MS008405 (gene) Bitter gourd (TR) v1

Overview


Name	MS008405
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP synthase subunit a, chloroplastic
Location	scaffold4: 1155064 .. 1155336 (+)
RNA-Seq Expression	MS008405
Synteny	MS008405

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGAATTAATGAAAACCGAACATAATCATTTAATCAACCCTATCAAGAATATTTATTCACCTCACGGAGAGTTAGCCGCACCCACAAATGATATAAATACTACCGTTGTTTTAGCTTTACTCACATCAATAGCATATTTCTATGCGGGTCTTAGCAAAAAAGGATTAGGTTATTTCGGTAAATACATTCAACCAACTCCAATCCTTTTACCCATTAACATCTTAGAAGATTTCACAAAACCCTTATCACTTAGTTTTCGACTTTTCGGAAAT

mRNA sequence

TTAGAATTAATGAAAACCGAACATAATCATTTAATCAACCCTATCAAGAATATTTATTCACCTCACGGAGAGTTAGCCGCACCCACAAATGATATAAATACTACCGTTGTTTTAGCTTTACTCACATCAATAGCATATTTCTATGCGGGTCTTAGCAAAAAAGGATTAGGTTATTTCGGTAAATACATTCAACCAACTCCAATCCTTTTACCCATTAACATCTTAGAAGATTTCACAAAACCCTTATCACTTAGTTTTCGACTTTTCGGAAAT

Coding sequence (CDS)

TTAGAATTAATGAAAACCGAACATAATCATTTAATCAACCCTATCAAGAATATTTATTCACCTCACGGAGAGTTAGCCGCACCCACAAATGATATAAATACTACCGTTGTTTTAGCTTTACTCACATCAATAGCATATTTCTATGCGGGTCTTAGCAAAAAAGGATTAGGTTATTTCGGTAAATACATTCAACCAACTCCAATCCTTTTACCCATTAACATCTTAGAAGATTTCACAAAACCCTTATCACTTAGTTTTCGACTTTTCGGAAAT

Protein sequence

LELMKTEHNHLINPIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGN

Homology

[Close]

BLAST of MS008405 vs. NCBI nr
Match: QHB74935.1 (ATP synthase CF0 subunit IV [Brunellia trianae] >QHB75022.1 ATP synthase CF0 subunit IV [Brunellia antioquensis])

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-32
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I+ PHGELAAPTNDINTTV LALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIHLPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. NCBI nr
Match: QXI85908.1 (ATP synthase CF0 subunit IV [Gentiana szechenyii])

HSP 1 Score: 147.9 bits (372), Expect = 4.2e-32
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P+K I  PHGELAAPTNDINTTV LALLTS+AYFYAGL+KKGLGYFGKYIQPTPILLPIN
Sbjct: 115 PLKVIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLTKKGLGYFGKYIQPTPILLPIN 174

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 175 ILEDFTKPLSLSFRLFGN 192

[Close]

BLAST of MS008405 vs. NCBI nr
Match: AFU97004.1 (AtpI, partial [Averrhoa carambola])

HSP 1 Score: 147.5 bits (371), Expect = 5.5e-32
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I  PHGELAAPTNDINTTV LALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 125 PWKIIQLPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 184

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 185 ILEDFTKPLSLSFRLFGN 202

[Close]

BLAST of MS008405 vs. NCBI nr
Match: QRN71791.1 (ATP synthase CF0 subunit IV [Phanera variegata var. variegata])

HSP 1 Score: 147.5 bits (371), Expect = 5.5e-32
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I  PHGELAAPTNDINTTV LALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIQLPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. NCBI nr
Match: YP_009338618.1 (ATPase subunit IV [Averrhoa carambola] >ANU80142.1 ATPase subunit IV [Averrhoa carambola] >ANY60289.1 ATP synthase CF0 subunit IV [Averrhoa carambola] >QWE50125.1 ATPase subunit IV [Averrhoa carambola])

HSP 1 Score: 147.5 bits (371), Expect = 5.5e-32
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I  PHGELAAPTNDINTTV LALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIQLPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. ExPASy Swiss-Prot
Match: Q56P09 (ATP synthase subunit a, chloroplastic OS=Lactuca sativa OX=4236 GN=atpI PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.5e-35
Identity = 72/78 (92.31%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I  PHGELAAPTNDINTTV LALLTS+AYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. ExPASy Swiss-Prot
Match: Q14FG9 (ATP synthase subunit a, chloroplastic OS=Populus alba OX=43335 GN=atpI PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.5e-35
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I  PHGELAAPTNDINTTV LALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. ExPASy Swiss-Prot
Match: A4GYP6 (ATP synthase subunit a, chloroplastic OS=Populus trichocarpa OX=3694 GN=atpI PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.5e-35
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I  PHGELAAPTNDINTTV LALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. ExPASy Swiss-Prot
Match: A7Y3B0 (ATP synthase subunit a, chloroplastic OS=Ipomoea purpurea OX=4121 GN=atpI PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-34
Identity = 72/78 (92.31%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I  PHGELAAPTNDINTTV LALLTS+AYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIQLPHGELAAPTNDINTTVALALLTSLAYFYAGLSKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. ExPASy Swiss-Prot
Match: Q0G9X4 (ATP synthase subunit a, chloroplastic OS=Daucus carota OX=4039 GN=atpI PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.6e-34
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I  PHGELAAPTNDINTTV LALLTS+AYFYAG+SKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIQLPHGELAAPTNDINTTVALALLTSVAYFYAGISKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. ExPASy TrEMBL
Match: A0A6B9M860 (ATP synthase subunit a, chloroplastic OS=Brunellia trianae OX=2695831 GN=atpI PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I+ PHGELAAPTNDINTTV LALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIHLPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. ExPASy TrEMBL
Match: A0A6B9LZ31 (ATP synthase subunit a, chloroplastic OS=Brunellia antioquensis OX=2695832 GN=atpI PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I+ PHGELAAPTNDINTTV LALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIHLPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. ExPASy TrEMBL
Match: M1JE33 (ATP synthase CF0 subunit IV OS=Alpinia zerumbet OX=97723 GN=atpI PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.7e-32
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I  PHGELAAPTNDINTTV LALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIQLPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. ExPASy TrEMBL
Match: A0A1B2CXU0 (ATP synthase subunit a, chloroplastic OS=Averrhoa carambola OX=28974 GN=atpI PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.7e-32
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I  PHGELAAPTNDINTTV LALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIQLPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. ExPASy TrEMBL
Match: A0A161CIL3 (ATP synthase subunit a, chloroplastic OS=Senna tora OX=362788 GN=atpI PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.7e-32
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I  PHGELAAPTNDINTTV LALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN
Sbjct: 116 PWKIIQLPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 175

