MS008602 (gene) Bitter gourd (TR) v1

Overview


Name	MS008602
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	G-protein coupled receptor 1
Location	scaffold4: 2530941 .. 2531144 (-)
RNA-Seq Expression	MS008602
Synteny	MS008602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCGTCGTGCGAGCTGCCGGGAATATCCCCGTCTATGATCGTCGGCTGCTCACGGCGGTCAATGCCGGAGCCTCCAGTATGTCGTTCGTGGGATCAGGATTCATAGTGCTCTGCTATGTCCTCTTCAAAGAGCTTCGCAAGTTCTCCTTCAAGCTTATCTTCTACCTTGCCCTCTCCGTGCGTATCTTCTTCTTCTAC

mRNA sequence

ATGGCAGCCGTCGTGCGAGCTGCCGGGAATATCCCCGTCTATGATCGTCGGCTGCTCACGGCGGTCAATGCCGGAGCCTCCAGTATGTCGTTCGTGGGATCAGGATTCATAGTGCTCTGCTATGTCCTCTTCAAAGAGCTTCGCAAGTTCTCCTTCAAGCTTATCTTCTACCTTGCCCTCTCCGTGCGTATCTTCTTCTTCTAC

Coding sequence (CDS)

ATGGCAGCCGTCGTGCGAGCTGCCGGGAATATCCCCGTCTATGATCGTCGGCTGCTCACGGCGGTCAATGCCGGAGCCTCCAGTATGTCGTTCGTGGGATCAGGATTCATAGTGCTCTGCTATGTCCTCTTCAAAGAGCTTCGCAAGTTCTCCTTCAAGCTTATCTTCTACCTTGCCCTCTCCGTGCGTATCTTCTTCTTCTAC

Protein sequence

MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLALSVRIFFFY

Homology

[Close]

BLAST of MS008602 vs. NCBI nr
Match: XP_022142712.1 (G-protein coupled receptor 1 [Momordica charantia] >XP_022142718.1 G-protein coupled receptor 1 [Momordica charantia])

HSP 1 Score: 103.6 bits (257), Expect = 6.9e-19
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60
          MAAVVRAAG I VYDRRLLTAVNAGASS+SFVGSGFIVLCYVLFKELRKFSFKLIFYLAL
Sbjct: 1  MAAVVRAAGYILVYDRRLLTAVNAGASSLSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60

Query: 61 SVRIFFFY 69
          S  +  F+
Sbjct: 61 SDMLCSFF 68

[Close]

BLAST of MS008602 vs. NCBI nr
Match: KAF3446120.1 (hypothetical protein FNV43_RR11299 [Rhamnella rubrinervis])

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-15
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60
          M+  V+AAGN+  +DR +LTA+NAGASS+SFVGSGFIVLCYVLFKELRKFSFKL+FYLAL
Sbjct: 1  MSPTVQAAGNLMAHDRGVLTAINAGASSLSFVGSGFIVLCYVLFKELRKFSFKLVFYLAL 60

Query: 61 SVRIFFFY 69
          S  +  F+
Sbjct: 61 SDMLCSFF 68

[Close]

BLAST of MS008602 vs. NCBI nr
Match: XP_021805280.1 (G-protein coupled receptor 1 isoform X1 [Prunus avium] >PQP99246.1 G-protein coupled receptor 1 isoform X1 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-15
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60
          MAA  + AG +  YDR++LTAVNAGA+S+SFVGSGFIVLCYVLFKELRKFSFKL+FYLAL
Sbjct: 1  MAATGQVAGGLTAYDRQVLTAVNAGAASLSFVGSGFIVLCYVLFKELRKFSFKLVFYLAL 60

Query: 61 SVRIFFFY 69
          S  +  F+
Sbjct: 61 SDMLCSFF 68

[Close]

BLAST of MS008602 vs. NCBI nr
Match: XP_004303451.1 (PREDICTED: G-protein coupled receptor 1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-15
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60
          MAA  + AG +  YDR++LTAVNAGA+S+SFVGSGFIVLCYVLFKELRKFSFKL+FYLAL
Sbjct: 1  MAATGQVAGGLTAYDRQVLTAVNAGAASLSFVGSGFIVLCYVLFKELRKFSFKLVFYLAL 60

Query: 61 SVRIFFFY 69
          S  +  F+
Sbjct: 61 SDMLCSFF 68

[Close]

BLAST of MS008602 vs. NCBI nr
Match: XP_021805281.1 (G-protein coupled receptor 1 isoform X2 [Prunus avium] >PQQ18288.1 G-protein coupled receptor 1 isoform X2 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-15
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60
          MAA  + AG +  YDR++LTAVNAGA+S+SFVGSGFIVLCYVLFKELRKFSFKL+FYLAL
Sbjct: 1  MAATGQVAGGLTAYDRQVLTAVNAGAASLSFVGSGFIVLCYVLFKELRKFSFKLVFYLAL 60

Query: 61 SVRIFFFY 69
          S  +  F+
Sbjct: 61 SDMLCSFF 68

[Close]

BLAST of MS008602 vs. ExPASy Swiss-Prot
Match: O04714 (G-protein coupled receptor 1 OS=Arabidopsis thaliana OX=3702 GN=GCR1 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-15
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 1  MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60
          M+AV+ A G +   DR ++TA+N GASS+SFVGS FIVLCY LFKELRKFSFKL+FYLAL
Sbjct: 1  MSAVLTAGGGLTAGDRSIITAINTGASSLSFVGSAFIVLCYCLFKELRKFSFKLVFYLAL 60

Query: 61 SVRIFFFY 69
          S  +  F+
Sbjct: 61 SDMLCSFF 68

[Close]

BLAST of MS008602 vs. ExPASy TrEMBL
Match: A0A6J1CNM7 (G-protein coupled receptor 1 OS=Momordica charantia OX=3673 GN=LOC111012755 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.3e-19
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60
          MAAVVRAAG I VYDRRLLTAVNAGASS+SFVGSGFIVLCYVLFKELRKFSFKLIFYLAL
Sbjct: 1  MAAVVRAAGYILVYDRRLLTAVNAGASSLSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60

Query: 61 SVRIFFFY 69
          S  +  F+
Sbjct: 61 SDMLCSFF 68

[Close]

BLAST of MS008602 vs. ExPASy TrEMBL
Match: A0A314Y1J3 (G-protein coupled receptor 1 isoform X1 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_27466 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60
          MAA  + AG +  YDR++LTAVNAGA+S+SFVGSGFIVLCYVLFKELRKFSFKL+FYLAL
Sbjct: 1  MAATGQVAGGLTAYDRQVLTAVNAGAASLSFVGSGFIVLCYVLFKELRKFSFKLVFYLAL 60

Query: 61 SVRIFFFY 69
          S  +  F+
Sbjct: 61 SDMLCSFF 68

[Close]

BLAST of MS008602 vs. ExPASy TrEMBL
Match: A0A314ZM39 (G-protein coupled receptor 1 isoform X2 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_39108 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60
          MAA  + AG +  YDR++LTAVNAGA+S+SFVGSGFIVLCYVLFKELRKFSFKL+FYLAL
Sbjct: 1  MAATGQVAGGLTAYDRQVLTAVNAGAASLSFVGSGFIVLCYVLFKELRKFSFKLVFYLAL 60

Query: 61 SVRIFFFY 69
          S  +  F+
Sbjct: 61 SDMLCSFF 68

[Close]

BLAST of MS008602 vs. ExPASy TrEMBL
Match: A0A6P5RW00 (G-protein coupled receptor 1 isoform X2 OS=Prunus avium OX=42229 GN=LOC110749477 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60
          MAA  + AG +  YDR++LTAVNAGA+S+SFVGSGFIVLCYVLFKELRKFSFKL+FYLAL
Sbjct: 1  MAATGQVAGGLTAYDRQVLTAVNAGAASLSFVGSGFIVLCYVLFKELRKFSFKLVFYLAL 60

Query: 61 SVRIFFFY 69
          S  +  F+
Sbjct: 61 SDMLCSFF 68

[Close]

