MS008508 (gene) Bitter gourd (TR) v1

Overview


Name	MS008508
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Auxin-responsive protein
Location	scaffold4: 1891459 .. 1892736 (-)
RNA-Seq Expression	MS008508
Synteny	MS008508

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTCAACTTGAGCTAGCGCTTTCTATATCAGATCCCACCAGAGGTTTCGACCTGAACAGAAATGGCTGCGATGGGAAAGATATGTTTGGTTCAGATCTGAGGAGCCGTTGTGCCGAAAGCAGTAGCCAACACAAGCGTGGATTTGAAGATGCTTTCTGTAAGAGCAAAGACTCGTCTAAAGAGCTGTCTTTGCTGCTGTGGAGCGGTCAACCAAACAAGGAAGATGATGACAGAAAGGACACCAACCAGAGAAGCTCTTGTGCCATTCACTTGTGAGTTCCATTTACACATCTGATATTTTATTTTAAGAACATTATTGATCGATTCATGAGGGACACTGGTATCTAACTACTTGAGCTATGTTTAGTCCGCAAGATAACATTCATGTTTAGTCTTAGATGTACAAAAATCATGCTTCAAATAATGTACAAACGAACTTTTTTAAATATATATTTCTCTATACTAAGTTAAACTATAGGTTTTATTTTAAATGATGGGTCGGCTTTCATTTCCAACCTTAGAATATAGTACAGACAGACATCTAAGGTTGTGATGCATTTGTTCTGTCATCGAGCATCTAGACTGATGATTTGTTACCATTTTCCATAATTCCATTACAGTAATGCTAGAGAAGAGAACAAAGTTGTGGGGTGGCCACCCATTAAATCATGGAGGAAAAAGCACCTTCATCAGCTGCAACAGGATGGCCTAGGCTACCATTATTGGATGGAAGAGAATGAAGATGATGGAATAGTTTTCAACCCAATATATGTGAAGGTGAAGATGGAGGGGGTGCCAATAGCAAGGAAGATTGATGTGGGGCTGTATAACTCTTATGAGACGCTGAAAACTGCCTTGATCAACATGTTTGCCAATTCTTCTCGTGAGTGACTAGTACTTTTAACTATTTTTCTTCTCTTCCAAAATAAATCAGCCAAATTTTTGAAAACTAAAGATAAAGTTTTCTTAAACTCGTTTTTGTTTTTTGTGTTTTTAAAATTTGACTAAGAATTCATGAGTGTTTCTAGTAACTAAAAAGCTAAACATATATATAAATAAGTCTTAATTTTATTTTGTTTTAAAAAACAAACAACAAAAACAAAATAGTTATCAAAATGAGTAATTACTTCGTTGTGGATGCTGATTGGTAATTAGAATGTTGGTGTTTTCTTATGAACAGATCAGAAGTGTGGGAATGATAATGCCAGCTTTACCCTCACCTATCAGGACAAAGAAGGAGATTGGCTGCTGGCAGGCGATCTTCCATGGCAG

mRNA sequence

ATGGAGCTTCAACTTGAGCTAGCGCTTTCTATATCAGATCCCACCAGAGGTTTCGACCTGAACAGAAATGGCTGCGATGGGAAAGATATGTTTGGTTCAGATCTGAGGAGCCGTTGTGCCGAAAGCAGTAGCCAACACAAGCGTGGATTTGAAGATGCTTTCTGTAAGAGCAAAGACTCGTCTAAAGAGCTGTCTTTGCTGCTGTGGAGCGGTCAACCAAACAAGGAAGATGATGACAGAAAGGACACCAACCAGAGAAGCTCTTGTGCCATTCACTTTAATGCTAGAGAAGAGAACAAAGTTGTGGGGTGGCCACCCATTAAATCATGGAGGAAAAAGCACCTTCATCAGCTGCAACAGGATGGCCTAGGCTACCATTATTGGATGGAAGAGAATGAAGATGATGGAATAGTTTTCAACCCAATATATGTGAAGGTGAAGATGGAGGGGGTGCCAATAGCAAGGAAGATTGATGTGGGGCTGTATAACTCTTATGAGACGCTGAAAACTGCCTTGATCAACATGTTTGCCAATTCTTCTCATCAGAAGTGTGGGAATGATAATGCCAGCTTTACCCTCACCTATCAGGACAAAGAAGGAGATTGGCTGCTGGCAGGCGATCTTCCATGGCAG