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 176 ILEDFTKPLSLSFRLFGN 193

[Close]

BLAST of MS008405 vs. TAIR 10
Match: ATCG00150.1 (ATPase, F0 complex, subunit A protein )

HSP 1 Score: 141.7 bits (356), Expect = 2.8e-34
Identity = 70/78 (89.74%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 14  PIKNIYSPHGELAAPTNDINTTVVLALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPIN 73
           P K I  P GELAAPTNDINTTV LALLTS+AYFYAGLSKKGLGYF KYIQPTPILLPIN
Sbjct: 118 PWKIIQLPQGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPIN 177

Query: 74  ILEDFTKPLSLSFRLFGN 92
           ILEDFTKPLSLSFRLFGN
Sbjct: 178 ILEDFTKPLSLSFRLFGN 195

The following BLAST results are available for this feature:

BLAST of MS008405 vs. NCBI nr


Match Name	E-value	Identity	Description
QHB74935.1	2.5e-32	93.59	ATP synthase CF0 subunit IV [Brunellia trianae] >QHB75022.1 ATP synthase CF0 sub...	[more]
QXI85908.1	4.2e-32	91.03	ATP synthase CF0 subunit IV [Gentiana szechenyii]	[more]
AFU97004.1	5.5e-32	93.59	AtpI, partial [Averrhoa carambola]	[more]
QRN71791.1	5.5e-32	93.59	ATP synthase CF0 subunit IV [Phanera variegata var. variegata]	[more]
YP_009338618.1	5.5e-32	93.59	ATPase subunit IV [Averrhoa carambola] >ANU80142.1 ATPase subunit IV [Averrhoa c...	[more]

BLAST of MS008405 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56P09	9.5e-35	92.31	ATP synthase subunit a, chloroplastic OS=Lactuca sativa OX=4236 GN=atpI PE=3 SV=...	[more]
Q14FG9	9.5e-35	93.59	ATP synthase subunit a, chloroplastic OS=Populus alba OX=43335 GN=atpI PE=3 SV=1	[more]
A4GYP6	9.5e-35	93.59	ATP synthase subunit a, chloroplastic OS=Populus trichocarpa OX=3694 GN=atpI PE=...	[more]
A7Y3B0	1.2e-34	92.31	ATP synthase subunit a, chloroplastic OS=Ipomoea purpurea OX=4121 GN=atpI PE=3 S...	[more]
Q0G9X4	1.6e-34	91.03	ATP synthase subunit a, chloroplastic OS=Daucus carota OX=4039 GN=atpI PE=3 SV=1	[more]

BLAST of MS008405 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6B9M860	1.2e-32	93.59	ATP synthase subunit a, chloroplastic OS=Brunellia trianae OX=2695831 GN=atpI PE...	[more]
A0A6B9LZ31	1.2e-32	93.59	ATP synthase subunit a, chloroplastic OS=Brunellia antioquensis OX=2695832 GN=at...	[more]
M1JE33	2.7e-32	93.59	ATP synthase CF0 subunit IV OS=Alpinia zerumbet OX=97723 GN=atpI PE=3 SV=1	[more]
A0A1B2CXU0	2.7e-32	93.59	ATP synthase subunit a, chloroplastic OS=Averrhoa carambola OX=28974 GN=atpI PE=...	[more]
A0A161CIL3	2.7e-32	93.59	ATP synthase subunit a, chloroplastic OS=Senna tora OX=362788 GN=atpI PE=3 SV=1	[more]

BLAST of MS008405 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00150.1	2.8e-34	89.74	ATPase, F0 complex, subunit A protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..91
None	No IPR available	CDD	cd00310	ATP-synt_Fo_a_6	coord: 25..91 e-value: 2.84106E-18 score: 72.0468
IPR035908	ATP synthase, F0 complex, subunit A superfamily	GENE3D	1.20.120.220	ATP synthase, F0 complex, subunit A	coord: 2..91 e-value: 1.4E-16 score: 63.1
IPR035908	ATP synthase, F0 complex, subunit A superfamily	SUPERFAMILY	81336	F1F0 ATP synthase subunit A	coord: 19..91
IPR000568	ATP synthase, F0 complex, subunit A	PFAM	PF00119	ATP-synt_A	coord: 25..91 e-value: 1.8E-18 score: 67.2
IPR045082	ATP synthase, F0 complex, subunit A, bacterial/chloroplast	PANTHER	PTHR42823	ATP SYNTHASE SUBUNIT A, CHLOROPLASTIC	coord: 11..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008405.1	MS008405.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	proton transmembrane transporter activity