MS008683 (gene) Bitter gourd (TR) v1

Overview
NameMS008683
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMixed-linked glucan synthase
Locationscaffold4: 3060596 .. 3060907 (-)
RNA-Seq ExpressionMS008683
SyntenyMS008683
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCGACTACTTCCAGTTGCAGTGGCTTCTTCTCCATCAGATCGAATTCTATGGAGCCAAGAGTGAGAACTTCTTCACCTAGCCATGGCTCTCCAGCATGTGGGAAGCTTGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTTACTGCTTTCTTTGGATCTCTGGATCGTTGCTCGTGTATCCGTATCGCCACAGCAGAGGACGATGGCGATGAGGCGAACGATGTCCCCTTGATCCCGAACGACGGGAACCTACGACAGGATGGTGCTGCCGCCGGCCGGAGGAGGGCCGGGAAAGGCAAGAAG

mRNA sequence

ATGGCCGCGACTACTTCCAGTTGCAGTGGCTTCTTCTCCATCAGATCGAATTCTATGGAGCCAAGAGTGAGAACTTCTTCACCTAGCCATGGCTCTCCAGCATGTGGGAAGCTTGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTTACTGCTTTCTTTGGATCTCTGGATCGTTGCTCGTGTATCCGTATCGCCACAGCAGAGGACGATGGCGATGAGGCGAACGATGTCCCCTTGATCCCGAACGACGGGAACCTACGACAGGATGGTGCTGCCGCCGGCCGGAGGAGGGCCGGGAAAGGCAAGAAG

Coding sequence (CDS)

ATGGCCGCGACTACTTCCAGTTGCAGTGGCTTCTTCTCCATCAGATCGAATTCTATGGAGCCAAGAGTGAGAACTTCTTCACCTAGCCATGGCTCTCCAGCATGTGGGAAGCTTGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTTACTGCTTTCTTTGGATCTCTGGATCGTTGCTCGTGTATCCGTATCGCCACAGCAGAGGACGATGGCGATGAGGCGAACGATGTCCCCTTGATCCCGAACGACGGGAACCTACGACAGGATGGTGCTGCCGCCGGCCGGAGGAGGGCCGGGAAAGGCAAGAAG

Protein sequence

MAATTSSCSGFFSIRSNSMEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDRCSCIRIATAEDDGDEANDVPLIPNDGNLRQDGAAAGRRRAGKGKK
Homology
BLAST of MS008683 vs. NCBI nr
Match: KAA0064464.1 (hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK20124.1 hypothetical protein E5676_scaffold134G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 7.0e-47
Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 1   MAATTSSCSGFFSIRSNSMEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDRC 60
           MAA TS+CS FFSIRSNSMEPRVRTSSPSHGSP+CGKLDGVATWLINGFVTAFFGSL+RC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGAAAGRRRAGKGKK 105
           SCIRIATAEDDGDE ND+PLIPNDGNLRQDG AAGRRRAGKGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQDGTAAGRRRAGKGKK 104

BLAST of MS008683 vs. NCBI nr
Match: XP_038897734.1 (uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida])

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 1   MAATTSSCSGFFSIRSNSMEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDRC 60
           MAA TS+CS FFSIRSNSMEPR+RTSS SHGSPACGKLDGVATWLINGFVTAFFGSL+RC
Sbjct: 27  MAAITSTCSSFFSIRSNSMEPRLRTSSSSHGSPACGKLDGVATWLINGFVTAFFGSLERC 86

Query: 61  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGAAAGRRRAGKGKK 105
           SCIRIATAEDDGDEANDVPLIPNDGNLRQDG AAGRRRAGKGKK
Sbjct: 87  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGTAAGRRRAGKGKK 130

BLAST of MS008683 vs. NCBI nr
Match: XP_038897735.1 (uncharacterized protein LOC120085674 isoform X2 [Benincasa hispida])

HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 1   MAATTSSCSGFFSIRSNSMEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDRC 60
           MAA TS+CS FFSIRSNSMEPR+RTSS SHGSPACGKLDGVATWLINGFVTAFFGSL+RC
Sbjct: 16  MAAITSTCSSFFSIRSNSMEPRLRTSSSSHGSPACGKLDGVATWLINGFVTAFFGSLERC 75

Query: 61  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGAAAGRRRAGKGKK 105
           SCIRIATAEDDGDEANDVPLIPNDGNLRQDG AAGRRRAGKGKK
Sbjct: 76  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGTAAGRRRAGKGKK 119

BLAST of MS008683 vs. NCBI nr
Match: XP_022977101.1 (uncharacterized protein LOC111477268 [Cucurbita maxima])

HSP 1 Score: 189.5 bits (480), Expect = 1.5e-44
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 0

Query: 1   MAATTSSCSGFFSIRSNSMEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDRC 60
           MAA TS+CS FFSIRS+SMEPRVRTSSPSH SPACGKLDGVATWLINGFVTAFFGSL+RC
Sbjct: 91  MAAITSTCSSFFSIRSSSMEPRVRTSSPSHASPACGKLDGVATWLINGFVTAFFGSLERC 150

Query: 61  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGAAAGRRRAGKGKK 105
           SCIRIATAEDDGDEAND PLIPNDGNL+QDGAAAGRRR  KGKK
Sbjct: 151 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKK 194

BLAST of MS008683 vs. NCBI nr
Match: KAG7024315.1 (hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.2 bits (474), Expect = 7.2e-44
Identity = 92/104 (88.46%), Postives = 98/104 (94.23%), Query Frame = 0

Query: 1   MAATTSSCSGFFSIRSNSMEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDRC 60
           MA+ TS+CS FFSIRS+SMEPRVRTSSP+H SPACGKLDGVATWLINGFVTAFFGSL+RC
Sbjct: 1   MASITSTCSSFFSIRSSSMEPRVRTSSPTHASPACGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGAAAGRRRAGKGKK 105
           SCIRIATAEDDGDEAND PLIPNDGNL+QDGAAAGRRR  KGKK
Sbjct: 61  SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKK 104

BLAST of MS008683 vs. ExPASy TrEMBL
Match: A0A5D3D9D4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002500 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.4e-47
Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 1   MAATTSSCSGFFSIRSNSMEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDRC 60
           MAA TS+CS FFSIRSNSMEPRVRTSSPSHGSP+CGKLDGVATWLINGFVTAFFGSL+RC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGAAAGRRRAGKGKK 105
           SCIRIATAEDDGDE ND+PLIPNDGNLRQDG AAGRRRAGKGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQDGTAAGRRRAGKGKK 104

BLAST of MS008683 vs. ExPASy TrEMBL
Match: A0A0A0L2M3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644660 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0

Query: 1   MAATTSSCSGFFSIRSNSMEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDRC 60
           MAA TS+CS FFSIRSNSMEPRVRTSSPSHGSP+CGKLDGVATWLINGFVTAFFGSL+RC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGAAAGRRRAGKGKK 105
           SCIRIATAEDDGDE ND+PLIPNDGNLRQ+G A GRRRAGKGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQEGTAGGRRRAGKGKK 104

BLAST of MS008683 vs. ExPASy TrEMBL
Match: A0A6J1IIU9 (uncharacterized protein LOC111477268 OS=Cucurbita maxima OX=3661 GN=LOC111477268 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.0e-45
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 0

Query: 1   MAATTSSCSGFFSIRSNSMEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDRC 60
           MAA TS+CS FFSIRS+SMEPRVRTSSPSH SPACGKLDGVATWLINGFVTAFFGSL+RC
Sbjct: 91  MAAITSTCSSFFSIRSSSMEPRVRTSSPSHASPACGKLDGVATWLINGFVTAFFGSLERC 150

Query: 61  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGAAAGRRRAGKGKK 105
           SCIRIATAEDDGDEAND PLIPNDGNL+QDGAAAGRRR  KGKK
Sbjct: 151 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKK 194

