTGACCAAATGTGTTCTATTTCTAGTTTGGGTGCTGTTTTTCCTTAAATGTCTAGTATTGATGCTTGGATAACCTCATTTGTACTCGACATGACGACACAATATCTGGAATAAAGAGAAGATCCACCCCTTGTGAACTTGAGCTTCTAGATTCTATTTAATTTACATAAGCTTGTTATAACAAACAGTTCGTCCTATATTTGTTACAGAGGTTTTTAAGTTGTGACTGTGCATTCGGTAGAATTTTGCTCACCTATGGGTTGGGATACACAATGTGTTGCAGGAATACCTTCAAGGAAACCCATTGTGGCTTCAATATGTGAAAGTTCCGTTAGTAACATTGGGATATGAAAGTAGCTACGACGTATTCGTTAAAGCCGAAGGAGGGGGCCTCTCTGGCCAGGCTCAGGCAATTTCGCTCGGCATTGCTCGTGCGTTGCTAAAGGTGAGTGATGATCACAGGGCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCTAGAGTGGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGT

mRNA sequence

ATGGCTTCTTCTATATCCTCTCTTGCATTTTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAATATCGCAGAAGCCAAACGGCCTGTCCTTTCCTCGCTCAAAATCTCTGGTAATTTCCCATCCCTGCAATTCCTCCCCACTTGTGGTATCTGCCTCCGCCGCTACCGGCGTGGAGACGGCGGAGCTTAGGAGCTTCGTGAAATCGAGGCTTCCTGGTGGCTTCGCTGCGCAAACGCTTATTGGCACGGGTCGCCGGAAATCTGCCATTGCTCGCGTTGTCATCCAAGAAGGCACTGGCAAAGTTATAATCAATTACCGTGACGCTAAGGAATACCTTCAAGGAAACCCATTGTGGCTTCAATATGTGAAAGTTCCGTTAGTAACATTGGGATATGAAAGTAGCTACGACGTATTCGTTAAAGCCGAAGGAGGGGGCCTCTCTGGCCAGGCTCAGGCAATTTCGCTCGGCATTGCTCGTGCGTTGCTAAAGGTGAGTGATGATCACAGGGCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCTAGAGTGGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGT

Coding sequence (CDS)

ATGGCTTCTTCTATATCCTCTCTTGCATTTTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAATATCGCAGAAGCCAAACGGCCTGTCCTTTCCTCGCTCAAAATCTCTGGTAATTTCCCATCCCTGCAATTCCTCCCCACTTGTGGTATCTGCCTCCGCCGCTACCGGCGTGGAGACGGCGGAGCTTAGGAGCTTCGTGAAATCGAGGCTTCCTGGTGGCTTCGCTGCGCAAACGCTTATTGGCACGGGTCGCCGGAAATCTGCCATTGCTCGCGTTGTCATCCAAGAAGGCACTGGCAAAGTTATAATCAATTACCGTGACGCTAAGGAATACCTTCAAGGAAACCCATTGTGGCTTCAATATGTGAAAGTTCCGTTAGTAACATTGGGATATGAAAGTAGCTACGACGTATTCGTTAAAGCCGAAGGAGGGGGCCTCTCTGGCCAGGCTCAGGCAATTTCGCTCGGCATTGCTCGTGCGTTGCTAAAGGTGAGTGATGATCACAGGGCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCTAGAGTGGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGT

Protein sequence

MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETAELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR

Homology

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BLAST of MS008825 vs. NCBI nr
Match: XP_022143016.1 (30S ribosomal protein S9, chloroplastic [Momordica charantia])

HSP 1 Score: 376.3 bits (965), Expect = 1.6e-100
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60
           MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

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BLAST of MS008825 vs. NCBI nr
Match: XP_038903352.1 (30S ribosomal protein S9, chloroplastic [Benincasa hispida])