Coding sequence (CDS)

ATGGAGCTTCAACTTGAGCTAGCGCTTTCTATATCAGATCCCACCAGAGGTTTCGACCTGAACAGAAATGGCTGCGATGGGAAAGATATGTTTGGTTCAGATCTGAGGAGCCGTTGTGCCGAAAGCAGTAGCCAACACAAGCGTGGATTTGAAGATGCTTTCTGTAAGAGCAAAGACTCGTCTAAAGAGCTGTCTTTGCTGCTGTGGAGCGGTCAACCAAACAAGGAAGATGATGACAGAAAGGACACCAACCAGAGAAGCTCTTGTGCCATTCACTTTAATGCTAGAGAAGAGAACAAAGTTGTGGGGTGGCCACCCATTAAATCATGGAGGAAAAAGCACCTTCATCAGCTGCAACAGGATGGCCTAGGCTACCATTATTGGATGGAAGAGAATGAAGATGATGGAATAGTTTTCAACCCAATATATGTGAAGGTGAAGATGGAGGGGGTGCCAATAGCAAGGAAGATTGATGTGGGGCTGTATAACTCTTATGAGACGCTGAAAACTGCCTTGATCAACATGTTTGCCAATTCTTCTCATCAGAAGTGTGGGAATGATAATGCCAGCTTTACCCTCACCTATCAGGACAAAGAAGGAGATTGGCTGCTGGCAGGCGATCTTCCATGGCAG

Protein sequence

MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDSSKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQDGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSSHQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ

Homology

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BLAST of MS008508 vs. NCBI nr
Match: XP_022134502.1 (auxin-responsive protein IAA29 isoform X1 [Momordica charantia])

HSP 1 Score: 443.4 bits (1139), Expect = 1.1e-120
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDS 60
           MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDS
Sbjct: 65  MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDS 124

Query: 61  SKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQ 120
           SKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQ
Sbjct: 125 SKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQ 184

Query: 121 DGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSS 180
           DGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSS
Sbjct: 185 DGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSS 244

Query: 181 HQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
           HQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ
Sbjct: 245 HQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 275

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BLAST of MS008508 vs. NCBI nr
Match: XP_022134565.1 (auxin-responsive protein IAA28 isoform X2 [Momordica charantia])

HSP 1 Score: 443.4 bits (1139), Expect = 1.1e-120
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDS 60
           MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDS
Sbjct: 1   MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDS 60

Query: 61  SKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQ 120
           SKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQ
Sbjct: 61  SKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQ 120

Query: 121 DGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSS 180
           DGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSS
Sbjct: 121 DGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSS 180

Query: 181 HQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
           HQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ
Sbjct: 181 HQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 211

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BLAST of MS008508 vs. NCBI nr
Match: XP_038896899.1 (auxin-responsive protein IAA29-like [Benincasa hispida])

HSP 1 Score: 363.2 bits (931), Expect = 1.5e-96
Identity = 180/215 (83.72%), Postives = 193/215 (89.77%), Query Frame = 0


Query: 1   MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRS-RCAESSS--QHKRGFEDAFCKS 60
           MEL+LELALS+ DPTRGFDLNRN CDGKD+FG D RS  CAES+S  +HKRGFEDAF KS
Sbjct: 1   MELELELALSVPDPTRGFDLNRNVCDGKDVFGLDTRSCLCAESTSHGRHKRGFEDAFFKS 60

