MS008379 (gene) Bitter gourd (TR) v1

Overview
NameMS008379
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpre-rRNA-processing protein TSR2 homolog
Locationscaffold4: 980832 .. 983395 (+)
RNA-Seq ExpressionMS008379
SyntenyMS008379
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGACCCTGCAAATCGTCGTCTCCCAGCAGATGCTTTTCCATTATTCCAGGGAGGTATCAAGTGTGTATTATCTCGTTGGTCAGCTCTTCAGTTGGCGGTGGAAAATGAATGGGGTGGTCGTGACTCGCTTCGTAAATCGGAACTATTGTGCTCCGATATTTTCACGTGGTTTACTCAAAACAAAGGTAATTTTGCTCCCATCCCCTTGGATGTCCTTGGTACCTATTTTCATGCATTGTTCCTCAGCTCGTATTCTGTTGTTTGATCAGTTTCGCTGGCCCAGTATTCTGTAACTTTTCAAACGATTACATGTTTCTTTGGTGAGAAGTAGTTTCTATAGACATGGGAAATGGAATTCATCAAATGGCGATATTACTTGTATGATTTTTCTTCAAATAACAATTGTATAATTTCTGCTGTCATGTACTGGCATGTTAATTTCTTTCAGAAATATAAGTTCTAGATCGTATTTTGAATCTTTGATATTCACTTTGGTCAATCAATGCTCTGAATTTTCTTCCTAGAAGAAATTAACATACTCTTTAGTTATTTTGAATTTTTTTGGATGATGGTTGATTCGTAGTGGAACTTGATACCATGTTAGCATGTTGTTTATAGTTTTATGTCGGAATAATTCCTATGATTATCTTGATCTGAGAAAGTTATAATTATCTTGCAGAGACCCTTTATGTCGATGATTTAGAAATTATTCTCAACGAAGCTATGCTTTCGTTGAATACTGAGGTTGATGATGGTAGCATCGAGGAGGTACATGCACATTTATATACCTTTCAATCCTTGTTAGTCTTTGACGAAATCCTGTTTTCTCATAGCTAAGGGGGTCCTTTTTTGTTCCACATGATGAGGTAGCATGCTGTTATTTAAGACTTAGTTAATGCAGATATTTGTGTGAACTGGTTAGTTTTGAAATTCATCCTCTTAATCAACTAAATTTATTGGATATTGTGTTTACTAATGACTAACTAGTGTTGATGGATGGTTTTTCTACCCAATCCGACTTCTGATGGTTCTCAATCTGATTTCTATAAATGAAGTTCTGTCAGGGAAATTAAGAAAAAATTGCTTCTACCTCTTAGTCTTGTTGGTTGGAATAGTTTGAGATGCTGTTGAATATTTACTTCCTGTCTATAACTTTTAGTTTTAGCTGTTTATCGTTGTGTCTCTGACTTTAGATGATAGATGCTTGGAAGACGGTGGTGATTGTATAAATACCTTCCTAGTGGAACCTGATGTAGTTCATTAGTTTTCAAATCTATTTACTTTTACATCCACGTTGAAGGGCAATTTCGTTCCTTTGTAGTCATTTTCACCTCTTTGTAGGAGGCAACTTAAAAAGTTACATACTAATAAACTTGTCCAATCACATTTTGTACCAGCACCACACTCATTTTTTTGTTTTCCTCCTCTTTTATTAGAATACTTGGTTGAAGTAGAAGAATAAGATACAAATAGAGAAAACGTGGATGTGATAATAAATGTTGAGTGAGAATTGAGATCGTCAAATTTATTATCATGTATTATTATTACCTCTGAAAAGTGATATTTGTTACCCTGATGTTGCTGATAGGAATCACCCTTAGGGTAATAAAGGGATATTATTAGAGTATCGAGGGTACCTTAGTAATTAGATAGGAAAGTGGTTAGGGAGTGTTGTTATAAAAGAATGGAGGTGCAAGGATGAAGGTATCCAATGGAGTGAGTATGGTTTAGGCTTGAGTAAGAATACTCAAGAGAGGAGGGGAGGGTCCAAGTACCTCAAATTACTTGGTAGTTCTAGTATTTCTTGTTTGGGTTCTAACAGTTGCTCCTTCAAGAATTGAGATTTTTTTATTAATGGGTTTTTGTTGCTTGTGTTTCTTATCCAACGATGCAGGTAGCTGACAAAATGATTGATATGTATGAGGATTGTTTGGATGGTAACTATGAATCTATTGAAAATCTAATGCAATCCCAACCACCACGGGTTGCTCATTCTCATGTTAGTCAGGTAACATGAAGTATTTCCTAAACTGTTCTTTTGAAAGTTCCACTTTAAAGTAAGAATATATATTAAAAGGAACTCGCTATCCAATAGTGTGATTTTGGGATTACAAATTAGCTCTGCTGATTCTTATTCCTTGGTCTACACTGCCATAACTTATAGCCAAAAAAACTTGCTGAAGGAGTAATAGTGCCACCTTTGCAGTTATAGTGTATCAGCTTATGGATCATTATTGCATTTTTTCAGAAAATATTTCATTCATGGTGTAAAACAAACATTCTCTCGTTATAAAGCATATTCTAATCTTGATTGTGATGAATATTAAGGTTGTGAGTGACGATGAAGAAGAGGAAGACGATGACGACGACGATGCTAAAAATGCAAGAGATGCCATGAGGAATGATGGTTCGTCAGATATGATGGTGGATGCCATAGAATACCAATCTAATTCTACTTCACAACCCAAGCGTGTCAATCAGCCCAACCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACGTCAAGGAGAAATAGGGGTAATAGAAAT