BLAST of MS008602 vs. ExPASy TrEMBL
Match: A0A6P5RK57 (G-protein coupled receptor 1 isoform X1 OS=Prunus avium OX=42229 GN=LOC110749477 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60
          MAA  + AG +  YDR++LTAVNAGA+S+SFVGSGFIVLCYVLFKELRKFSFKL+FYLAL
Sbjct: 1  MAATGQVAGGLTAYDRQVLTAVNAGAASLSFVGSGFIVLCYVLFKELRKFSFKLVFYLAL 60

Query: 61 SVRIFFFY 69
          S  +  F+
Sbjct: 61 SDMLCSFF 68

[Close]

BLAST of MS008602 vs. TAIR 10
Match: AT1G48270.1 (G-protein-coupled receptor 1 )

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-16
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 1  MAAVVRAAGNIPVYDRRLLTAVNAGASSMSFVGSGFIVLCYVLFKELRKFSFKLIFYLAL 60
          M+AV+ A G +   DR ++TA+N GASS+SFVGS FIVLCY LFKELRKFSFKL+FYLAL
Sbjct: 1  MSAVLTAGGGLTAGDRSIITAINTGASSLSFVGSAFIVLCYCLFKELRKFSFKLVFYLAL 60

Query: 61 SVRIFFFY 69
          S  +  F+
Sbjct: 61 SDMLCSFF 68

The following BLAST results are available for this feature:

BLAST of MS008602 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142712.1	6.9e-19	86.76	G-protein coupled receptor 1 [Momordica charantia] >XP_022142718.1 G-protein cou...	[more]
KAF3446120.1	2.1e-15	72.06	hypothetical protein FNV43_RR11299 [Rhamnella rubrinervis]	[more]
XP_021805280.1	3.5e-15	72.06	G-protein coupled receptor 1 isoform X1 [Prunus avium] >PQP99246.1 G-protein cou...	[more]
XP_004303451.1	3.5e-15	72.06	PREDICTED: G-protein coupled receptor 1 [Fragaria vesca subsp. vesca]	[more]
XP_021805281.1	3.5e-15	72.06	G-protein coupled receptor 1 isoform X2 [Prunus avium] >PQQ18288.1 G-protein cou...	[more]

BLAST of MS008602 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04714	2.1e-15	64.71	G-protein coupled receptor 1 OS=Arabidopsis thaliana OX=3702 GN=GCR1 PE=1 SV=1	[more]

BLAST of MS008602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNM7	3.3e-19	86.76	G-protein coupled receptor 1 OS=Momordica charantia OX=3673 GN=LOC111012755 PE=4...	[more]
A0A314Y1J3	1.7e-15	72.06	G-protein coupled receptor 1 isoform X1 OS=Prunus yedoensis var. nudiflora OX=20...	[more]
A0A314ZM39	1.7e-15	72.06	G-protein coupled receptor 1 isoform X2 OS=Prunus yedoensis var. nudiflora OX=20...	[more]
A0A6P5RW00	1.7e-15	72.06	G-protein coupled receptor 1 isoform X2 OS=Prunus avium OX=42229 GN=LOC110749477...	[more]
A0A6P5RK57	1.7e-15	72.06	G-protein coupled receptor 1 isoform X1 OS=Prunus avium OX=42229 GN=LOC110749477...	[more]

BLAST of MS008602 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48270.1	1.5e-16	64.71	G-protein-coupled receptor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022340	G protein-coupled receptor GCR1 putative	PRINTS	PR02000	GCR1PLANT	coord: 36..50 score: 86.11 coord: 19..34 score: 65.1 coord: 52..68 score: 38.41
IPR022343	GCR1-cAMP receptor	PRINTS	PR02001	GCR1CAMPR	coord: 30..48 score: 55.95 coord: 49..64 score: 47.22
None	No IPR available	PANTHER	PTHR23112	G PROTEIN-COUPLED RECEPTOR 157-RELATED	coord: 15..61
None	No IPR available	PANTHER	PTHR23112:SF0	TRANSMEMBRANE PROTEIN 116	coord: 15..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008602.1	MS008602.1	mRNA