MS008714 (gene) Bitter gourd (TR) v1

Overview
NameMS008714
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X2
Locationscaffold4: 3266321 .. 3266494 (-)
RNA-Seq ExpressionMS008714
SyntenyMS008714
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGGAGGCTGCGGTGTTGGATTGGGACTTGGATGGGGCTTTGGTACAGCTTTCGGGAGCAAGTATCGGTCCTCGAGAATGATATTTCAGGGAATAGAATTTGACAAGAAGGATCAAAATCAAAGTTATGATAACAAGGACTCTAATGATTTATCCAGAAGTTCCAAAGAAGTT

mRNA sequence

GGTGGAGGCTGCGGTGTTGGATTGGGACTTGGATGGGGCTTTGGTACAGCTTTCGGGAGCAAGTATCGGTCCTCGAGAATGATATTTCAGGGAATAGAATTTGACAAGAAGGATCAAAATCAAAGTTATGATAACAAGGACTCTAATGATTTATCCAGAAGTTCCAAAGAAGTT

Coding sequence (CDS)

GGTGGAGGCTGCGGTGTTGGATTGGGACTTGGATGGGGCTTTGGTACAGCTTTCGGGAGCAAGTATCGGTCCTCGAGAATGATATTTCAGGGAATAGAATTTGACAAGAAGGATCAAAATCAAAGTTATGATAACAAGGACTCTAATGATTTATCCAGAAGTTCCAAAGAAGTT

Protein sequence

GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV
Homology
BLAST of MS008714 vs. NCBI nr
Match: XP_022159852.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X4 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 7.4e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 59
          GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV
Sbjct: 29 GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 86

BLAST of MS008714 vs. NCBI nr
Match: XP_022159834.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X2 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 7.4e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 59
          GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV
Sbjct: 38 GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 95

BLAST of MS008714 vs. NCBI nr
Match: XP_022159826.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 7.4e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 59
          GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV
Sbjct: 40 GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 97

BLAST of MS008714 vs. NCBI nr
Match: XP_022159843.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X3 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 7.4e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 59
          GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV
Sbjct: 31 GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 88

BLAST of MS008714 vs. NCBI nr
Match: XP_004141282.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 3.8e-18
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 59
          GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQG+EFD KDQNQSYD KDS DLSR+S++V
Sbjct: 40 GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDNKDQNQSYDMKDSKDLSRNSRKV 97

BLAST of MS008714 vs. ExPASy Swiss-Prot
Match: Q8VY77 (Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TGD5 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.9e-10
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQ 42
          GGGCGVGLGLGWGFGTAFGS YRSSR+ FQGIE +  D+ +
Sbjct: 40 GGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADKRE 80

BLAST of MS008714 vs. ExPASy TrEMBL
Match: A0A6J1E543 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111026129 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 59
          GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV
Sbjct: 40 GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 97

BLAST of MS008714 vs. ExPASy TrEMBL
Match: A0A6J1E0Y8 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X4 OS=Momordica charantia OX=3673 GN=LOC111026129 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 59
          GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV
Sbjct: 29 GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 86

BLAST of MS008714 vs. ExPASy TrEMBL
Match: A0A6J1E001 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111026129 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 59
          GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV
Sbjct: 31 GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 88

BLAST of MS008714 vs. ExPASy TrEMBL
Match: A0A6J1E3G5 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026129 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 59
          GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV
Sbjct: 38 GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 95

BLAST of MS008714 vs. ExPASy TrEMBL
Match: A0A0A0L0F8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-18
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQSYDNKDSNDLSRSSKEV 59
          GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQG+EFD KDQNQSYD KDS DLSR+S++V
Sbjct: 40 GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGMEFDNKDQNQSYDMKDSKDLSRNSRKV 97

BLAST of MS008714 vs. TAIR 10
Match: AT1G27695.1 (glycine-rich protein )

HSP 1 Score: 64.7 bits (156), Expect = 2.8e-11
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQ 42
          GGGCGVGLGLGWGFGTAFGS YRSSR+ FQGIE +  D+ +
Sbjct: 40 GGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADKRE 80

BLAST of MS008714 vs. TAIR 10
Match: AT1G27695.2 (glycine-rich protein )

HSP 1 Score: 64.7 bits (156), Expect = 2.8e-11
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 1  GGGCGVGLGLGWGFGTAFGSKYRSSRMIFQGIEFDKKDQNQ 42
          GGGCGVGLGLGWGFGTAFGS YRSSR+ FQGIE +  D+ +
Sbjct: 40 GGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADKRE 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159852.17.4e-22100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X4 [Momordica ... [more]
XP_022159834.17.4e-22100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X2 [Momordica ... [more]
XP_022159826.17.4e-22100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 [Momordica ... [more]
XP_022159843.17.4e-22100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X3 [Momordica ... [more]
XP_004141282.13.8e-1887.93protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis sativus... [more]
Match NameE-valueIdentityDescription
Q8VY773.9e-1075.61Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic OS=Arabidopsis thaliana OX=... [more]
Match NameE-valueIdentityDescription
A0A6J1E5433.6e-22100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X1 OS=Momordic... [more]
A0A6J1E0Y83.6e-22100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X4 OS=Momordic... [more]
A0A6J1E0013.6e-22100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X3 OS=Momordic... [more]
A0A6J1E3G53.6e-22100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic-like isoform X2 OS=Momordic... [more]
A0A0A0L0F81.8e-1887.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G27695.12.8e-1175.61glycine-rich protein [more]
AT1G27695.22.8e-1175.61glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..58
NoneNo IPR availablePANTHERPTHR19359:SF115PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 5, CHLOROPLASTICcoord: 2..50
NoneNo IPR availablePANTHERPTHR19359CYTOCHROME B5coord: 2..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS008714.1MS008714.1mRNA