Query: 61  KDSSKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQ 120
           KDS KELSLLLWSG PNKEDDDRKDT+QRSSCAIH NA E NKVVGWPPIKSWRKKHLH 
Sbjct: 61  KDSFKELSLLLWSGHPNKEDDDRKDTDQRSSCAIHINAGENNKVVGWPPIKSWRKKHLHG 120

Query: 121 LQQDGLGY-HYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMF 180
           LQQDG G  +YWMEE+EDDGIVFNP YVKVKMEG+PIARKIDVGLYNSY+TLKTALI+MF
Sbjct: 121 LQQDGPGSDNYWMEEDEDDGIVFNPKYVKVKMEGMPIARKIDVGLYNSYQTLKTALIDMF 180

Query: 181 ANSSHQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
           +NS +QKCGN NAS TLTYQDKEGDWLLAGDLPWQ
Sbjct: 181 SNSCYQKCGNSNASLTLTYQDKEGDWLLAGDLPWQ 215

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BLAST of MS008508 vs. NCBI nr
Match: KAG6591567.1 (Auxin-responsive protein IAA29, partial [Cucurbita argyrosperma subsp. sororia] >KAG6591604.1 Auxin-responsive protein IAA29, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 352.4 bits (903), Expect = 2.6e-93
Identity = 174/219 (79.45%), Postives = 193/219 (88.13%), Query Frame = 0


Query: 1   MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRS-RCAESSS--QHKRGFEDAFCKS 60
           MELQLELAL +SDPTRGFDLNR  CDGKD+FGSD RS  CAES+S  +HKRG+EDAF KS
Sbjct: 1   MELQLELALCVSDPTRGFDLNRAACDGKDVFGSDPRSCLCAESTSHGRHKRGYEDAFFKS 60

Query: 61  KDSSKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQ 120
           KDS KELSLLLWSG PNKEDDD KDTNQRSSCA+H NA EENKV+GWPPIKSWRKK+LH+
Sbjct: 61  KDSFKELSLLLWSGHPNKEDDDWKDTNQRSSCALHINAGEENKVMGWPPIKSWRKKYLHE 120

Query: 121 LQQDGLG-----YHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTAL 180
           LQQDG G      HYWMEE+EDD IVFNP YVKVKMEGVPIARKIDVGLY+SY+TLKTAL
Sbjct: 121 LQQDGFGSDQIPNHYWMEEDEDDEIVFNPKYVKVKMEGVPIARKIDVGLYSSYQTLKTAL 180

Query: 181 INMFANSSHQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
           I+MF++S +QKCG+ NA+ TLTYQ+KEGDWLLAGDLPWQ
Sbjct: 181 IHMFSDSCYQKCGSSNANLTLTYQNKEGDWLLAGDLPWQ 219

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BLAST of MS008508 vs. NCBI nr
Match: XP_022937068.1 (auxin-responsive protein IAA28 isoform X2 [Cucurbita moschata])

HSP 1 Score: 350.9 bits (899), Expect = 7.7e-93
Identity = 173/219 (79.00%), Postives = 193/219 (88.13%), Query Frame = 0


Query: 1   MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRS-RCAESSS--QHKRGFEDAFCKS 60
           MELQLELAL +SDPTRGFDLNR  CDGKD+FGSD RS  CAES+S  +HKRG+EDAF KS
Sbjct: 1   MELQLELALCVSDPTRGFDLNRAACDGKDVFGSDPRSCLCAESTSHGRHKRGYEDAFFKS 60

Query: 61  KDSSKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQ 120
           KDS KELSLLLWSG PNKEDDD KDTNQRSSCA+H NA EENKV+GWPPIKSWRKK+LH+
Sbjct: 61  KDSFKELSLLLWSGHPNKEDDDWKDTNQRSSCALHINAGEENKVMGWPPIKSWRKKYLHE 120

