MS008024 (gene) Bitter gourd (TR) v1

Overview
NameMS008024
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold284: 219915 .. 220105 (+)
RNA-Seq ExpressionMS008024
SyntenyMS008024
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATCCCTAAATTTGCCGGGACTATTCTAGTGAGTCCTCCTATGGTGAACAAAAAGATGGACCCTACAGTAAATAACATGGGTGTTTTGTATTGTATCGAACCCCCCCACATGGTAGCGATCCAACTAAAGATTTTGATTCCAGTGGGGACTGCTATGATTATGGTAGAAGCAGTGAAGTAGGCACG

mRNA sequence

ATGTCTATCCCTAAATTTGCCGGGACTATTCTAGTGAGTCCTCCTATGGTGAACAAAAAGATGGACCCTACAGTAAATAACATGGGTGTTTTGTATTGTATCGAACCCCCCCACATGGTAGCGATCCAAGATTTTGATTCCAGTGGGGACTGCTATGATTATGGTAGAAGCAGTGAAGTAGGCACG

Coding sequence (CDS)

ATGTCTATCCCTAAATTTGCCGGGACTATTCTAGTGAGTCCTCCTATGGTGAACAAAAAGATGGACCCTACAGTAAATAACATGGGTGTTTTGTATTGTATCGAACCCCCCCACATGGTAGCGATCCAAGATTTTGATTCCAGTGGGGACTGCTATGATTATGGTAGAAGCAGTGAAGTAGGCACG

Protein sequence

MSIPKFAGTILVSPPMVNKKMDPTVNNMGVLYCIEPPHMVAIQDFDSSGDCYDYGRSSEVGT
Homology
BLAST of MS008024 vs. NCBI nr
Match: KAF3635473.1 (ATP synthase subunit alpha, chloroplastic [Capsicum annuum])

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 46/64 (71.88%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 1  MSIPKFAGTILVSPPMVNKKMDPTVNNMGVLYCIEP-PH-MVAIQDFDSSGDCYDYGRSS 60
          MS P+FA TI VSPPMVNKKM+PT NNMGVLYCIEP PH     +DFDSSGD YD+G   
Sbjct: 1  MSSPEFARTIPVSPPMVNKKMNPTTNNMGVLYCIEPLPHGSDPTKDFDSSGDNYDHGSCG 60

Query: 61 EVGT 63
          EVGT
Sbjct: 61 EVGT 64

BLAST of MS008024 vs. NCBI nr
Match: KAF5767741.1 (hypothetical protein HanXRQr2_Chr14g0628261 [Helianthus annuus])

HSP 1 Score: 84.7 bits (208), Expect = 3.0e-13
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0

Query: 1  MSIPKFAGTILVSPPMVNKKMDPTVNNMGVLYCIEPPHMVAIQ 44
          MS P+FAGTI VSPPMVNKKMDPT NNMGVLYCIEPPHMVAIQ
Sbjct: 1  MSSPEFAGTIPVSPPMVNKKMDPTANNMGVLYCIEPPHMVAIQ 43

BLAST of MS008024 vs. NCBI nr
Match: KAF1856899.1 (hypothetical protein Lal_00001930 [Lupinus albus])

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 0

Query: 1  MSIPKFAGTILVSPPMVNKKMDPTVNNMGVLYCIEPPHMVAIQ 44
          MS P+FAGTI VSPPMVNKKM+PT NNMGVLYCIEPPHMVAIQ
Sbjct: 1  MSSPEFAGTIPVSPPMVNKKMNPTANNMGVLYCIEPPHMVAIQ 43

BLAST of MS008024 vs. NCBI nr
Match: GFC35842.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 81.6 bits (200), Expect = 2.5e-12
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  MSIPKFAGTILVSPPMVNKKMDPTVNNMGVLYCIEPP---HMVAIQDFDSSGDCYDYGRS 60
          MS P+FA TI VSPPMVNK MDPT NNMGVLYCI+PP        +DFDSSGD YD+G  
Sbjct: 1  MSSPEFAETIPVSPPMVNKNMDPTANNMGVLYCIKPPTPHGSDPTKDFDSSGDSYDHGSC 60

BLAST of MS008024 vs. NCBI nr
Match: EXB58280.1 (hypothetical protein L484_015614 [Morus notabilis])

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-04
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 4  PKFAGTILVSPPMVNKKMDPTVNNMGVLYCIEPPH 39
          P+F  TI VS  MVNKKM+P  NNMGVLYC EPPH
Sbjct: 5  PEFVRTIPVSLAMVNKKMNPIANNMGVLYCNEPPH 39

BLAST of MS008024 vs. ExPASy TrEMBL
Match: A0A6A5L812 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001930 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.5e-13
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 0

Query: 1  MSIPKFAGTILVSPPMVNKKMDPTVNNMGVLYCIEPPHMVAIQ 44
          MS P+FAGTI VSPPMVNKKM+PT NNMGVLYCIEPPHMVAIQ
Sbjct: 1  MSSPEFAGTIPVSPPMVNKKMNPTANNMGVLYCIEPPHMVAIQ 43

BLAST of MS008024 vs. ExPASy TrEMBL
Match: M8AUQ9 (Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_31525 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 1  MSIPKFAGTILVSPPMVNKKMDPTVNNMGVLYCIEPPHMVAIQ 44
          MS P+FA TI VSPPMVNKKM+PT NNMGVLYCIEPPHMVAIQ
Sbjct: 1  MSSPEFARTIPVSPPMVNKKMNPTANNMGVLYCIEPPHMVAIQ 43

BLAST of MS008024 vs. ExPASy TrEMBL
Match: J3M0A0 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 16 MVNKKMDPTVNNMGVLYCIEPPHMVAIQ 44
          MVNKKM+PT NNMGVLYCIEPPHMVAIQ
Sbjct: 1  MVNKKMNPTANNMGVLYCIEPPHMVAIQ 28

BLAST of MS008024 vs. ExPASy TrEMBL
Match: W9QY14 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015614 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 4  PKFAGTILVSPPMVNKKMDPTVNNMGVLYCIEPPH 39
          P+F  TI VS  MVNKKM+P  NNMGVLYC EPPH
Sbjct: 5  PEFVRTIPVSLAMVNKKMNPIANNMGVLYCNEPPH 39

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF3635473.12.1e-1471.88ATP synthase subunit alpha, chloroplastic [Capsicum annuum][more]
KAF5767741.13.0e-1390.70hypothetical protein HanXRQr2_Chr14g0628261 [Helianthus annuus][more]
KAF1856899.11.1e-1288.37hypothetical protein Lal_00001930 [Lupinus albus][more]
GFC35842.12.5e-1266.13hypothetical protein [Tanacetum cinerariifolium][more]
EXB58280.13.3e-0471.43hypothetical protein L484_015614 [Morus notabilis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6A5L8125.5e-1388.37Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001930 PE=4 SV=1[more]
M8AUQ94.7e-1286.05Uncharacterized protein OS=Aegilops tauschii OX=37682 GN=F775_31525 PE=4 SV=1[more]
J3M0A02.9e-0692.86Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1[more]
W9QY141.6e-0471.43Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015614 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS008024.1MS008024.1mRNA