HSP 1 Score: 347.4 bits (890), Expect = 8.2e-92
Identity = 186/204 (91.18%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60
           MA+S+SSLAFSLSSLSFSSQ+S KPN LSFPRSKSL ISH  +++PLVVSASAA GVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSHKPNALSFPRSKSLQISHASSTTPLVVSASAAAGVETA 60

Query: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LRSFVKS LPGGFAAQTLIGTGRRKSA+ARVV++EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLRSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

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BLAST of MS008825 vs. NCBI nr
Match: XP_022940950.1 (30S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S ribosomal protein S9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037838.1 30S ribosomal protein S9, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 346.7 bits (888), Expect = 1.4e-91
Identity = 185/204 (90.69%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60
           MA+S+SSLAFSLSSLSFSSQ+SQ PN LSFPRSKSLVISHP ++SPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+++VKSRLPGGFAAQTLIGTGRRKSA+ARVV+QEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR+PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

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BLAST of MS008825 vs. NCBI nr
Match: XP_023523256.1 (30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.1 bits (884), Expect = 4.1e-91
Identity = 184/204 (90.20%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60
           MA+S+SSLAFSLSSLSFSSQ+SQ PN LSFPRSKSLVISHP ++SPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQLSQMPNALSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+++VKSRLPGGFAAQTLIGTGRRKSA+ARVV+QEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180
           YVKVPL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR+PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of MS008825 vs. NCBI nr
Match: XP_022982074.1 (30S ribosomal protein S9, chloroplastic [Cucurbita maxima])

HSP 1 Score: 342.0 bits (876), Expect = 3.4e-90
Identity = 184/204 (90.20%), Postives = 196/204 (96.08%), Query Frame = 0


Query: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60
           MA+S+SSLAFSLSSLSFSSQ+SQ PN LSFPRSKSLVISH  ++SPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+++VKSRLPGGFAAQTLIGTGRRKSA+ARVV+QEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

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BLAST of MS008825 vs. ExPASy Swiss-Prot
Match: Q9XJ27 (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 5.0e-76
Identity = 158/208 (75.96%), Postives = 181/208 (87.02%), Query Frame = 0


Query: 3   SSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNS---SPLVVSASAAT---G 62
           +SI++LA SLSSLSFSSQ+SQ+PN +SFPR+ S V + P  S   + L ++A+ +     
Sbjct: 2   ASITNLASSLSSLSFSSQVSQRPNTISFPRANS-VFALPAKSARRASLSITATVSAPPEE 61

Query: 63  VETAELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNP 122
            E  EL+ +VKSRLPGGFAAQ +IGTGRRK AIARVV+QEGTGKVIINYRDAKEYLQGNP
Sbjct: 62  EEIVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNP 121

Query: 123 LWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEG 182
           LWLQYVKVPLVTLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHR+PLKKEG
Sbjct: 122 LWLQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEG 181

Query: 183 LLTRDSRVVERKKAGLKKARKAPQFSKR 205
           LLTRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 182 LLTRDARVVERKKAGLKKARKAPQFSKR 208

[Close]

BLAST of MS008825 vs. ExPASy Swiss-Prot
Match: P82278 (30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE=1 SV=2)

HSP 1 Score: 284.6 bits (727), Expect = 8.5e-76
Identity = 155/208 (74.52%), Postives = 174/208 (83.65%), Query Frame = 0


Query: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATG---- 60
           MA SISSL  S +SLSF+S ++ KP  L   R+K   +S+P    PLV++A++AT     
Sbjct: 1   MAVSISSLTSSFASLSFTSNLTPKPQTLPMARTKPFSLSNPAVVKPLVITATSATAPVEV 60

Query: 61  VETAELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNP 120
            ETA+L  FVKSRLPGGFAAQT+IGTGRRK AIARVV+QEGTGK IINYRDAKEYLQGNP
Sbjct: 61  AETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNP 120

Query: 121 LWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEG 180
           LWLQYVK PL TLGYE++YDVFVKA GGGLSGQAQAISLG+ARALLKVS  HRAPLK+EG
Sbjct: 121 LWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEG 180

