MS008683 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGCGACTACTTCCAGTTGCAGTGGCTTCTTCTCCATCAGATCGAATTCTATGGAGCCAAGAGTGAGAACTTCTTCACCTAGCCATGGCTCTCCAGCATGTGGGAAGCTTGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTTACTGCTTTCTTTGGATCTCTGGATCGTTGCTCGTGTATCCGTATCGCCACAGCAGAGGACGATGGCGATGAGGCGAACGATGTCCCCTTGATCCCGAACGACGGGAACCTACGACAGGATGGTGCTGCCGCCGGCCGGAGGAGGGCCGGGAAAGGCAAGAAG ATGGCCGCGACTACTTCCAGTTGCAGTGGCTTCTTCTCCATCAGATCGAATTCTATGGAGCCAAGAGTGAGAACTTCTTCACCTAGCCATGGCTCTCCAGCATGTGGGAAGCTTGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTTACTGCTTTCTTTGGATCTCTGGATCGTTGCTCGTGTATCCGTATCGCCACAGCAGAGGACGATGGCGATGAGGCGAACGATGTCCCCTTGATCCCGAACGACGGGAACCTACGACAGGATGGTGCTGCCGCCGGCCGGAGGAGGGCCGGGAAAGGCAAGAAG ATGGCCGCGACTACTTCCAGTTGCAGTGGCTTCTTCTCCATCAGATCGAATTCTATGGAGCCAAGAGTGAGAACTTCTTCACCTAGCCATGGCTCTCCAGCATGTGGGAAGCTTGATGGGGTGGCAACTTGGCTCATCAATGGCTTTGTTACTGCTTTCTTTGGATCTCTGGATCGTTGCTCGTGTATCCGTATCGCCACAGCAGAGGACGATGGCGATGAGGCGAACGATGTCCCCTTGATCCCGAACGACGGGAACCTACGACAGGATGGTGCTGCCGCCGGCCGGAGGAGGGCCGGGAAAGGCAAGAAG MAATTSSCSGFFSIRSNSMEPRVRTSSPSHGSPACGKLDGVATWLINGFVTAFFGSLDRCSCIRIATAEDDGDEANDVPLIPNDGNLRQDGAAAGRRRAGKGKK Homology
BLAST of MS008683 vs. NCBI nr
Match: KAA0064464.1 (hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK20124.1 hypothetical protein E5676_scaffold134G002500 [Cucumis melo var. makuwa]) HSP 1 Score: 197.2 bits (500), Expect = 7.0e-47 Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 0
BLAST of MS008683 vs. NCBI nr
Match: XP_038897734.1 (uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida]) HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46 Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0
BLAST of MS008683 vs. NCBI nr
Match: XP_038897735.1 (uncharacterized protein LOC120085674 isoform X2 [Benincasa hispida]) HSP 1 Score: 196.1 bits (497), Expect = 1.6e-46 Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0
BLAST of MS008683 vs. NCBI nr
Match: XP_022977101.1 (uncharacterized protein LOC111477268 [Cucurbita maxima]) HSP 1 Score: 189.5 bits (480), Expect = 1.5e-44 Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 0
BLAST of MS008683 vs. NCBI nr
Match: KAG7024315.1 (hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 187.2 bits (474), Expect = 7.2e-44 Identity = 92/104 (88.46%), Postives = 98/104 (94.23%), Query Frame = 0
BLAST of MS008683 vs. ExPASy TrEMBL
Match: A0A5D3D9D4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002500 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 3.4e-47 Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 0
BLAST of MS008683 vs. ExPASy TrEMBL
Match: A0A0A0L2M3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644660 PE=4 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46 Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0
BLAST of MS008683 vs. ExPASy TrEMBL
Match: A0A6J1IIU9 (uncharacterized protein LOC111477268 OS=Cucurbita maxima OX=3661 GN=LOC111477268 PE=4 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 7.0e-45 Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 0
BLAST of MS008683 vs. ExPASy TrEMBL
Match: A0A061FG81 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_034666 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32 Identity = 79/107 (73.83%), Postives = 88/107 (82.24%), Query Frame = 0
BLAST of MS008683 vs. ExPASy TrEMBL
Match: A0A2R6R383 (Protease OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11731 PE=4 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 2.3e-32 Identity = 76/105 (72.38%), Postives = 86/105 (81.90%), Query Frame = 0
BLAST of MS008683 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 50.4 bits (119), Expect = 9.8e-07 Identity = 25/67 (37.31%), Postives = 45/67 (67.16%), Query Frame = 0
BLAST of MS008683 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 47.4 bits (111), Expect = 8.3e-06 Identity = 19/59 (32.20%), Postives = 37/59 (62.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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