mRNA sequence

ATGGAAGACCCTGCAAATCGTCGTCTCCCAGCAGATGCTTTTCCATTATTCCAGGGAGGTATCAAGTGTGTATTATCTCGTTGGTCAGCTCTTCAGTTGGCGGTGGAAAATGAATGGGGTGGTCGTGACTCGCTTCGTAAATCGGAACTATTGTGCTCCGATATTTTCACGTGGTTTACTCAAAACAAAGAGACCCTTTATGTCGATGATTTAGAAATTATTCTCAACGAAGCTATGCTTTCGTTGAATACTGAGGTTGATGATGGTAGCATCGAGGAGGTAGCTGACAAAATGATTGATATGTATGAGGATTGTTTGGATGGTAACTATGAATCTATTGAAAATCTAATGCAATCCCAACCACCACGGGTTGCTCATTCTCATGTTAGTCAGGTTGTGAGTGACGATGAAGAAGAGGAAGACGATGACGACGACGATGCTAAAAATGCAAGAGATGCCATGAGGAATGATGGTTCGTCAGATATGATGGTGGATGCCATAGAATACCAATCTAATTCTACTTCACAACCCAAGCGTGTCAATCAGCCCAACCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACGTCAAGGAGAAATAGGGGTAATAGAAAT

Coding sequence (CDS)

ATGGAAGACCCTGCAAATCGTCGTCTCCCAGCAGATGCTTTTCCATTATTCCAGGGAGGTATCAAGTGTGTATTATCTCGTTGGTCAGCTCTTCAGTTGGCGGTGGAAAATGAATGGGGTGGTCGTGACTCGCTTCGTAAATCGGAACTATTGTGCTCCGATATTTTCACGTGGTTTACTCAAAACAAAGAGACCCTTTATGTCGATGATTTAGAAATTATTCTCAACGAAGCTATGCTTTCGTTGAATACTGAGGTTGATGATGGTAGCATCGAGGAGGTAGCTGACAAAATGATTGATATGTATGAGGATTGTTTGGATGGTAACTATGAATCTATTGAAAATCTAATGCAATCCCAACCACCACGGGTTGCTCATTCTCATGTTAGTCAGGTTGTGAGTGACGATGAAGAAGAGGAAGACGATGACGACGACGATGCTAAAAATGCAAGAGATGCCATGAGGAATGATGGTTCGTCAGATATGATGGTGGATGCCATAGAATACCAATCTAATTCTACTTCACAACCCAAGCGTGTCAATCAGCCCAACCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACGTCAAGGAGAAATAGGGGTAATAGAAAT