Query: 121 LQQDGLG-----YHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTAL 180
           LQQDG G      HYWMEE+EDD IVFNP YVKVKMEGVPIARKIDVGLY+SY+TL+TAL
Sbjct: 121 LQQDGFGSDQIPNHYWMEEDEDDEIVFNPKYVKVKMEGVPIARKIDVGLYSSYQTLETAL 180

Query: 181 INMFANSSHQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
           I+MF++S +QKCG+ NA+ TLTYQ+KEGDWLLAGDLPWQ
Sbjct: 181 IHMFSDSCYQKCGSSNANLTLTYQNKEGDWLLAGDLPWQ 219

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BLAST of MS008508 vs. ExPASy Swiss-Prot
Match: Q93WC4 (Auxin-responsive protein IAA29 OS=Arabidopsis thaliana OX=3702 GN=IAA29 PE=1 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-22
Identity = 77/242 (31.82%), Postives = 117/242 (48.35%), Query Frame = 0


Query: 3   LQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSS-----QHKRGFEDAF--- 62
           ++L+L LS+S P +   L          F  DL   CA   +       K  FE  F   
Sbjct: 1   MELDLGLSLS-PHKSSKLG---------FNFDLNKHCAIEGAASCLGTEKLRFEATFGLG 60

Query: 63  -CKSKDSSKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKK 122
             +      +  L   +GQPN+ED+D  ++    S  ++ +  E ++VVGWPP+K+   K
Sbjct: 61  NVEENCYMPKQRLFALNGQPNEEDEDPLES---ESSIVYDDEEENSEVVGWPPVKTCMIK 120

Query: 123 -----HLHQLQQDGLGYHY-WMEENEDDGIVFNP------------------IYVKVKME 182
                H H        YH+        +  + NP                  +YVKVKM+
Sbjct: 121 YGSYHHRHIRNHHHCPYHHRGRRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKMD 180

Query: 183 GVPIARKIDVGLYNSYETLKTALINMFANSSHQKCGNDNASFTLTYQDKEGDWLLAGDLP 212
           GV IARK+D+ L+NSYE+L  +LI MF  + ++ C  ++ ++T T+Q KEGDWLL GD+ 
Sbjct: 181 GVAIARKVDIKLFNSYESLTNSLITMF--TEYEDCDREDTNYTFTFQGKEGDWLLRGDVT 227

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BLAST of MS008508 vs. ExPASy Swiss-Prot
Match: O24542 (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.4e-18
Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 100 KVVGWPPIKSWRKKHLHQLQQDGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDV 159
           +VVGWPPI+S+RK ++ Q ++         EE+E +G     +YVKV M G P  RKID+
Sbjct: 70  QVVGWPPIRSYRKNNVQQKKE---------EESEGNG-----MYVKVSMAGAPYLRKIDL 129

Query: 160 GLYNSYETLKTALINMFA---NSSHQKCGNDNASFTLTYQDKEGDWLLAGDLPW 211
            +Y SY  L  AL NMF        ++ G + + +  TY+DK+GDW+L GD+PW
Sbjct: 130 KVYKSYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPW 169

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BLAST of MS008508 vs. ExPASy Swiss-Prot
Match: Q75GB1 (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 59/174 (33.91%), Postives = 93/174 (53.45%), Query Frame = 0


Query: 47  KRGFEDAFCKSKDSSKELSLLLWSGQ---PNKEDDDRKDTNQRSSCAIHFNAREENKVVG 106
           KRGF D   +   +S   +     G+     +ED+D ++ +++ + A    A +  +VVG
Sbjct: 62  KRGFSDE-ARPLPASAAAAAAAGKGKKAAAGEEDEDAEEEDKKVAAAPQAPAAKA-QVVG 121

Query: 107 WPPIKSWRKKHL--HQLQQDGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGL 166
           WPPI+S+RK  +  +QL+          E  +  G     +YVKV M+G P  RK+D+  
Sbjct: 122 WPPIRSYRKNTMATNQLKSSKED----AEAKQGQGF----LYVKVSMDGAPYLRKVDLKT 181

