MS008464 (gene) Bitter gourd (TR) v1

Overview


Name	MS008464
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Polyamine-modulated factor 1-binding protein
Location	scaffold4: 1608422 .. 1608884 (-)
RNA-Seq Expression	MS008464
Synteny	MS008464

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATATGTCACAACAGGTCCAAGGGGCTATGGAGAACATGCTTAGAATGATCAGGTTTGTTCATTATCAACAATAGCTCGATTTACTTTTTTGTTAAAAAAATATTGTGAGTAATGTCGTTAAAATAGTACAACTAGCACCGCCGCTTTGCTCTTTGTCGCCCTCCAACACCATCTATCTTCCCATTTCTCATCTGTCGATATCTGAATTTTTTCCACCCCCAATGACGCTGAAATTAATGGAATGTAACGTAATAATAGTACGTCCTAATGCTAACCGTAATCTTCTCTTTTTCAACCGTTTGCAGTGAAATTGATCAAAATGCTGTTGGAATAATGGAAGACATAGAGAAGTGCAGGGGTTCTGCTCTTGACAGGAAGGGAGTCCTCGAGGAAGAGAAACAACAATTTCAGCAAGCTGCTTACACTGTTTTAGACATGCTCAACAACAGACAGGGAACGCTG

mRNA sequence

GATATGTCACAACAGGTCCAAGGGGCTATGGAGAACATGCTTAGAATGATCAGTGAAATTGATCAAAATGCTGTTGGAATAATGGAAGACATAGAGAAGTGCAGGGGTTCTGCTCTTGACAGGAAGGGAGTCCTCGAGGAAGAGAAACAACAATTTCAGCAAGCTGCTTACACTGTTTTAGACATGCTCAACAACAGACAGGGAACGCTG

Coding sequence (CDS)

GATATGTCACAACAGGTCCAAGGGGCTATGGAGAACATGCTTAGAATGATCAGTGAAATTGATCAAAATGCTGTTGGAATAATGGAAGACATAGAGAAGTGCAGGGGTTCTGCTCTTGACAGGAAGGGAGTCCTCGAGGAAGAGAAACAACAATTTCAGCAAGCTGCTTACACTGTTTTAGACATGCTCAACAACAGACAGGGAACGCTG

Protein sequence

DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQGTL

Homology

[Close]

BLAST of MS008464 vs. NCBI nr
Match: XP_022140976.1 (uncharacterized protein LOC111011497 [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-28
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 60
          DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL
Sbjct: 28 DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 87

Query: 61 DMLNNRQGTL 71
          DMLNNRQGTL
Sbjct: 88 DMLNNRQGTL 97

[Close]

BLAST of MS008464 vs. NCBI nr
Match: XP_038898230.1 (uncharacterized protein LOC120085955 isoform X2 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 60
          D+SQQ QGAME+MLRMISEIDQNAVGI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL
Sbjct: 28 DISQQAQGAMESMLRMISEIDQNAVGIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 87

Query: 61 DMLNNRQGTL 71
          DMLNN +GTL
Sbjct: 88 DMLNNGEGTL 97

[Close]

BLAST of MS008464 vs. NCBI nr
Match: XP_038898231.1 (uncharacterized protein LOC120085955 isoform X3 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 60
          D+SQQ QGAME+MLRMISEIDQNAVGI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL
Sbjct: 28 DISQQAQGAMESMLRMISEIDQNAVGIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 87

Query: 61 DMLNNRQGTL 71
          DMLNN +GTL
Sbjct: 88 DMLNNGEGTL 97

[Close]

BLAST of MS008464 vs. NCBI nr
Match: XP_038898229.1 (uncharacterized protein LOC120085955 isoform X1 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 60
          D+SQQ QGAME+MLRMISEIDQNAVGI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL
Sbjct: 28 DISQQAQGAMESMLRMISEIDQNAVGIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 87

Query: 61 DMLNNRQGTL 71
          DMLNN +GTL
Sbjct: 88 DMLNNGEGTL 97

[Close]

BLAST of MS008464 vs. NCBI nr
Match: XP_008466349.1 (PREDICTED: uncharacterized protein LOC103503784 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1   DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 60
           D+SQQ QGAMENMLRMISEIDQNAVGI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL
Sbjct: 34  DISQQAQGAMENMLRMISEIDQNAVGIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 93

Query: 61  DMLNNRQG 69
           DMLNNR G
Sbjct: 94  DMLNNRGG 101

[Close]

BLAST of MS008464 vs. ExPASy TrEMBL
Match: A0A6J1CHL8 (uncharacterized protein LOC111011497 OS=Momordica charantia OX=3673 GN=LOC111011497 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.1e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 60
          DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL
Sbjct: 28 DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 87

Query: 61 DMLNNRQGTL 71
          DMLNNRQGTL
Sbjct: 88 DMLNNRQGTL 97

[Close]

