MS007858 (gene) Bitter gourd (TR) v1

Overview


Name	MS007858
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Prefoldin chaperone subunit family protein
Location	scaffold13: 1864275 .. 1865849 (+)
RNA-Seq Expression	MS007858
Synteny	MS007858

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGCGGTGGTGGTTTTGTCACGGTGGCGGCGACGGCGTCGCCTTCGAGAACGATTGAAGAGCAGAAACTGGAAATCGCAAAAGCGATGAGAAGTCATGAGGTCGCCATTGCAGAGCTCAATCATCTTTCCTCTTTCAGAGTAAGCCCTACCGTGCTCTTTCTCAATTTCCTTTCGCTCTTTTGTCAAATTCAAACTCGAAGTAGAATGATGCAATAGAAATTGGACTGTTCGAATTGCGCGAAATCTGCTCGCTTATCACTCGCCATGATTAACATTTCGGAGGAAGCTTTCTATCGTATTCACTAATATCTAGGGTGCAGTGGAATCCAAATATTCGAGTAATTGGTGAATTCTTTCATGCTGAACTGAAGTCGACTTCTTTTGAATTCAATTTTAGGTATTTTTGAAACACACGATGGAGTTATGGTCTATTTTATACATGAAAACTGCTTGATTTATTTACTGTTTTACTGTTTAGAAGAATGTTAGTATAGTAGTAACATTTTTTATCCTTTGACAGCTCTATTTGTCCTGAGCCCCAATGAAGAATTAAAATGTCTCAACTGAGGACAATGATGTGAACTGATATTCTTACAGAAATCATGTGGAAAGAGAGCTATTAAACTTTCAAGTTGTCCTTATTAGTCTTTGAAGATCTCAATTTTTTGTCTAGTAGGTTGATAAACTTTTAAAATTGTATAACAGCCTCTCGGATTTTAATTTTGTGTTCAATAATTTCTTAATTTATTAGACATTTTTTCAAATTTATGTACAATACAAAATTGAAAGTTTAGTGACCTATTTTTCTTTTTTGGATAATCAGGAGTTAGAGCTTTACTCCCCGTACCTAGGGGTACCCATGCCCACTTCAAAGCTTGAATTCCATGAAATATGAAAGGTTTTTTAATTTTTTTTTTTTGTGTATTAAAATCACCCATAGTTTGAACTTGAAACCTCTAAATCAACCGCCACTTAAGGACAAGTTTCGTGACCTATTTCAAATCTATTCCATCCAAAATGATATTGAATAGAATTTCTCTCCAAAATCATTGGAGGAAAGCAAGTATTTGAGCGAGAACACTCTGCCCTGCCCATATTATGAACAATGATTAAGTTGTCAGTAGATGAGTTCAACTCAACAAGTTCATTCCTTATAAATAACAGTTCTTTATTCATAAGTCTTGACTCGGGGAGGGTGATTGCAGCATTCAGCAATCTAGTCAAAGAAATGCGTCCGATAGACACAAAACTAGAAGTCGTGACCTATTAGACACCACCTCCAAAATTTAGGGACTAAATTTGCAATTTAACCTAGTTTTATATATGGATGGATTCTGAAAGTTGATATGAAATCTTTCTATATATGAAGTTATTACTGGAAATGTTGATATGTGGATGAGTAAACTTATAACCAAATGGTTTAAGATGAACAGCCACTGCCTCTCTCCTAGTAACCTTACTAATACAGATTCTTAATCTTGTTATAATTTGCAGGCTGTCTTTCAGAAAAATGGAAACTTATTTTTTCGCACAACTGTTCAAAAGGCAACAACTTCCGAACAGAGTAAG

mRNA sequence

ATGGCTGGCGGTGGTGGTTTTGTCACGGTGGCGGCGACGGCGTCGCCTTCGAGAACGATTGAAGAGCAGAAACTGGAAATCGCAAAAGCGATGAGAAGTCATGAGGTCGCCATTGCAGAGCTCAATCATCTTTCCTCTTTCAGAGCTGTCTTTCAGAAAAATGGAAACTTATTTTTTCGCACAACTGTTCAAAAGGCAACAACTTCCGAACAGAGTAAG

Coding sequence (CDS)

ATGGCTGGCGGTGGTGGTTTTGTCACGGTGGCGGCGACGGCGTCGCCTTCGAGAACGATTGAAGAGCAGAAACTGGAAATCGCAAAAGCGATGAGAAGTCATGAGGTCGCCATTGCAGAGCTCAATCATCTTTCCTCTTTCAGAGCTGTCTTTCAGAAAAATGGAAACTTATTTTTTCGCACAACTGTTCAAAAGGCAACAACTTCCGAACAGAGTAAG

Protein sequence

MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFRTTVQKATTSEQSK

Homology

[Close]

BLAST of MS007858 vs. NCBI nr
Match: XP_022155705.1 (uncharacterized protein LOC111022769 [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-28
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60
          MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR
Sbjct: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60

Query: 61 TTVQKATTSEQSK 74
          TTVQKATTSEQ K
Sbjct: 61 TTVQKATTSEQKK 73

[Close]

BLAST of MS007858 vs. NCBI nr
Match: KAG6593773.1 (hypothetical protein SDJN03_13249, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 61/73 (83.56%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60
          MA GGGF T  A A PSRTIEEQKLEI K MRSHEV+IAELNHLSS RAVFQKNGN+FFR
Sbjct: 1  MATGGGFGT--AAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFR 60

Query: 61 TTVQKATTSEQSK 74
          TTVQKATTSEQ K
Sbjct: 61 TTVQKATTSEQKK 71

[Close]

BLAST of MS007858 vs. NCBI nr
Match: XP_023000435.1 (uncharacterized protein LOC111494702 [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60
          MA GGGF T  A+  PSRTIEEQKLEI K MRSHEV+IAELNHLSS RAVFQKNGN+FFR
Sbjct: 1  MATGGGFGT--ASVFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFR 60

Query: 61 TTVQKATTSEQSK 74
          TTVQKATTSEQ K
Sbjct: 61 TTVQKATTSEQKK 71

[Close]

BLAST of MS007858 vs. NCBI nr
Match: XP_023514719.1 (uncharacterized protein LOC111778937 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.5 bits (267), Expect = 5.1e-20
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60
          MA GGGF T  A   PSRTIEEQKLEI K MRSHEV+IAELNHLSS RAVFQKNGN+FFR
Sbjct: 1  MATGGGFGT--AAEFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFR 60

Query: 61 TTVQKATTSEQSK 74
          TTVQKATTSEQ K
Sbjct: 61 TTVQKATTSEQKK 71

[Close]

BLAST of MS007858 vs. NCBI nr
Match: XP_022964526.1 (uncharacterized protein LOC111464527 [Cucurbita moschata])

HSP 1 Score: 107.5 bits (267), Expect = 5.1e-20
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60
          M  GGGF T  A A PSRTIEEQKLEI K MRSHEV+IAELNHLSS RAVFQKNGN+FFR
Sbjct: 24 MPTGGGFGT--AAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFR 83

Query: 61 TTVQKATTSEQSK 74
          TTVQKATTSEQ K
Sbjct: 84 TTVQKATTSEQKK 94

[Close]

BLAST of MS007858 vs. ExPASy TrEMBL
Match: A0A6J1DN63 (uncharacterized protein LOC111022769 OS=Momordica charantia OX=3673 GN=LOC111022769 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.5e-29
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60
          MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR
Sbjct: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60

Query: 61 TTVQKATTSEQSK 74
          TTVQKATTSEQ K
Sbjct: 61 TTVQKATTSEQKK 73

[Close]

BLAST of MS007858 vs. ExPASy TrEMBL
Match: A0A6J1KIB7 (uncharacterized protein LOC111494702 OS=Cucurbita maxima OX=3661 GN=LOC111494702 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60
          MA GGGF T  A+  PSRTIEEQKLEI K MRSHEV+IAELNHLSS RAVFQKNGN+FFR
Sbjct: 1  MATGGGFGT--ASVFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFR 60

Query: 61 TTVQKATTSEQSK 74
          TTVQKATTSEQ K
Sbjct: 61 TTVQKATTSEQKK 71

[Close]