Query: 167 YNSYETLKTALINMFANSSHQKCG----NDNASFTLTYQDKEGDWLLAGDLPWQ 212
           Y +Y+ L TAL  MF   +  K G      +  + LTY+DK+GDW+L GD+PW+
Sbjct: 182 YKNYKDLSTALEKMFIGFTTGKDGLSESRKDGEYVLTYEDKDGDWMLVGDVPWE 225

[Close]

BLAST of MS008508 vs. ExPASy Swiss-Prot
Match: Q9ZSY8 (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 52/131 (39.69%), Postives = 69/131 (52.67%), Query Frame = 0


Query: 100 KVVGWPPIKSWRKKHLHQLQQDGLGYHYWMEENEDDGIVFNP-IYVKVKMEGVPIARKID 159
           +VVGWPPI+S+RK  +   Q    G +   EE E       P +YVKV MEG P  RKID
Sbjct: 143 QVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKID 202

Query: 160 VGLYNSYETLKTALINMFA------NSSHQKCGND------------NASFTLTYQDKEG 212
           +  Y SY  L +AL  MF+        SH  CG D             + + +TY+DK+ 
Sbjct: 203 LKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDS 262

[Close]

BLAST of MS008508 vs. ExPASy Swiss-Prot
Match: Q38822 (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-16
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 100 KVVGWPPIKSWRKKHLHQLQQDGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDV 159
           ++VGWPP++S+RK ++   + +         E+E  G     IYVKV M+G P  RKID+
Sbjct: 64  QIVGWPPVRSYRKNNIQSKKNE--------SEHEGQG-----IYVKVSMDGAPYLRKIDL 123

Query: 160 GLYNSYETLKTALINMF---ANSSHQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
             Y  Y  L  AL  MF        ++ G   + F  TY+DK+GDW+L GD+PW+
Sbjct: 124 SCYKGYSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWE 165

[Close]

BLAST of MS008508 vs. ExPASy TrEMBL
Match: A0A6J1BYM0 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111006703 PE=3 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 5.5e-121
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDS 60
           MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDS
Sbjct: 1   MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDS 60

Query: 61  SKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQ 120
           SKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQ
Sbjct: 61  SKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQ 120

Query: 121 DGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSS 180
           DGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSS
Sbjct: 121 DGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSS 180

Query: 181 HQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
           HQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ
Sbjct: 181 HQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 211

[Close]

BLAST of MS008508 vs. ExPASy TrEMBL
Match: A0A6J1BZS9 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111006703 PE=3 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 5.5e-121
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDS 60
           MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDS
Sbjct: 65  MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSSQHKRGFEDAFCKSKDS 124

Query: 61  SKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQ 120
           SKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQ
Sbjct: 125 SKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQ 184

Query: 121 DGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSS 180
           DGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSS
Sbjct: 185 DGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSS 244

Query: 181 HQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
           HQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ
Sbjct: 245 HQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 275

[Close]

BLAST of MS008508 vs. ExPASy TrEMBL
Match: A0A6J1FF02 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111443480 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.7e-93
Identity = 173/219 (79.00%), Postives = 193/219 (88.13%), Query Frame = 0


Query: 1   MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRS-RCAESSS--QHKRGFEDAFCKS 60
           MELQLELAL +SDPTRGFDLNR  CDGKD+FGSD RS  CAES+S  +HKRG+EDAF KS
Sbjct: 1   MELQLELALCVSDPTRGFDLNRAACDGKDVFGSDPRSCLCAESTSHGRHKRGYEDAFFKS 60

Query: 61  KDSSKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQ 120
           KDS KELSLLLWSG PNKEDDD KDTNQRSSCA+H NA EENKV+GWPPIKSWRKK+LH+
Sbjct: 61  KDSFKELSLLLWSGHPNKEDDDWKDTNQRSSCALHINAGEENKVMGWPPIKSWRKKYLHE 120