BLAST of MS008464 vs. ExPASy TrEMBL
Match: A0A5A7TBQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007070 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1   DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 60
           D+SQQ QGAMENMLRMISEIDQNAVGI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL
Sbjct: 34  DISQQAQGAMENMLRMISEIDQNAVGIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 93

Query: 61  DMLNNRQG 69
           DMLNNR G
Sbjct: 94  DMLNNRGG 101

[Close]

BLAST of MS008464 vs. ExPASy TrEMBL
Match: A0A1S3CR82 (uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1   DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 60
           D+SQQ QGAMENMLRMISEIDQNAVGI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL
Sbjct: 34  DISQQAQGAMENMLRMISEIDQNAVGIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 93

Query: 61  DMLNNRQG 69
           DMLNNR G
Sbjct: 94  DMLNNRGG 101

[Close]

BLAST of MS008464 vs. ExPASy TrEMBL
Match: A0A6J1IGC1 (uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-25
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 2   MSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLD 61
           +SQQ QGAMENMLRMISEIDQNAVGI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLD
Sbjct: 37  ISQQAQGAMENMLRMISEIDQNAVGILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLD 96

Query: 62  MLNNRQGTL 71
           MLNN  GTL
Sbjct: 97  MLNNGGGTL 105

[Close]

BLAST of MS008464 vs. ExPASy TrEMBL
Match: A0A6J1FEZ1 (uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC111443468 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-25
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 2   MSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLD 61
           +SQQ QGAMENMLRMISEIDQNAVGI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLD
Sbjct: 37  ISQQAQGAMENMLRMISEIDQNAVGILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLD 96

Query: 62  MLNNRQGTL 71
           MLNN  GTL
Sbjct: 97  MLNNGGGTL 105

[Close]

BLAST of MS008464 vs. TAIR 10
Match: AT5G25570.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 90.1 bits (222), Expect = 7.5e-19
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 60
          +MSQQVQ  MENML+M+ EIDQN+VGI E+IEK +  A+++K +LEEEK QFQ+AAYT+L
Sbjct: 32 EMSQQVQMGMENMLKMVYEIDQNSVGIKEEIEKSKDFAMEKKRILEEEKDQFQKAAYTIL 91

Query: 61 DMLNNRQG 69
          DML+N +G
Sbjct: 92 DMLSNSRG 99

[Close]

BLAST of MS008464 vs. TAIR 10
Match: AT5G25570.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 90.1 bits (222), Expect = 7.5e-19
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 60
          +MSQQVQ  MENML+M+ EIDQN+VGI E+IEK +  A+++K +LEEEK QFQ+AAYT+L
Sbjct: 32 EMSQQVQMGMENMLKMVYEIDQNSVGIKEEIEKSKDFAMEKKRILEEEKDQFQKAAYTIL 91

Query: 61 DMLNNRQG 69
          DML+N +G
Sbjct: 92 DMLSNSRG 99

[Close]

BLAST of MS008464 vs. TAIR 10
Match: AT5G25570.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 90.1 bits (222), Expect = 7.5e-19
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   DMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVL 60
           +MSQQVQ  MENML+M+ EIDQN+VGI E+IEK +  A+++K +LEEEK QFQ+AAYT+L
Sbjct: 64  EMSQQVQMGMENMLKMVYEIDQNSVGIKEEIEKSKDFAMEKKRILEEEKDQFQKAAYTIL 123

Query: 61  DMLNNRQG 69
           DML+N +G
Sbjct: 124 DMLSNSRG 131

The following BLAST results are available for this feature:

BLAST of MS008464 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140976.1	1.7e-28	100.00	uncharacterized protein LOC111011497 [Momordica charantia]	[more]
XP_038898230.1	2.3e-25	91.43	uncharacterized protein LOC120085955 isoform X2 [Benincasa hispida]	[more]
XP_038898231.1	2.3e-25	91.43	uncharacterized protein LOC120085955 isoform X3 [Benincasa hispida]	[more]
XP_038898229.1	2.3e-25	91.43	uncharacterized protein LOC120085955 isoform X1 [Benincasa hispida]	[more]
XP_008466349.1	3.0e-25	94.12	PREDICTED: uncharacterized protein LOC103503784 [Cucumis melo]	[more]

BLAST of MS008464 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS008464 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHL8	8.1e-29	100.00	uncharacterized protein LOC111011497 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A5A7TBQ0	1.4e-25	94.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CR82	1.4e-25	94.12	uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=...	[more]
A0A6J1IGC1	3.2e-25	92.75	uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676...	[more]
A0A6J1FEZ1	3.2e-25	92.75	uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC1114434...	[more]

BLAST of MS008464 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25570.1	7.5e-19	64.71	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G25570.2	7.5e-19	64.71	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT5G25570.3	7.5e-19	64.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36800	POLYAMINE-MODULATED FACTOR 1-BINDING PROTEIN	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008464.1	MS008464.1	mRNA