MS008632 (gene) Bitter gourd (TR) v1

Overview
NameMS008632
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein of unknown function (DUF3511)
Locationscaffold4: 2761283 .. 2761618 (-)
RNA-Seq ExpressionMS008632
SyntenyMS008632
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATTACAGGTCATATGGAAATGGGTTCAGTGGAGACGCCAATACAGAGGGCAACTATGCCGCAAAGCCTCGGAACTCCTACGATTTGAGGTCGTATTCTGCTTCCTATGCACAAACCCAGATGGAAATCAAGGAATCGCAGTTCAAGAAAGCGAAAACCCCATCTGGGTCTGTCTCTAAATCATGGAGTTTCGCGGACCCTGAATTCCAGAGGAAGAAGAGGGTTGCTAACTATAAAATGTATTCTGTGGAAGGCAAGATGAAGGGTTCTTTCAGGAACAGTTTCAGATGGCTGAAGCGCAAATGCGAACAGGTCGTTTATGGCTGGTGG

mRNA sequence

ATGGAAGATTACAGGTCATATGGAAATGGGTTCAGTGGAGACGCCAATACAGAGGGCAACTATGCCGCAAAGCCTCGGAACTCCTACGATTTGAGGTCGTATTCTGCTTCCTATGCACAAACCCAGATGGAAATCAAGGAATCGCAGTTCAAGAAAGCGAAAACCCCATCTGGGTCTGTCTCTAAATCATGGAGTTTCGCGGACCCTGAATTCCAGAGGAAGAAGAGGGTTGCTAACTATAAAATGTATTCTGTGGAAGGCAAGATGAAGGGTTCTTTCAGGAACAGTTTCAGATGGCTGAAGCGCAAATGCGAACAGGTCGTTTATGGCTGGTGG

Coding sequence (CDS)

ATGGAAGATTACAGGTCATATGGAAATGGGTTCAGTGGAGACGCCAATACAGAGGGCAACTATGCCGCAAAGCCTCGGAACTCCTACGATTTGAGGTCGTATTCTGCTTCCTATGCACAAACCCAGATGGAAATCAAGGAATCGCAGTTCAAGAAAGCGAAAACCCCATCTGGGTCTGTCTCTAAATCATGGAGTTTCGCGGACCCTGAATTCCAGAGGAAGAAGAGGGTTGCTAACTATAAAATGTATTCTGTGGAAGGCAAGATGAAGGGTTCTTTCAGGAACAGTTTCAGATGGCTGAAGCGCAAATGCGAACAGGTCGTTTATGGCTGGTGG

Protein sequence

MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSVSKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW
Homology
BLAST of MS008632 vs. NCBI nr
Match: XP_022136638.1 (uncharacterized protein LOC111008293 [Momordica charantia] >XP_022158308.1 uncharacterized protein LOC111024820 [Momordica charantia])

HSP 1 Score: 230.3 bits (586), Expect = 8.0e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV 60
           MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV
Sbjct: 1   MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV 60

Query: 61  SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 113
           SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW
Sbjct: 61  SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 112

BLAST of MS008632 vs. NCBI nr
Match: XP_038896667.1 (uncharacterized protein LOC120084929 [Benincasa hispida])

HSP 1 Score: 203.8 bits (517), Expect = 8.0e-49
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 0

Query: 1   MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV 60
           MEDYRS GNGF+G+ NTE NYA  PRN+Y+LRSYSASYAQTQMEI++SQFKK KTPS SV
Sbjct: 1   MEDYRSNGNGFTGENNTEFNYAPNPRNAYELRSYSASYAQTQMEIRDSQFKKGKTPSESV 60

Query: 61  SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 113
           SKSWSF+DPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW
Sbjct: 61  SKSWSFSDPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 112

BLAST of MS008632 vs. NCBI nr
Match: KAA0064509.1 (uncharacterized protein E6C27_scaffold255G002260 [Cucumis melo var. makuwa] >TYK20081.1 uncharacterized protein E5676_scaffold134G002050 [Cucumis melo var. makuwa])

HSP 1 Score: 197.6 bits (501), Expect = 5.7e-47
Identity = 95/112 (84.82%), Postives = 103/112 (91.96%), Query Frame = 0

Query: 1   MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV 60
           MEDYR +GNGFSG+ NTE NYA   RNSY+LRSYSA+YAQTQMEI++SQFKK K+ SGSV
Sbjct: 1   MEDYRYHGNGFSGENNTEFNYATNSRNSYELRSYSATYAQTQMEIRDSQFKKGKSHSGSV 60

Query: 61  SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 113
           SKSWSF+DPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCE VVYGWW
Sbjct: 61  SKSWSFSDPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEHVVYGWW 112

BLAST of MS008632 vs. NCBI nr
Match: XP_011654415.1 (uncharacterized protein LOC101210762 [Cucumis sativus] >KGN55347.1 hypothetical protein Csa_012203 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 2.9e-46
Identity = 94/112 (83.93%), Postives = 102/112 (91.07%), Query Frame = 0

