MS008480 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTTGAGAGTCAATTGTTCAGCGTCAGTTTTTCTCCTTCCACGAGCTCCCGATTCAAATTCCTTTGATACTTCAAAAGCCGCTCGATTGTCCTTGTAAGTATTGATCAACTTCATCTGCCAAAGACGGATCAATCGGTTTCAACATATATTTCTCATTTCCCCCCGATAAATTCTATTGGATTTCTTGATTCACTGCAGGAAGGAAGGTGAAGGATCGTGGAGAAGCCGCTGCGCATTAGGTTTAGCGAGCTTGATTCTCGCAATCGAATTCGGCAACGCCTTCGTCGCCGGCGAAATTCAGGCTCTCGAATCGCCACCGCCGCCGCAACTTGTTGATTCGAGGCGGATGAAGATCTCGAGATGGAGCGACAAGAGAAAATGCGCTCCGTGGAGAGCGAATTCGCTCGAGAACATCGTGCCGGAGAACCTCCCGAGACCGTCGCAGCGCCGGAAGTGGGAGACAGTTACATTTACGGTGGATGTAGAAACTAACGCTCCGGCGATCCAAGTAATTTCTTCTGAAACTAACTCCAAATATTGTTTCTCTTTA ATGGCTTTGAGAGTCAATTGTTCAGCGTCAGTTTTTCTCCTTCCACGAGCTCCCGATTCAAATTCCTTTGATACTTCAAAAGCCGCTCGATTGTCCTTGAAGGAAGGTGAAGGATCGTGGAGAAGCCGCTGCGCATTAGGTTTAGCGAGCTTGATTCTCGCAATCGAATTCGGCAACGCCTTCGTCGCCGGCGAAATTCAGGCTCTCGAATCGCCACCGCCGCCGCAACTTGTTGATTCGAGGCGGATGAAGATCTCGAGATGGAGCGACAAGAGAAAATGCGCTCCGTGGAGAGCGAATTCGCTCGAGAACATCGTGCCGGAGAACCTCCCGAGACCGTCGCAGCGCCGGAAGTGGGAGACAGTTACATTTACGGTGGATGTAGAAACTAACGCTCCGGCGATCCAAGTAATTTCTTCTGAAACTAACTCCAAATATTGTTTCTCTTTA ATGGCTTTGAGAGTCAATTGTTCAGCGTCAGTTTTTCTCCTTCCACGAGCTCCCGATTCAAATTCCTTTGATACTTCAAAAGCCGCTCGATTGTCCTTGAAGGAAGGTGAAGGATCGTGGAGAAGCCGCTGCGCATTAGGTTTAGCGAGCTTGATTCTCGCAATCGAATTCGGCAACGCCTTCGTCGCCGGCGAAATTCAGGCTCTCGAATCGCCACCGCCGCCGCAACTTGTTGATTCGAGGCGGATGAAGATCTCGAGATGGAGCGACAAGAGAAAATGCGCTCCGTGGAGAGCGAATTCGCTCGAGAACATCGTGCCGGAGAACCTCCCGAGACCGTCGCAGCGCCGGAAGTGGGAGACAGTTACATTTACGGTGGATGTAGAAACTAACGCTCCGGCGATCCAAGTAATTTCTTCTGAAACTAACTCCAAATATTGTTTCTCTTTA MALRVNCSASVFLLPRAPDSNSFDTSKAARLSLKEGEGSWRSRCALGLASLILAIEFGNAFVAGEIQALESPPPPQLVDSRRMKISRWSDKRKCAPWRANSLENIVPENLPRPSQRRKWETVTFTVDVETNAPAIQVISSETNSKYCFSL Homology
BLAST of MS008480 vs. NCBI nr
Match: XP_022138217.1 (uncharacterized protein LOC111009442 isoform X1 [Momordica charantia]) HSP 1 Score: 301.2 bits (770), Expect = 4.9e-78 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of MS008480 vs. NCBI nr
Match: XP_022138227.1 (uncharacterized protein LOC111009442 isoform X2 [Momordica charantia]) HSP 1 Score: 274.2 bits (700), Expect = 6.5e-70 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of MS008480 vs. NCBI nr
Match: XP_023524416.1 (uncharacterized protein LOC111788320 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 221.1 bits (562), Expect = 6.5e-54 Identity = 118/152 (77.63%), Postives = 130/152 (85.53%), Query Frame = 0
BLAST of MS008480 vs. NCBI nr
Match: KAG6608173.1 (hypothetical protein SDJN03_01515, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 210.3 bits (534), Expect = 1.1e-50 Identity = 114/147 (77.55%), Postives = 125/147 (85.03%), Query Frame = 0
BLAST of MS008480 vs. NCBI nr
Match: XP_038899075.1 (uncharacterized protein LOC120086473 [Benincasa hispida]) HSP 1 Score: 204.9 bits (520), Expect = 4.8e-49 Identity = 112/156 (71.79%), Postives = 130/156 (83.33%), Query Frame = 0
BLAST of MS008480 vs. ExPASy TrEMBL
Match: A0A6J1CAG3 (uncharacterized protein LOC111009442 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009442 PE=4 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 2.4e-78 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of MS008480 vs. ExPASy TrEMBL
Match: A0A6J1CAH3 (uncharacterized protein LOC111009442 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009442 PE=4 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 3.1e-70 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of MS008480 vs. ExPASy TrEMBL
Match: A0A6J1J2V8 (uncharacterized protein LOC111480783 OS=Cucurbita maxima OX=3661 GN=LOC111480783 PE=4 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 2.6e-48 Identity = 108/138 (78.26%), Postives = 118/138 (85.51%), Query Frame = 0
BLAST of MS008480 vs. ExPASy TrEMBL
Match: A0A5A7TBN7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007250 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 3.6e-42 Identity = 105/159 (66.04%), Postives = 121/159 (76.10%), Query Frame = 0
BLAST of MS008480 vs. ExPASy TrEMBL
Match: A0A6J1FJG9 (uncharacterized protein LOC111446015 OS=Cucurbita moschata OX=3662 GN=LOC111446015 PE=4 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 2.0e-40 Identity = 94/119 (78.99%), Postives = 102/119 (85.71%), Query Frame = 0
BLAST of MS008480 vs. TAIR 10
Match: AT2G25625.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 67.0 bits (162), Expect = 1.5e-11 Identity = 50/163 (30.67%), Postives = 78/163 (47.85%), Query Frame = 0
BLAST of MS008480 vs. TAIR 10
Match: AT2G25625.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.5 bits (158), Expect = 4.3e-11 Identity = 50/162 (30.86%), Postives = 82/162 (50.62%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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