BLAST of MS007858 vs. ExPASy TrEMBL
Match: A0A6J1HJ49 (uncharacterized protein LOC111464527 OS=Cucurbita moschata OX=3662 GN=LOC111464527 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.5e-20
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60
          M  GGGF T  A A PSRTIEEQKLEI K MRSHEV+IAELNHLSS RAVFQKNGN+FFR
Sbjct: 24 MPTGGGFGT--AAAFPSRTIEEQKLEITKEMRSHEVSIAELNHLSSTRAVFQKNGNIFFR 83

Query: 61 TTVQKATTSEQSK 74
          TTVQKATTSEQ K
Sbjct: 84 TTVQKATTSEQKK 94

[Close]

BLAST of MS007858 vs. ExPASy TrEMBL
Match: A0A0A0LK18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G118320 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.1e-18
Identity = 58/73 (79.45%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60
          MA  GG  T    ASPS T+EEQKLEI K MRS EVAIAELNHLSS RAVFQKNGNLFFR
Sbjct: 1  MAADGGLST---AASPSITMEEQKLEITKQMRSLEVAIAELNHLSSTRAVFQKNGNLFFR 60

Query: 61 TTVQKATTSEQSK 74
          TTVQKATTSEQ K
Sbjct: 61 TTVQKATTSEQKK 70

[Close]

BLAST of MS007858 vs. ExPASy TrEMBL
Match: A0A1S3C672 (uncharacterized protein LOC103496917 OS=Cucumis melo OX=3656 GN=LOC103496917 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.3e-17
Identity = 57/73 (78.08%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1  MAGGGGFVTVAATASPSRTIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFR 60
          MA  GGF T    A PS T EEQKLEI K MRS EVAIAELNHLSS RAV+QKNGNLFFR
Sbjct: 1  MAADGGFST---AAFPSITKEEQKLEITKQMRSLEVAIAELNHLSSTRAVYQKNGNLFFR 60

Query: 61 TTVQKATTSEQSK 74
          TTVQKATTSEQ K
Sbjct: 61 TTVQKATTSEQKK 70

[Close]

BLAST of MS007858 vs. TAIR 10
Match: AT1G49245.1 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 50.1 bits (118), Expect = 9.0e-07
Identity = 24/55 (43.64%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 19 TIEEQKLEIAKAMRSHEVAIAELNHLSSFRAVFQKNGNLFFRTTVQKATTSEQSK 74
          T  +++ E+ K ++  EV++ EL+ LSS R+++QKNGNLFF T+ +KA  S Q +
Sbjct: 5  TSSDREFELEKEIKRQEVSLDELSSLSSSRSIYQKNGNLFFLTSAEKAKISAQKQ 59

The following BLAST results are available for this feature:

BLAST of MS007858 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155705.1	1.7e-28	98.63	uncharacterized protein LOC111022769 [Momordica charantia]	[more]
KAG6593773.1	1.3e-20	83.56	hypothetical protein SDJN03_13249, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023000435.1	3.0e-20	82.19	uncharacterized protein LOC111494702 [Cucurbita maxima]	[more]
XP_023514719.1	5.1e-20	82.19	uncharacterized protein LOC111778937 [Cucurbita pepo subsp. pepo]	[more]
XP_022964526.1	5.1e-20	82.19	uncharacterized protein LOC111464527 [Cucurbita moschata]	[more]

BLAST of MS007858 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS007858 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN63	8.5e-29	98.63	uncharacterized protein LOC111022769 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1KIB7	1.4e-20	82.19	uncharacterized protein LOC111494702 OS=Cucurbita maxima OX=3661 GN=LOC111494702...	[more]
A0A6J1HJ49	2.5e-20	82.19	uncharacterized protein LOC111464527 OS=Cucurbita moschata OX=3662 GN=LOC1114645...	[more]
A0A0A0LK18	5.1e-18	79.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G118320 PE=3 SV=1	[more]
A0A1S3C672	3.3e-17	78.08	uncharacterized protein LOC103496917 OS=Cucumis melo OX=3656 GN=LOC103496917 PE=...	[more]

BLAST of MS007858 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49245.1	9.0e-07	43.64	Prefoldin chaperone subunit family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 18..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007858.1	MS007858.1	mRNA