MS008122 (gene) Bitter gourd (TR) v1

Overview


Name	MS008122
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold703: 404271 .. 404582 (-)
RNA-Seq Expression	MS008122
Synteny	MS008122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTCCGAATCCTCCATTGAATCCCAGAAGCTCTGATCCAAAACGCAGCTCGGAGAAGAACCCAAATCCGTCGTCTTCTTCCTCGAGCATTCGATTTGCGATTCAGAATCAAAGCCCTGAAGAAACGGATGCTCAAGAAGCTCTTTCGCCGTCCATCGTTCTTTGGGGTCTTTTATCAAACAGTTGGCGACAAAATCCTTTGCCCTCTCCGAAAACCACACCGGAACCTCCGGCGACTCGCCGGAAAACCCAATTTTATACAGAGCCGCCACCGGATCATCCATCTCCGGCCACGGACGGTCGCCGG

mRNA sequence

ATGGAGTTTCCGAATCCTCCATTGAATCCCAGAAGCTCTGATCCAAAACGCAGCTCGGAGAAGAACCCAAATCCGTCGTCTTCTTCCTCGAGCATTCGATTTGCGATTCAGAATCAAAGCCCTGAAGAAACGGATGCTCAAGAAGCTCTTTCGCCGTCCATCGTTCTTTGGGGTCTTTTATCAAACAGTTGGCGACAAAATCCTTTGCCCTCTCCGAAAACCACACCGGAACCTCCGGCGACTCGCCGGAAAACCCAATTTTATACAGAGCCGCCACCGGATCATCCATCTCCGGCCACGGACGGTCGCCGG

Coding sequence (CDS)

ATGGAGTTTCCGAATCCTCCATTGAATCCCAGAAGCTCTGATCCAAAACGCAGCTCGGAGAAGAACCCAAATCCGTCGTCTTCTTCCTCGAGCATTCGATTTGCGATTCAGAATCAAAGCCCTGAAGAAACGGATGCTCAAGAAGCTCTTTCGCCGTCCATCGTTCTTTGGGGTCTTTTATCAAACAGTTGGCGACAAAATCCTTTGCCCTCTCCGAAAACCACACCGGAACCTCCGGCGACTCGCCGGAAAACCCAATTTTATACAGAGCCGCCACCGGATCATCCATCTCCGGCCACGGACGGTCGCCGG

Protein sequence

MEFPNPPLNPRSSDPKRSSEKNPNPSSSSSSIRFAIQNQSPEETDAQEALSPSIVLWGLLSNSWRQNPLPSPKTTPEPPATRRKTQFYTEPPPDHPSPATDGRR

Homology

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BLAST of MS008122 vs. ExPASy TrEMBL
Match: A0A0A0K3T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G212670 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.1e-16
Identity = 61/101 (60.40%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 1   MEFPNPPLNPRSSDPKRSSEKNPNPSSSSSSIRFAIQNQSPEETDAQEALSPSIVLWGLL 60
           ME PN PLNP++SDPK SSEK  +P  SSS+++F IQNQ  EETDA+EA+S SI L  LL
Sbjct: 1   MESPNLPLNPKTSDPKHSSEKKNSP-FSSSTLQFPIQNQVLEETDAREAVSHSIFLSSLL 60

Query: 61  SNSWRQNPLPSPKTTPEPPATRRKTQFYTEPPPDHPSPATD 102
           SN+WRQNP   P TT E   TRRK Q  T P PD   PA D
Sbjct: 61  SNTWRQNPSQFPTTTAESLVTRRKIQSDTTPKPDPLFPAMD 100

The following BLAST results are available for this feature:

BLAST of MS008122 vs.


Match Name	E-value	Identity	Description

BLAST of MS008122 vs.


Match Name	E-value	Identity	Description

BLAST of MS008122 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3T9	3.1e-16	60.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G212670 PE=4 SV=1	[more]

BLAST of MS008122 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008122.1	MS008122.1	mRNA