Query: 1   MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV 60
           MEDYR +GNGFSG  NTE NYA   RNSY+LR+YSA+YAQTQMEI++SQFKK K+ SGSV
Sbjct: 1   MEDYRYHGNGFSGGNNTEFNYATNSRNSYELRTYSATYAQTQMEIRDSQFKKGKSHSGSV 60

Query: 61  SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 113
           SKSWSF+DPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCE VVYGWW
Sbjct: 61  SKSWSFSDPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEHVVYGWW 112

BLAST of MS008632 vs. NCBI nr
Match: KAG7024353.1 (hypothetical protein SDJN02_13167, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.7 bits (426), Expect = 2.9e-38
Identity = 84/112 (75.00%), Postives = 91/112 (81.25%), Query Frame = 0

Query: 1   MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV 60
           MEDYRS+GNGF GD NTE   A  P +SY+LRSYSASYAQTQME      KK +   GS 
Sbjct: 1   MEDYRSHGNGFGGDINTESTSATNPGSSYELRSYSASYAQTQMET-----KKGEKGCGSF 60

Query: 61  SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 113
            KSWS +DPEFQRKKRVA+YKMYSVEGKMKGSFRNSFRWLKR+CEQVVYGWW
Sbjct: 61  PKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSFRNSFRWLKRRCEQVVYGWW 107

BLAST of MS008632 vs. ExPASy TrEMBL
Match: A0A6J1C841 (uncharacterized protein LOC111008293 OS=Momordica charantia OX=3673 GN=LOC111008293 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 3.9e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV 60
           MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV
Sbjct: 1   MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV 60

Query: 61  SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 113
           SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW
Sbjct: 61  SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 112

BLAST of MS008632 vs. ExPASy TrEMBL
Match: A0A5D3D951 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002050 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.8e-47
Identity = 95/112 (84.82%), Postives = 103/112 (91.96%), Query Frame = 0

Query: 1   MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV 60
           MEDYR +GNGFSG+ NTE NYA   RNSY+LRSYSA+YAQTQMEI++SQFKK K+ SGSV
Sbjct: 1   MEDYRYHGNGFSGENNTEFNYATNSRNSYELRSYSATYAQTQMEIRDSQFKKGKSHSGSV 60

Query: 61  SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 113
           SKSWSF+DPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCE VVYGWW
Sbjct: 61  SKSWSFSDPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEHVVYGWW 112

BLAST of MS008632 vs. ExPASy TrEMBL
Match: A0A0A0L414 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646210 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.4e-46
Identity = 94/112 (83.93%), Postives = 102/112 (91.07%), Query Frame = 0

Query: 1   MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV 60
           MEDYR +GNGFSG  NTE NYA   RNSY+LR+YSA+YAQTQMEI++SQFKK K+ SGSV
Sbjct: 1   MEDYRYHGNGFSGGNNTEFNYATNSRNSYELRTYSATYAQTQMEIRDSQFKKGKSHSGSV 60

Query: 61  SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 113
           SKSWSF+DPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCE VVYGWW
Sbjct: 61  SKSWSFSDPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEHVVYGWW 112

BLAST of MS008632 vs. ExPASy TrEMBL
Match: A0A6J1IF42 (uncharacterized protein LOC111476369 OS=Cucurbita maxima OX=3661 GN=LOC111476369 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.0e-38
Identity = 83/112 (74.11%), Postives = 90/112 (80.36%), Query Frame = 0

Query: 1   MEDYRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSV 60
           MEDYRS GNGF G  NTE NY   P +SY+LRSYSASYAQTQME+     KK +   GS 
Sbjct: 1   MEDYRSRGNGFGGHINTESNYVTNPGSSYELRSYSASYAQTQMEM-----KKGEKGCGSF 60

Query: 61  SKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 113
            KSWS +DPEFQRKKRVA+YKMYSVEGKMKGS RNSFRWLKR+CEQVVYGWW
Sbjct: 61  PKSWSLSDPEFQRKKRVASYKMYSVEGKMKGSIRNSFRWLKRRCEQVVYGWW 107

BLAST of MS008632 vs. ExPASy TrEMBL
Match: A0A5N6RKJ1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017975 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28
Identity = 73/116 (62.93%), Postives = 85/116 (73.28%), Query Frame = 0

Query: 1   MEDY---RSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQM-EIKESQFKKAKTP 60
           MEDY   R YGNG    A+  G    +P +SYDLRSYS+SY QTQ+   ++ + KK K+ 
Sbjct: 1   MEDYNRARQYGNGTMQMASYYGPPPPRPASSYDLRSYSSSYPQTQVGSNRDLKLKKGKSA 60

Query: 61  SGSVSKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 113
           SG  SKSW+F DPEFQRKKRVA+YKMYSVEGKMKGS R SFRWLK K  QV+YGWW
Sbjct: 61  SGLSSKSWAFGDPEFQRKKRVASYKMYSVEGKMKGSLRRSFRWLKDKYTQVLYGWW 116

BLAST of MS008632 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-22
Identity = 61/115 (53.04%), Postives = 70/115 (60.87%), Query Frame = 0

Query: 1   MEDY---RSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPS 60
           MED+   R YG+G        GN         D RSYSASY   +  I    +   K  S
Sbjct: 1   MEDFGRQRPYGDGGMQIQPYHGNQGG------DFRSYSASYGTRENNI----YDVKKEKS 60

Query: 61  GSVSKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 113
            + SKSW   DPE QRKKRVA+YKMY VEGK+KGSFRNSFRWLK++  QVVYGWW
Sbjct: 61  IARSKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGWW 105

BLAST of MS008632 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-19
Identity = 53/117 (45.30%), Postives = 68/117 (58.12%), Query Frame = 0

Query: 1   MEDY--RSYGNG-------FSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFK 60
           MEDY  RSYG+G       +S    ++G  +       DLRSYS SY      I E Q  
Sbjct: 1   MEDYRSRSYGDGRTSDLQQYSAHRRSDGPDSFSGNGMQDLRSYSTSYTDYPTRIPEDQ-- 60

Query: 61  KAKTPSGSVSKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVV 109
             K    S S SW F DP+ QRKKRV +Y+ Y+VEGK+KGSFR SF+W+K KC +++
Sbjct: 61  NPKKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLL 115

BLAST of MS008632 vs. TAIR 10
Match: AT3G13910.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-11
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 0

Query: 9   NGFSGDANTEGNYAAKPRNSYDLRSYSASYAQT---QMEIKESQFKKAKTPSGSVSKSWS 68
           N +   A+     A K  NS      +   +QT   Q++IK+S  K       + S+SWS
Sbjct: 3   NYYEPPASGNRRDAVKGYNSGSFDDSAGDQSQTNDYQLKIKKS--KSVPNADRAASRSWS 62

Query: 69  FADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLK 102
           F+DPE +RK+RVA YK+YSVE KMKGS R SF+W K
Sbjct: 63  FSDPESRRKRRVAGYKVYSVEQKMKGSIRKSFKWFK 96

BLAST of MS008632 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-10
Identity = 35/110 (31.82%), Postives = 54/110 (49.09%), Query Frame = 0

Query: 4   YRSYGNGFSGDANTEGNYAAKPRNSYDLRSYSASYAQTQMEIKESQFKKAKTPSGSVSKS 63
           Y  + +G   ++            SY   +Y+A   Q    +++    K+K  +    K 
Sbjct: 20  YHCFSHGEKSESEPTNQQPPVMMRSYSTSTYNA--YQNPTIVRDDSNNKSKRSNKVKKKG 79

Query: 64  W-SFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWLKRKCEQVVYGWW 113
           +    + E QRKKRVA+Y +Y VEG++KGS + SF+W K  C   VYG W
Sbjct: 80  FKGLCEAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYGLW 127

BLAST of MS008632 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-10
Identity = 29/70 (41.43%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 42  QMEIKESQFKKAKTPSGS-VSKSWSFADPEFQRKKRVANYKMYSVEGKMKGSFRNSFRWL 101
           +M  K+   +  ++ S S + K W + DPE +RK+RVA YK+YS EGKMK + R S++W+
Sbjct: 55  KMSYKDMPVRPRRSSSHSTLFKGW-WNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWI 114

Query: 102 KRKCEQVVYG 111
           K +C ++++G
Sbjct: 115 KIQCSKIIHG 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022136638.18.0e-57100.00uncharacterized protein LOC111008293 [Momordica charantia] >XP_022158308.1 uncha... [more]
XP_038896667.18.0e-4987.50uncharacterized protein LOC120084929 [Benincasa hispida][more]
KAA0064509.15.7e-4784.82uncharacterized protein E6C27_scaffold255G002260 [Cucumis melo var. makuwa] >TYK... [more]
XP_011654415.12.9e-4683.93uncharacterized protein LOC101210762 [Cucumis sativus] >KGN55347.1 hypothetical ... [more]
KAG7024353.12.9e-3875.00hypothetical protein SDJN02_13167, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C8413.9e-57100.00uncharacterized protein LOC111008293 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A5D3D9512.8e-4784.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L4141.4e-4683.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646210 PE=4 SV=1[more]
A0A6J1IF424.0e-3874.11uncharacterized protein LOC111476369 OS=Cucurbita maxima OX=3661 GN=LOC111476369... [more]
A0A5N6RKJ11.3e-2862.93Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017975 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G11970.11.1e-2253.04Protein of unknown function (DUF3511) [more]
AT2G19460.13.2e-1945.30Protein of unknown function (DUF3511) [more]
AT3G13910.11.1e-1143.75Protein of unknown function (DUF3511) [more]
AT1G72720.14.6e-1031.82Protein of unknown function (DUF3511) [more]
AT3G05725.17.8e-1041.43Protein of unknown function (DUF3511) [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 66..110
e-value: 2.5E-25
score: 88.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR33193:SF54DUF3511 DOMAIN PROTEINcoord: 1..111
NoneNo IPR availablePANTHERPTHR33193DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATEDcoord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS008632.1MS008632.1mRNA