Protein sequence

MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQPPRVAHSHVSQVVSDDEEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVNQPNPEATAEAEDGWVQVTSRRNRGNRN
Homology
BLAST of MS008379 vs. NCBI nr
Match: XP_022137141.1 (pre-rRNA-processing protein TSR2 homolog [Momordica charantia])

HSP 1 Score: 401.4 bits (1030), Expect = 4.9e-108
Identity = 206/208 (99.04%), Postives = 206/208 (99.04%), Query Frame = 0

Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT
Sbjct: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ
Sbjct: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120

Query: 121 PPRVAHSHVSQVVSDDEEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRV 180
           PPRVAHSHVSQVVSDDEEEE DDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRV
Sbjct: 121 PPRVAHSHVSQVVSDDEEEE-DDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRV 180

Query: 181 NQPNPEATAEAEDGWVQVTSRRNRGNRN 209
            QPNPEATAEAEDGWVQVTSRRNRGNRN
Sbjct: 181 YQPNPEATAEAEDGWVQVTSRRNRGNRN 207

BLAST of MS008379 vs. NCBI nr
Match: XP_023524387.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.6 bits (714), Expect = 2.1e-71
Identity = 153/209 (73.21%), Postives = 169/209 (80.86%), Query Frame = 0

Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           ME   NR LPADAFPLFQ GI  VLSRWSALQLAV+NEWGGRDS RK ELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLY+DDLE+IL+E MLSLNT+VDDGSIEEVA+K+I M+E+C+DGN+ SIE L QS 
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 121 PPRVAHSHVSQVVSDDEEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRV 180
             R AHSHVSQ +SDDEEEEDDDDD   N  D MRN    DMMVDAI+ Q     QP+ V
Sbjct: 121 LLRGAHSHVSQAMSDDEEEEDDDDDGG-NGSDGMRN----DMMVDAIQQQQ---QQPRAV 180

Query: 181 NQPNPEATAEAEDGWVQVTSRR-NRGNRN 209
           NQP PEA+A AEDGWVQVTSRR +RG RN
Sbjct: 181 NQPRPEASAPAEDGWVQVTSRRSSRGTRN 201

BLAST of MS008379 vs. NCBI nr
Match: XP_022940503.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata])

HSP 1 Score: 277.7 bits (709), Expect = 8.1e-71
Identity = 153/211 (72.51%), Postives = 171/211 (81.04%), Query Frame = 0

Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           M+   NR LPADAFPLFQ GI  VLSRWSALQLAV+NEWGGRDS RK ELLCSDIFTWFT
Sbjct: 1   MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLY+DDLE+IL+E MLSLNT+VDDGSIEEVA+K+I M+E+C+DGN+ SIE L QS 
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 121 PPRVAHSHVSQVVSDD-EEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKR 180
            PR AHSHVSQ +SDD EEEE+DDDDD  N  D MRN    DMMVDAI+ Q     QP+ 
Sbjct: 121 LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRN----DMMVDAIQQQ----QQPRA 180

Query: 181 VNQP-NPEATAEAEDGWVQVTSRR-NRGNRN 209
           VNQP  PEA+A AEDGWVQVTSRR +RG RN
Sbjct: 181 VNQPRRPEASAPAEDGWVQVTSRRSSRGTRN 203

BLAST of MS008379 vs. NCBI nr
Match: KAG6608259.1 (Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.9 bits (699), Expect = 1.2e-69
Identity = 153/212 (72.17%), Postives = 171/212 (80.66%), Query Frame = 0

Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           M+   NR LPADAFPLFQ GI  VLSRWSALQLAV+NEWGGRDS RK ELLCSDIFTWFT
Sbjct: 47  MDGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 106

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLY+DDLE+IL+E MLSLNT+VDDGSIEEVA+K+I M+E+C+DGN+ SIE L QS 
Sbjct: 107 QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 166

Query: 121 PPR-VAHSHVSQVVSDD-EEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPK 180
            PR  AHSHVSQ +SDD EEEEDDDDDD  N  D MRN    DMMVDAI+ Q     QP+
Sbjct: 167 LPRGGAHSHVSQAMSDDEEEEEDDDDDDGGNGSDGMRN----DMMVDAIQQQQQ--QQPR 226

Query: 181 RVNQP-NPEATAEAEDGWVQVTSRR-NRGNRN 209
            VNQP  PEA++ AEDGWVQVTSRR +RG RN
Sbjct: 227 AVNQPRRPEASSPAEDGWVQVTSRRSSRGTRN 252

BLAST of MS008379 vs. NCBI nr
Match: XP_022982103.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 270.0 bits (689), Expect = 1.7e-68
Identity = 151/214 (70.56%), Postives = 168/214 (78.50%), Query Frame = 0

Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           ME   NR LPADAFPLFQ GI  VLSRWSALQLAV+NEWGGRDS RK ELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLY+DDLE+IL+E MLSLNT+VDDGSIEEVA+K+I M+E+C+DGN+ SI  L QS 
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 121 PPRVAHSHVSQVVSDDEEEE----DDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQ 180
            PR AHSHVSQ +SD+EEEE    DDDD D  N  D MRN    DMMVDAI+       Q
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGDVGNGSDGMRN----DMMVDAIQ------QQ 180

Query: 181 PKRVN-QPNPEATAEAEDGWVQVTSRR-NRGNRN 209
           P+ VN QP PEA+A AEDGWVQVTSRR +RG RN
Sbjct: 181 PRAVNQQPRPEASAPAEDGWVQVTSRRSSRGTRN 204

BLAST of MS008379 vs. ExPASy Swiss-Prot
Match: Q06672 (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR2 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-09
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = 0

Query: 17  FQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVDDLEIILN 76
           F+ G+  V+ +W AL +AVEN WGG DS  K + +   +   F +N++ +    +E  L 
Sbjct: 32  FELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLF-KNEKVVDAALIEETLL 91

Query: 77  EAML-SLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQPPRVAHSHVSQVV-- 136
            AM+    T V+D S   +A ++I++Y DC + NY  +E L      +       +VV  
Sbjct: 92  YAMIDEFETNVEDDSALPIAVEVINIYNDCFNLNYNKVEKLYLEWQEKQRTKKSKRVVHI 151

Query: 137 -----SDDEEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPK 179
                 DDE+ ED DD+D     D +  D  S      ++       QPK
Sbjct: 152 EGDDDEDDEDVEDYDDEDEDEEMDEVVPDLVSSKPEPIVDEDGFELVQPK 200

BLAST of MS008379 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09
Identity = 50/189 (26.46%), Postives = 95/189 (50.26%), Query Frame = 0

Query: 16  LFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVDDLEIIL 75
           +F   ++ VL  W  LQ+AV+N +GG  S +K+E +   +  +FT N + L  D++E  +
Sbjct: 11  VFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGD-LQPDEVEDFI 70

Query: 76  NEAMLS-LNTEVDDGSIEEVADKMIDMYEDCLDGNYESI-ENLMQSQPPRVAHSHVSQVV 135
           +E M +  +T VDDGS+ +VA ++  M++ C  G    + E +++    + +        
Sbjct: 71  SELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQKKTSSGRAKATP 130

Query: 136 SDDEEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVNQPNPEATAEAED 195
           +   +++DDDD++     +AM  +G S          + ++     VN  + E   E +D
Sbjct: 131 AQTPQDDDDDDEE-----EAMDCEGGS----------AGASVSSTAVNDLHHE--EEEDD 181