Query: 181 LLTRDSRVVERKKAGLKKARKAPQFSKR 205
           LLTRDSR+VERKK GLKKARKAPQFSKR
Sbjct: 181 LLTRDSRIVERKKPGLKKARKAPQFSKR 208

[Close]

BLAST of MS008825 vs. ExPASy Swiss-Prot
Match: Q8DMK7 (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpsI PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-35
Identity = 77/125 (61.60%), Postives = 98/125 (78.40%), Query Frame = 0


Query: 80  IGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFV 139
           +GTGRRKSA+ARV +  G+G++ IN R+  +YLQ NP++L  VK PL TLG E+SYD++V
Sbjct: 13  LGTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYV 72

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTRDSRVVERKKAGLKKARKAP 199
            A GGGL+GQA AI LGIARAL ++  ++R PLK EG LTRD R  ER+K GL+KARKAP
Sbjct: 73  NATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAP 132

Query: 200 QFSKR 205
           Q+SKR
Sbjct: 133 QYSKR 137

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BLAST of MS008825 vs. ExPASy Swiss-Prot
Match: Q9MUV1 (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.3e-35
Identity = 81/125 (64.80%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 80  IGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFV 139
           +GTGRRKSA+ARV +  G G+VIIN      YLQ N  +L  V+ PL TLG E +YD+ V
Sbjct: 13  LGTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIV 72

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTRDSRVVERKKAGLKKARKAP 199
           KA GGGL+GQA+AI LG+ARAL  +   +R PLKKEG LTRDSRV ERKK GLKKARKAP
Sbjct: 73  KAVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAP 132

Query: 200 QFSKR 205
           QFSKR
Sbjct: 133 QFSKR 137

[Close]

BLAST of MS008825 vs. ExPASy Swiss-Prot
Match: B2ITM7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpsI PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.7e-34
Identity = 74/124 (59.68%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 81  GTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFVK 140
           GTGRRK+A+ARV +  GTG++ +N +D   Y Q NP +L  +K PL TLG E+ YD+ VK
Sbjct: 15  GTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILVK 74

Query: 141 AEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTRDSRVVERKKAGLKKARKAPQ 200
           AEGGGL+GQA ++ LG+ARAL ++  D+R PLK EG LTRD R  ERKK GL KARKAPQ
Sbjct: 75  AEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQ 134

Query: 201 FSKR 205
           +SKR
Sbjct: 135 YSKR 138

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BLAST of MS008825 vs. ExPASy TrEMBL
Match: A0A6J1CNY0 (30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013001 PE=3 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 8.0e-101
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60
           MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of MS008825 vs. ExPASy TrEMBL
Match: A0A6J1FS60 (30S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446382 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.8e-92
Identity = 185/204 (90.69%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60
           MA+S+SSLAFSLSSLSFSSQ+SQ PN LSFPRSKSLVISHP ++SPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+++VKSRLPGGFAAQTLIGTGRRKSA+ARVV+QEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR+PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of MS008825 vs. ExPASy TrEMBL
Match: A0A6J1J3K2 (30S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481030 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.7e-90
Identity = 184/204 (90.20%), Postives = 196/204 (96.08%), Query Frame = 0


Query: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60
           MA+S+SSLAFSLSSLSFSSQ+SQ PN LSFPRSKSLVISH  ++SPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+++VKSRLPGGFAAQTLIGTGRRKSA+ARVV+QEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of MS008825 vs. ExPASy TrEMBL
Match: A0A5A7UBW5 (30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00010 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 183/204 (89.71%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60
           MA+SISSLAFSLSSLSFSSQ+S KP  LSFPRSKSL+IS   ++SPL+VSASAA  VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +L+SFVKS LPGGFAAQTLIGTGRRKSA+ARVV++EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of MS008825 vs. ExPASy TrEMBL
Match: A0A1S3CRR0 (30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 183/204 (89.71%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60
           MA+SISSLAFSLSSLSFSSQ+S KP  LSFPRSKSL+IS   ++SPL+VSASAA  VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +L+SFVKS LPGGFAAQTLIGTGRRKSA+ARVV++EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of MS008825 vs. TAIR 10
Match: AT1G74970.1 (ribosomal protein S9 )

HSP 1 Score: 285.4 bits (729), Expect = 3.6e-77
Identity = 158/208 (75.96%), Postives = 181/208 (87.02%), Query Frame = 0


Query: 3   SSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNS---SPLVVSASAAT---G 62
           +SI++LA SLSSLSFSSQ+SQ+PN +SFPR+ S V + P  S   + L ++A+ +     
Sbjct: 2   ASITNLASSLSSLSFSSQVSQRPNTISFPRANS-VFALPAKSARRASLSITATVSAPPEE 61

Query: 63  VETAELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNP 122
            E  EL+ +VKSRLPGGFAAQ +IGTGRRK AIARVV+QEGTGKVIINYRDAKEYLQGNP
Sbjct: 62  EEIVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNP 121

Query: 123 LWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEG 182
           LWLQYVKVPLVTLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHR+PLKKEG
Sbjct: 122 LWLQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEG 181

Query: 183 LLTRDSRVVERKKAGLKKARKAPQFSKR 205
           LLTRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 182 LLTRDARVVERKKAGLKKARKAPQFSKR 208

[Close]

BLAST of MS008825 vs. TAIR 10
Match: AT3G49080.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-17
Identity = 57/124 (45.97%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 81  GTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFVK 140
           GTGRRK +IARV IQ G GK  +N ++   Y          ++ PL        +D+   
Sbjct: 308 GTGRRKCSIARVWIQPGEGKFQVNEKEFDVYFPMLDHRAALLR-PLAETKTLGRWDIKCT 367

Query: 141 AEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTRDSRVVERKKAGLKKARKAPQ 200
            +GGG +GQ  AI LGI+RAL     D R  L+  G LTRDSRVVERKK G  KARK+ Q
Sbjct: 368 VKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTRDSRVVERKKPGKAKARKSFQ 427

Query: 201 FSKR 205
           + KR
Sbjct: 428 WVKR 430

The following BLAST results are available for this feature:

BLAST of MS008825 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143016.1	1.6e-100	100.00	30S ribosomal protein S9, chloroplastic [Momordica charantia]	[more]
XP_038903352.1	8.2e-92	91.18	30S ribosomal protein S9, chloroplastic [Benincasa hispida]	[more]
XP_022940950.1	1.4e-91	90.69	30S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S r...	[more]
XP_023523256.1	4.1e-91	90.20	30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022982074.1	3.4e-90	90.20	30S ribosomal protein S9, chloroplastic [Cucurbita maxima]	[more]

BLAST of MS008825 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XJ27	5.0e-76	75.96	30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 ...	[more]
P82278	8.5e-76	74.52	30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE...	[more]
Q8DMK7	2.5e-35	61.60	30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722...	[more]
Q9MUV1	3.3e-35	64.80	30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE...	[more]
B2ITM7	4.7e-34	59.68	30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) O...	[more]

BLAST of MS008825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNY0	8.0e-101	100.00	30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1FS60	6.8e-92	90.69	30S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J3K2	1.7e-90	90.20	30S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481...	[more]
A0A5A7UBW5	1.1e-89	89.71	30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CRR0	1.1e-89	89.71	30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 ...	[more]

BLAST of MS008825 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74970.1	3.6e-77	75.96	ribosomal protein S9	[more]
AT3G49080.1	2.4e-17	45.97	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 83..204 e-value: 6.9E-42 score: 142.8
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 59..204
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 70..204 e-value: 1.3E-49 score: 169.8
None	No IPR available	PANTHER	PTHR21569:SF1	28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL	coord: 59..204
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 143..161
IPR023035	Ribosomal protein S9, bacterial/plastid	HAMAP	MF_00532_B	Ribosomal_S9_B	coord: 74..204 score: 32.370373
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 78..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008825.1	MS008825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome