MS008019 (gene) Bitter gourd (TR) v1

Overview
NameMS008019
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionabscisic acid 8'-hydroxylase 1
Locationscaffold284: 179529 .. 179636 (+)
RNA-Seq ExpressionMS008019
SyntenyMS008019
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGACGACTTCTGGCTGTCCTCCTAGAAGTAGAGGAGTACCTCTAATCGGAGAGCAGCTCCAGTTCATGGCCGTCATTAATAGCAGCAATGGTGTTTATGATTTCGTG

mRNA sequence

GTGACGACTTCTGGCTGTCCTCCTAGAAGTAGAGGAGTACCTCTAATCGGAGAGCAGCTCCAGTTCATGGCCGTCATTAATAGCAGCAATGGTGTTTATGATTTCGTG

Coding sequence (CDS)

GTGACGACTTCTGGCTGTCCTCCTAGAAGTAGAGGAGTACCTCTAATCGGAGAGCAGCTCCAGTTCATGGCCGTCATTAATAGCAGCAATGGTGTTTATGATTTCGTG

Protein sequence

VTTSGCPPRSRGVPLIGEQLQFMAVINSSNGVYDFV
Homology
[Close]
BLAST of MS008019 vs. NCBI nr
Match: KAF7140748.1 (hypothetical protein RHSIM_Rhsim06G0030000 [Rhododendron simsii])

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-05
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 2  TTSGCPPRSRGVPLIGEQLQFMAVINSSNGVYDFV 37
          +T+G PP  RG+PLIGE LQFMA +NSSNG YDFV
Sbjct: 41 STAGIPPGYRGLPLIGETLQFMAAVNSSNGFYDFV 75

[Close]
BLAST of MS008019 vs. NCBI nr
Match: XP_023002298.1 (abscisic acid 8'-hydroxylase 1 isoform X3 [Cucurbita maxima] >XP_023002299.1 abscisic acid 8'-hydroxylase 1 isoform X3 [Cucurbita maxima] >XP_023002300.1 abscisic acid 8'-hydroxylase 1 isoform X3 [Cucurbita maxima] >XP_023002301.1 abscisic acid 8'-hydroxylase 1 isoform X3 [Cucurbita maxima] >XP_023002302.1 abscisic acid 8'-hydroxylase 1 isoform X3 [Cucurbita maxima])

HSP 1 Score: 55.8 bits (133), Expect = 8.7e-05
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 7  PPRSRGVPLIGEQLQFMAVINSSNGVYDFV 37
          PP SRG+PLIGE +QFMA +NSSNGVYDFV
Sbjct: 30 PPGSRGLPLIGETIQFMAAVNSSNGVYDFV 59

[Close]
BLAST of MS008019 vs. NCBI nr
Match: XP_023002297.1 (abscisic acid 8'-hydroxylase 4 isoform X2 [Cucurbita maxima])

HSP 1 Score: 55.8 bits (133), Expect = 8.7e-05
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 7  PPRSRGVPLIGEQLQFMAVINSSNGVYDFV 37
          PP SRG+PLIGE +QFMA +NSSNGVYDFV
Sbjct: 45 PPGSRGLPLIGETIQFMAAVNSSNGVYDFV 74

[Close]
BLAST of MS008019 vs. NCBI nr
Match: KAG6585579.1 (Abscisic acid 8'-hydroxylase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 8.7e-05
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 7   PPRSRGVPLIGEQLQFMAVINSSNGVYDFV 37
           PP SRG+PLIGE +QFMA +NSSNGVYDFV
Sbjct: 107 PPGSRGLPLIGETIQFMAAVNSSNGVYDFV 136

[Close]
BLAST of MS008019 vs. NCBI nr
Match: XP_023537704.1 (cytochrome P450 90A1 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.8 bits (133), Expect = 8.7e-05
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 7  PPRSRGVPLIGEQLQFMAVINSSNGVYDFV 37
          PP SRG+PLIGE +QFMA +NSSNGVYDFV
Sbjct: 31 PPGSRGLPLIGETIQFMAAVNSSNGVYDFV 60

[Close]
BLAST of MS008019 vs. ExPASy TrEMBL
Match: A0A6J1KNK0 (abscisic acid 8'-hydroxylase 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111496178 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-05
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 7  PPRSRGVPLIGEQLQFMAVINSSNGVYDFV 37
          PP SRG+PLIGE +QFMA +NSSNGVYDFV
Sbjct: 30 PPGSRGLPLIGETIQFMAAVNSSNGVYDFV 59

[Close]
BLAST of MS008019 vs. ExPASy TrEMBL
Match: A0A6J1KKX6 (abscisic acid 8'-hydroxylase 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496178 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-05
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 7   PPRSRGVPLIGEQLQFMAVINSSNGVYDFV 37
           PP SRG+PLIGE +QFMA +NSSNGVYDFV
Sbjct: 103 PPGSRGLPLIGETIQFMAAVNSSNGVYDFV 132

[Close]
BLAST of MS008019 vs. ExPASy TrEMBL
Match: A0A6J1KJ46 (abscisic acid 8'-hydroxylase 4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496178 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-05
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 7  PPRSRGVPLIGEQLQFMAVINSSNGVYDFV 37
          PP SRG+PLIGE +QFMA +NSSNGVYDFV
Sbjct: 45 PPGSRGLPLIGETIQFMAAVNSSNGVYDFV 74

[Close]
BLAST of MS008019 vs. ExPASy TrEMBL
Match: A0A6J1GIG3 (abscisic acid 8'-hydroxylase 1 OS=Cucurbita moschata OX=3662 GN=LOC111454446 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-05
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 7  PPRSRGVPLIGEQLQFMAVINSSNGVYDFV 37
          PP SRG+PLIGE +QFMA +NSSNGVYDFV
Sbjct: 45 PPGSRGLPLIGETIQFMAAVNSSNGVYDFV 74

[Close]
BLAST of MS008019 vs. ExPASy TrEMBL
Match: A0A5A7VFW3 (Abscisic acid 8'-hydroxylase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005540 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.2e-05
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  VTTSGCPPRSRGVPLIGEQLQFMAVINSSNGVYDFV 37
          ++ +G PP SRG+P IGE LQFMA +N S+GVYDFV
Sbjct: 39 ISPAGTPPGSRGLPFIGETLQFMAAVNCSSGVYDFV 74

[Close]
BLAST of MS008019 vs. TAIR 10
Match: AT1G19630.1 (cytochrome P450, family 722, subfamily A, polypeptide 1 )

HSP 1 Score: 47.0 bits (110), Expect = 3.8e-06
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 0 

Query: 2  TTSGCPPRSRGVPLIGEQLQFMAVINSSNGVYDFV 37
          +T+G PP S G P+IGE LQFM  +NS  G Y+FV
Sbjct: 31 STAGVPPGSDGFPVIGETLQFMLSVNSGKGFYEFV 65

The following BLAST results are available for this feature:
BLAST of MS008019 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7140748.13.0e-0571.43hypothetical protein RHSIM_Rhsim06G0030000 [Rhododendron simsii][more]
XP_023002298.18.7e-0580.00abscisic acid 8'-hydroxylase 1 isoform X3 [Cucurbita maxima] >XP_023002299.1 abs... [more]
XP_023002297.18.7e-0580.00abscisic acid 8'-hydroxylase 4 isoform X2 [Cucurbita maxima][more]
KAG6585579.18.7e-0580.00Abscisic acid 8'-hydroxylase 1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023537704.18.7e-0580.00cytochrome P450 90A1 isoform X3 [Cucurbita pepo subsp. pepo][more]
BLAST of MS008019 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS008019 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KNK04.2e-0580.00abscisic acid 8'-hydroxylase 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1KKX64.2e-0580.00abscisic acid 8'-hydroxylase 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1KJ464.2e-0580.00abscisic acid 8'-hydroxylase 4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1GIG34.2e-0580.00abscisic acid 8'-hydroxylase 1 OS=Cucurbita moschata OX=3662 GN=LOC111454446 PE=... [more]
A0A5A7VFW37.2e-0563.89Abscisic acid 8'-hydroxylase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
BLAST of MS008019 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G19630.13.8e-0657.14cytochrome P450, family 722, subfamily A, polypeptide 1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS008019.1MS008019.1mRNA