BLAST of MS008683 vs. ExPASy TrEMBL
Match: A0A061FG81 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034666 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 79/107 (73.83%), Postives = 88/107 (82.24%), Query Frame = 0

Query: 1   MAATTS--SCSGFFSIRSNSMEPRVRTSSPSHGSPA-CGKLDGVATWLINGFVTAFFGSL 60
           MAATTS  SCS FF++RSN++EPRVR SS +HGSPA CGKLDGVA W ING  TAFF SL
Sbjct: 1   MAATTSSTSCSSFFNLRSNNVEPRVRPSSSTHGSPAGCGKLDGVAMWFINGVATAFFASL 60

Query: 61  DRCSCIRIATAEDDGDEANDVPLIPNDGNLRQDGAAAGRRRAGKGKK 105
           +RCSCIRIAT EDDG+EANDVPLI +DGN+R D   A RRR GKGKK
Sbjct: 61  ERCSCIRIAT-EDDGEEANDVPLIHSDGNMRHDAGTASRRRTGKGKK 106

BLAST of MS008683 vs. ExPASy TrEMBL
Match: A0A2R6R383 (Protease OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11731 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.3e-32
Identity = 76/105 (72.38%), Postives = 86/105 (81.90%), Query Frame = 0

Query: 1   MAATT-SSCSGFFSIRSNSMEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDR 60
           MAATT SSCS FF++R+N +EPRVR SSPSHGSP CGK DGV  WLING  +AFF SLDR
Sbjct: 1   MAATTSSSCSSFFNLRANPVEPRVR-SSPSHGSPGCGKQDGVTMWLINGVASAFFASLDR 60

Query: 61  CSCIRIATAEDDGDEANDVPLIPNDGNLRQDGAAAGRRRAGKGKK 105
           CSCIRI+T EDDGD+AN++PLI NDGN R D  + GRRR GKGKK
Sbjct: 61  CSCIRISTHEDDGDDANNLPLIFNDGNYRLDDRSGGRRRTGKGKK 104

BLAST of MS008683 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 9.8e-07
Identity = 25/67 (37.31%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 16 SNSMEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDRCSCIRIATAEDD--GD 75
          S+S+     T+S +  + +  KLD  A+W+    ++AFF SL+RCSC+ ++T++DD  G+
Sbjct: 4  SSSINSTASTAS-NLSTASLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGE 63

Query: 76 EANDVPL 81
          E+++ PL
Sbjct: 64 ESHNRPL 69

BLAST of MS008683 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 8.3e-06
Identity = 19/59 (32.20%), Postives = 37/59 (62.71%), Query Frame = 0

Query: 19 MEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDRCSCIRIATAEDDGDEAND 78
          M+  +  +S    + +  K+D  A+W+    ++AFF SL+RC+C+ ++T+ DD D+ +D
Sbjct: 1  MDKSISITSNVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDD 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0064464.17.0e-4792.31hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK201... [more]
XP_038897734.11.6e-4693.27uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida][more]
XP_038897735.11.6e-4693.27uncharacterized protein LOC120085674 isoform X2 [Benincasa hispida][more]
XP_022977101.11.5e-4490.38uncharacterized protein LOC111477268 [Cucurbita maxima][more]
KAG7024315.17.2e-4488.46hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D9D43.4e-4792.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L2M32.9e-4690.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644660 PE=4 SV=1[more]
A0A6J1IIU97.0e-4590.38uncharacterized protein LOC111477268 OS=Cucurbita maxima OX=3661 GN=LOC111477268... [more]
A0A061FG811.1e-3273.83Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034666 PE=4 SV=1[more]
A0A2R6R3832.3e-3272.38Protease OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11731 PE=4... [more]
Match NameE-valueIdentityDescription
AT4G10810.19.8e-0737.31unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G24026.18.3e-0632.20unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..104
NoneNo IPR availablePANTHERPTHR34061:SF2PROTEIN, PUTATIVE-RELATEDcoord: 2..104
NoneNo IPR availablePANTHERPTHR34061PROTEIN, PUTATIVE-RELATEDcoord: 2..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS008683.1MS008683.1mRNA