Query: 121 LQQDGLG-----YHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTAL 180
           LQQDG G      HYWMEE+EDD IVFNP YVKVKMEGVPIARKIDVGLY+SY+TL+TAL
Sbjct: 121 LQQDGFGSDQIPNHYWMEEDEDDEIVFNPKYVKVKMEGVPIARKIDVGLYSSYQTLETAL 180

Query: 181 INMFANSSHQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
           I+MF++S +QKCG+ NA+ TLTYQ+KEGDWLLAGDLPWQ
Sbjct: 181 IHMFSDSCYQKCGSSNANLTLTYQNKEGDWLLAGDLPWQ 219

[Close]

BLAST of MS008508 vs. ExPASy TrEMBL
Match: A0A6J1ILE5 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111476655 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.8e-92
Identity = 173/219 (79.00%), Postives = 191/219 (87.21%), Query Frame = 0


Query: 1   MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRS-RCAESSS--QHKRGFEDAFCKS 60
           MELQLELAL +SDPTRGFDLNR  CDGKD+FGSD RS  CAES+S  +HKRG+EDAF KS
Sbjct: 1   MELQLELALCVSDPTRGFDLNRAACDGKDVFGSDPRSCLCAESTSHGRHKRGYEDAFFKS 60

Query: 61  KDSSKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQ 120
           KDS KELSLLLWSG PNKEDDD KDTNQRSSCA+H NA EENKV+GWPPIKSWRKK+LH+
Sbjct: 61  KDSFKELSLLLWSGHPNKEDDDWKDTNQRSSCALHINAGEENKVMGWPPIKSWRKKYLHE 120

Query: 121 LQQDGLG-----YHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTAL 180
           LQQDG G      HYWMEE+ED+ IVFNP YVKVKMEGVPIARKIDVGLY+SY+TLKTAL
Sbjct: 121 LQQDGFGSDQIPNHYWMEEDEDEEIVFNPKYVKVKMEGVPIARKIDVGLYSSYQTLKTAL 180

Query: 181 INMFANSSHQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
           I MF++S +QKCG+ NA  TLTYQ+KEGDWLLAGDLPWQ
Sbjct: 181 IPMFSDSCYQKCGSSNAILTLTYQNKEGDWLLAGDLPWQ 219

[Close]

BLAST of MS008508 vs. ExPASy TrEMBL
Match: A0A0A0LGM4 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_3G877650 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 3.1e-92
Identity = 172/216 (79.63%), Postives = 188/216 (87.04%), Query Frame = 0


Query: 1   MELQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRS-RCAESSS---QHKRGFEDAFCK 60
           MELQLEL LS+ DPTRGFDLNRN CDGKD+FGSD RS  CAES+S   ++KRGFEDAF K
Sbjct: 1   MELQLELELSVPDPTRGFDLNRNACDGKDVFGSDPRSYLCAESTSHGKRNKRGFEDAFFK 60

Query: 61  SKDSSKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLH 120
           +K S KE+SLLLW+G PNKEDDDRKDTNQRSSCAIH  A EENK VGWPPI SWRK+HLH
Sbjct: 61  TKGSFKEMSLLLWNGHPNKEDDDRKDTNQRSSCAIHIKAVEENKAVGWPPIASWRKRHLH 120

Query: 121 QLQQDGLGY-HYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINM 180
            LQQ G G  +YWMEE+EDDGIVFNP YVKVKMEGVPIARKIDVG+YNSY+TLKTA INM
Sbjct: 121 GLQQGGPGSDNYWMEEDEDDGIVFNPKYVKVKMEGVPIARKIDVGMYNSYQTLKTASINM 180

Query: 181 FANSSHQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
           F++S +QKCGN NAS TLTYQDKEGDWLLAGDLPWQ
Sbjct: 181 FSDSCYQKCGNSNASLTLTYQDKEGDWLLAGDLPWQ 216

[Close]