Query: 196 GWVQVTSRR 203
           GW  V  ++
Sbjct: 191 GWTVVRRKK 181

BLAST of MS008379 vs. ExPASy Swiss-Prot
Match: Q3T090 (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.4e-09
Identity = 52/192 (27.08%), Postives = 94/192 (48.96%), Query Frame = 0

Query: 12  DAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVDDL 71
           D+  LF   ++  L  W ALQ+AVEN +GG  S  K+E L   +  +F +N + L +D++
Sbjct: 7   DSRALFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNAD-LELDEV 66

Query: 72  EIILNEAMLS-LNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQPPRVAHSHVS 131
           E  L E M++  +T V+DGS+ +V+ ++  M+     G+  +++ +      R      +
Sbjct: 67  EDFLGELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEMASLITQRKCKVRAT 126

Query: 132 QVVSDDEEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVNQPNPEATAE 191
            + +  E +EDDD +  +    A  NDG++    D +  Q     +P   +    +    
Sbjct: 127 ALPTAGETDEDDDANSVEEMEVAATNDGAA---TDGVCPQ----PEPSGPDSQTIKEEDI 186

Query: 192 AEDGWVQVTSRR 203
            EDGW  V  ++
Sbjct: 187 VEDGWTIVRRKK 190

BLAST of MS008379 vs. ExPASy Swiss-Prot
Match: Q3KPN2 (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 5.4e-09
Identity = 53/193 (27.46%), Postives = 89/193 (46.11%), Query Frame = 0

Query: 12  DAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVDDL 71
           D+  LF+   K VL  W  LQ+AVEN +GG  S  K+E +   I  +F+ N +    +  
Sbjct: 7   DSRGLFREATKAVLGSWPVLQIAVENGFGGSHSQEKAEWMVGAIDQYFSSNADLEQYEVE 66

Query: 72  EIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQ--SQPPRVAHSHV 131
           + I+       +T V+DGS   VA ++  ++  C  G   +++  +   +Q      + V
Sbjct: 67  DSIMGMMNDEFDTIVEDGSQALVAQQLCVLFSQCRQGETAAVQAKIAQLAQKKYDVRAKV 126

Query: 132 SQVVSDDEEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVNQPNPEATA 191
            +V   D+EEE  DD++   A D     GSS     ++      +S PK+  +P      
Sbjct: 127 QEVTPSDDEEESSDDEE--EAMDCENTPGSSS--AASLSGALGPSSAPKKEEEPE----- 186

Query: 192 EAEDGWVQVTSRR 203
             +DGW  V  ++
Sbjct: 187 --DDGWTVVRRKK 188

BLAST of MS008379 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-07
Identity = 51/196 (26.02%), Postives = 93/196 (47.45%), Query Frame = 0

Query: 12  DAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVDDL 71
           DA  LF+ G+   L  W ALQ+AVEN +GG  S  K++ L   +  +F +N + L +D++
Sbjct: 7   DARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNAD-LELDEV 66

Query: 72  EIILNEAMLS-LNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQPPRVAHSHVS 131
           E  L E + +  +T V+DGS+ +V+ ++  M+     G+  ++  +      R      +
Sbjct: 67  EDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKVTAT 126

Query: 132 QVVSDDEEEEDDDD-DDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVNQPNPEATA 191
            + +  E +ED+DD D  +       NDG++          ++        + P+ +   
Sbjct: 127 ALKTARETDEDEDDVDSVEEMEVTATNDGAA----------TDGVCPQPEPSDPDAQTIK 186

Query: 192 E---AEDGWVQVTSRR 203
           E    EDGW  V  ++
Sbjct: 187 EEDIVEDGWTIVRRKK 191

BLAST of MS008379 vs. ExPASy TrEMBL
Match: A0A6J1C5N0 (pre-rRNA-processing protein TSR2 homolog OS=Momordica charantia OX=3673 GN=LOC111008685 PE=3 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.4e-108
Identity = 206/208 (99.04%), Postives = 206/208 (99.04%), Query Frame = 0

Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT
Sbjct: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ
Sbjct: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120

Query: 121 PPRVAHSHVSQVVSDDEEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRV 180
           PPRVAHSHVSQVVSDDEEEE DDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRV
Sbjct: 121 PPRVAHSHVSQVVSDDEEEE-DDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRV 180

Query: 181 NQPNPEATAEAEDGWVQVTSRRNRGNRN 209
            QPNPEATAEAEDGWVQVTSRRNRGNRN
Sbjct: 181 YQPNPEATAEAEDGWVQVTSRRNRGNRN 207

BLAST of MS008379 vs. ExPASy TrEMBL
Match: A0A6J1FPH6 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446075 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.9e-71
Identity = 153/211 (72.51%), Postives = 171/211 (81.04%), Query Frame = 0

Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           M+   NR LPADAFPLFQ GI  VLSRWSALQLAV+NEWGGRDS RK ELLCSDIFTWFT
Sbjct: 1   MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLY+DDLE+IL+E MLSLNT+VDDGSIEEVA+K+I M+E+C+DGN+ SIE L QS 
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 121 PPRVAHSHVSQVVSDD-EEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKR 180
            PR AHSHVSQ +SDD EEEE+DDDDD  N  D MRN    DMMVDAI+ Q     QP+ 
Sbjct: 121 LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRN----DMMVDAIQQQ----QQPRA 180

Query: 181 VNQP-NPEATAEAEDGWVQVTSRR-NRGNRN 209
           VNQP  PEA+A AEDGWVQVTSRR +RG RN
Sbjct: 181 VNQPRRPEASAPAEDGWVQVTSRRSSRGTRN 203

BLAST of MS008379 vs. ExPASy TrEMBL
Match: A0A6J1J400 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481044 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 8.2e-69
Identity = 151/214 (70.56%), Postives = 168/214 (78.50%), Query Frame = 0

Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           ME   NR LPADAFPLFQ GI  VLSRWSALQLAV+NEWGGRDS RK ELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLY+DDLE+IL+E MLSLNT+VDDGSIEEVA+K+I M+E+C+DGN+ SI  L QS 
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 121 PPRVAHSHVSQVVSDDEEEE----DDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQ 180
            PR AHSHVSQ +SD+EEEE    DDDD D  N  D MRN    DMMVDAI+       Q
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGDVGNGSDGMRN----DMMVDAIQ------QQ 180

Query: 181 PKRVN-QPNPEATAEAEDGWVQVTSRR-NRGNRN 209
           P+ VN QP PEA+A AEDGWVQVTSRR +RG RN
Sbjct: 181 PRAVNQQPRPEASAPAEDGWVQVTSRRSSRGTRN 204

BLAST of MS008379 vs. ExPASy TrEMBL
Match: A0A6J1F8A7 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443017 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.8e-68
Identity = 145/208 (69.71%), Postives = 164/208 (78.85%), Query Frame = 0

Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           ME   NR LPA A PLFQ GI  VLSRWSALQLAVENEWGGRDS RK ELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKE LY+DDLE+IL+EA+LSLNT+VDDGSIEEVA+++I M+E+CLDGN+ SIE L QS 
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 PPRVAHSHVSQVVSDDEEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRV 180
            PRVA SHVSQV+SDD+EEED+++       D +  +G  DMMVDAI        QP  V
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEE-----GGDVVVGNGRRDMMVDAI--------QPTPV 180

Query: 181 NQPNPEATAEAEDGWVQVTSRRNRGNRN 209
           NQP PEATAEAEDGWVQVTSRR+RG RN
Sbjct: 181 NQPTPEATAEAEDGWVQVTSRRSRGTRN 195

BLAST of MS008379 vs. ExPASy TrEMBL
Match: A0A6J1IM14 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111476490 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 5.0e-66
Identity = 142/208 (68.27%), Postives = 162/208 (77.88%), Query Frame = 0

Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           ME   NR LPA A P FQ GI  VLSRWSALQLAVENEWGGRDS RK ELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKE LY+DDLE+IL+EA+LSLNT+VDDGSIEEVA+++I M+E+CLDGN+ SIE L QS 
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 PPRVAHSHVSQVVSDDEEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRV 180
            P+VA SHVSQV+SDDEEE++++  D          +G  DMMVDAI        QP+ V
Sbjct: 121 LPKVARSHVSQVMSDDEEEDEEEGGDVD------VGNGRRDMMVDAI--------QPRPV 180

Query: 181 NQPNPEATAEAEDGWVQVTSRRNRGNRN 209
           NQP PEATAEAEDGWVQVTSRR+RG RN
Sbjct: 181 NQPTPEATAEAEDGWVQVTSRRSRGTRN 194

BLAST of MS008379 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 125.6 bits (314), Expect = 4.8e-29
Identity = 78/204 (38.24%), Postives = 121/204 (59.31%), Query Frame = 0

Query: 6   NRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKET 65
           N  L  +A  + + GI  +L RW+A++ AVEN WGGRDS  K+    + +F +F Q+K+ 
Sbjct: 4   NATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDP 63

Query: 66  LY-VDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQPPRV 125
           +  ++ L  +L++ +  LNT  +DGS++EVA+ ++D+YEDC +GNYE +E L  +     
Sbjct: 64  VKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRATYSQTS 123

Query: 126 AHSHVSQVVSDDEEEEDDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVNQPN 185
           A   V +V + D+EE DD+DDD            ++DMMVDA    SN   +   V++P 
Sbjct: 124 A--SVVKVSNGDDEESDDEDDDQ-----------TTDMMVDA----SNQKQEAMPVDEP- 183

Query: 186 PEATAEAEDGWVQVTSRRNRGNRN 209
                 A+DGW  V+SR+N+G RN
Sbjct: 184 -----VADDGWTVVSSRKNKGKRN 184

BLAST of MS008379 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-17
Identity = 44/100 (44.00%), Postives = 72/100 (72.00%), Query Frame = 0

Query: 10  PADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVD 69
           P D   + Q  I  +LSRW  LQ+AV+N+WGG DSL+KS+ L  ++F   +Q+   + V+
Sbjct: 24  PMDDDSVLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQS-NVITVE 83

Query: 70  DLEIILNEA-MLSLNTEVDDGSIEEVADKMIDMYEDCLDG 109
           ++E +L+E+ +LS NTE++DGSIEEVA++++ ++E+ L G
Sbjct: 84  EIENLLHESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022137141.14.9e-10899.04pre-rRNA-processing protein TSR2 homolog [Momordica charantia][more]
XP_023524387.12.1e-7173.21pre-rRNA-processing protein TSR2 homolog [Cucurbita pepo subsp. pepo][more]
XP_022940503.18.1e-7172.51pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata][more]
KAG6608259.11.2e-6972.17Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma s... [more]
XP_022982103.11.7e-6870.56pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q066721.8e-0930.00Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508... [more]
Q3KRG33.2e-0926.46Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=... [more]
Q3T0905.4e-0927.08Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1[more]
Q3KPN25.4e-0927.46Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 ... [more]
Q969E81.7e-0726.02Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV... [more]
Match NameE-valueIdentityDescription
A0A6J1C5N02.4e-10899.04pre-rRNA-processing protein TSR2 homolog OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1FPH63.9e-7172.51pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1J4008.2e-6970.56pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1F8A71.8e-6869.71pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1IM145.0e-6668.27pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
Match NameE-valueIdentityDescription
AT5G27990.14.8e-2938.24Pre-rRNA-processing protein TSR2, conserved region [more]
AT3G22510.14.2e-1744.00Pre-rRNA-processing protein TSR2, conserved region [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019398Pre-rRNA-processing protein TSR2PFAMPF10273WGGcoord: 17..96
e-value: 5.0E-21
score: 75.0
IPR019398Pre-rRNA-processing protein TSR2PANTHERPTHR21250UNCHARACTERIZEDcoord: 5..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..183
NoneNo IPR availablePANTHERPTHR21250:SF4PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEINcoord: 5..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS008379.1MS008379.1mRNA