BLAST of MS008508 vs. TAIR 10
Match: AT4G32280.1 (indole-3-acetic acid inducible 29 )

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-23
Identity = 77/242 (31.82%), Postives = 117/242 (48.35%), Query Frame = 0


Query: 3   LQLELALSISDPTRGFDLNRNGCDGKDMFGSDLRSRCAESSS-----QHKRGFEDAF--- 62
           ++L+L LS+S P +   L          F  DL   CA   +       K  FE  F   
Sbjct: 1   MELDLGLSLS-PHKSSKLG---------FNFDLNKHCAIEGAASCLGTEKLRFEATFGLG 60

Query: 63  -CKSKDSSKELSLLLWSGQPNKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKK 122
             +      +  L   +GQPN+ED+D  ++    S  ++ +  E ++VVGWPP+K+   K
Sbjct: 61  NVEENCYMPKQRLFALNGQPNEEDEDPLES---ESSIVYDDEEENSEVVGWPPVKTCMIK 120

Query: 123 -----HLHQLQQDGLGYHY-WMEENEDDGIVFNP------------------IYVKVKME 182
                H H        YH+        +  + NP                  +YVKVKM+
Sbjct: 121 YGSYHHRHIRNHHHCPYHHRGRRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKMD 180

Query: 183 GVPIARKIDVGLYNSYETLKTALINMFANSSHQKCGNDNASFTLTYQDKEGDWLLAGDLP 212
           GV IARK+D+ L+NSYE+L  +LI MF  + ++ C  ++ ++T T+Q KEGDWLL GD+ 
Sbjct: 181 GVAIARKVDIKLFNSYESLTNSLITMF--TEYEDCDREDTNYTFTFQGKEGDWLLRGDVT 227

[Close]

BLAST of MS008508 vs. TAIR 10
Match: AT4G29080.1 (phytochrome-associated protein 2 )

HSP 1 Score: 91.7 bits (226), Expect = 7.8e-19
Identity = 52/131 (39.69%), Postives = 69/131 (52.67%), Query Frame = 0


Query: 100 KVVGWPPIKSWRKKHLHQLQQDGLGYHYWMEENEDDGIVFNP-IYVKVKMEGVPIARKID 159
           +VVGWPPI+S+RK  +   Q    G +   EE E       P +YVKV MEG P  RKID
Sbjct: 143 QVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKID 202

Query: 160 VGLYNSYETLKTALINMFA------NSSHQKCGND------------NASFTLTYQDKEG 212
           +  Y SY  L +AL  MF+        SH  CG D             + + +TY+DK+ 
Sbjct: 203 LKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDS 262

[Close]

BLAST of MS008508 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-17
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 100 KVVGWPPIKSWRKKHLHQLQQDGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDV 159
           ++VGWPP++S+RK ++   + +         E+E  G     IYVKV M+G P  RKID+
Sbjct: 64  QIVGWPPVRSYRKNNIQSKKNE--------SEHEGQG-----IYVKVSMDGAPYLRKIDL 123

Query: 160 GLYNSYETLKTALINMF---ANSSHQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
             Y  Y  L  AL  MF        ++ G   + F  TY+DK+GDW+L GD+PW+
Sbjct: 124 SCYKGYSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWE 165

[Close]

BLAST of MS008508 vs. TAIR 10
Match: AT5G25890.1 (indole-3-acetic acid inducible 28 )

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-17
Identity = 47/138 (34.06%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 74  NKEDDDRKDTNQRSSCAIHFNAREENKVVGWPPIKSWRKKHLHQLQQDGLGYHYWMEENE 133
           N  +  ++ ++ + +  +  N  E   VVGWPP++S R+    QL+++       M++ E
Sbjct: 22  NNINGSKQKSSTKETSFLSNNRVEVAPVVGWPPVRSSRRNLTAQLKEE-------MKKKE 81

Query: 134 DDGIVFNPIYVKVKMEGVPIARKIDVGLYNSYETLKTALINMFANSSHQKCGNDNASFTL 193
            D      +YVK+ MEGVPI RK+++  YN+Y+ L  A+  +F   S +   + N  +TL
Sbjct: 82  SD--EEKELYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLF---SKKDSWDLNRQYTL 141

Query: 194 TYQDKEGDWLLAGDLPWQ 212
            Y+D EGD +L GD+PW+
Sbjct: 142 VYEDTEGDKVLVGDVPWE 147

[Close]

BLAST of MS008508 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 85.1 bits (209), Expect = 7.3e-17
Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 100 KVVGWPPIKSWRKKHLHQLQQDGLGYHYWMEENEDDGIVFNPIYVKVKMEGVPIARKIDV 159
           ++VGWPP++S+RK ++   +           E+E  G      YVKV M+G P  RKID+
Sbjct: 62  QIVGWPPVRSYRKNNVQTKK----------SESEGQG-----NYVKVSMDGAPYLRKIDL 121

Query: 160 GLYNSYETLKTALINMF---ANSSHQKCGNDNASFTLTYQDKEGDWLLAGDLPWQ 212
            +Y  Y  L  +L NMF        ++ G   + F  TY+DK+GDW+L GD+PW+
Sbjct: 122 TMYKQYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWE 161

The following BLAST results are available for this feature:

BLAST of MS008508 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134502.1	1.1e-120	100.00	auxin-responsive protein IAA29 isoform X1 [Momordica charantia]	[more]
XP_022134565.1	1.1e-120	100.00	auxin-responsive protein IAA28 isoform X2 [Momordica charantia]	[more]
XP_038896899.1	1.5e-96	83.72	auxin-responsive protein IAA29-like [Benincasa hispida]	[more]
KAG6591567.1	2.6e-93	79.45	Auxin-responsive protein IAA29, partial [Cucurbita argyrosperma subsp. sororia] ...	[more]
XP_022937068.1	7.7e-93	79.00	auxin-responsive protein IAA28 isoform X2 [Cucurbita moschata]	[more]

BLAST of MS008508 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93WC4	4.3e-22	31.82	Auxin-responsive protein IAA29 OS=Arabidopsis thaliana OX=3702 GN=IAA29 PE=1 SV=...	[more]
O24542	6.4e-18	42.11	Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S...	[more]
Q75GB1	1.1e-17	33.91	Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17...	[more]
Q9ZSY8	1.1e-17	39.69	Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=...	[more]
Q38822	2.1e-16	38.26	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1	[more]

BLAST of MS008508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYM0	5.5e-121	100.00	Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111006703 PE=3 SV=...	[more]
A0A6J1BZS9	5.5e-121	100.00	Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111006703 PE=3 SV=...	[more]
A0A6J1FF02	3.7e-93	79.00	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111443480 PE=3 SV=1	[more]
A0A6J1ILE5	1.8e-92	79.00	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111476655 PE=3 SV=1	[more]
A0A0A0LGM4	3.1e-92	79.63	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_3G877650 PE=3 SV=1	[more]

BLAST of MS008508 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32280.1	3.1e-23	31.82	indole-3-acetic acid inducible 29	[more]
AT4G29080.1	7.8e-19	39.69	phytochrome-associated protein 2	[more]
AT1G04240.1	1.5e-17	38.26	AUX/IAA transcriptional regulator family protein	[more]
AT5G25890.1	3.3e-17	34.06	indole-3-acetic acid inducible 28	[more]
AT5G43700.1	7.3e-17	37.39	AUX/IAA transcriptional regulator family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 41..211 e-value: 4.7E-33 score: 115.0
None	No IPR available	GENE3D	3.10.20.90		coord: 134..211 e-value: 1.0E-23 score: 85.2
None	No IPR available	PANTHER	PTHR31734:SF44	AUXIN-RESPONSIVE PROTEIN IAA29	coord: 1..211
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 139..211
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 1..211
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 141..211 score: 24.518904

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008508.1	MS008508.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding