MS007833 (gene) Bitter gourd (TR) v1

Overview
NameMS007833
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein TIC 214
Locationscaffold13: 1624766 .. 1624896 (+)
RNA-Seq ExpressionMS007833
SyntenyMS007833
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGTAGGAAAATCACGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGT

mRNA sequence

CGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGAGGAAAATCACGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGT

Coding sequence (CDS)

CGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGAGGAAAATCACGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGT

Protein sequence

RTTVSGVRIPPRPQPAKKGRTFPSGRKITIGIADPKLWNLGVG
Homology
[Close]
BLAST of MS007833 vs. NCBI nr
Match: THG14067.1 (hypothetical protein TEA_017317 [Camellia sinensis var. sinensis])

HSP 1 Score: 71.2 bits (173), Expect = 2.4e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 1  RTTVSGVRIPPRPQPAKKGRTFPS-GRKITIGIADPKLWNLG 42
          RTTVSGVRIPPRPQPA+KGRTFPS G+KI IGIAD KL NLG
Sbjct: 41 RTTVSGVRIPPRPQPAQKGRTFPSGGKKIMIGIADAKLLNLG 82

[Close]
BLAST of MS007833 vs. NCBI nr
Match: KAD4887875.1 (hypothetical protein E3N88_19946 [Mikania micrantha])

HSP 1 Score: 57.0 bits (136), Expect = 4.7e-05
Identity = 29/42 (69.05%), Postives = 30/42 (71.43%), Query Frame = 0 

Query: 1  RTTVSGVRIPPRPQPAKKGRTFPSGRKITIGIADPKLWNLGV 43
          RTTVSGVRIPPRPQPA+KGR FPSG         P LWN GV
Sbjct: 2  RTTVSGVRIPPRPQPAQKGRAFPSGA--------PGLWNKGV 35

[Close]
BLAST of MS007833 vs. ExPASy TrEMBL
Match: A0A4V3WNW4 (Protein TIC 214 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017317 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 1  RTTVSGVRIPPRPQPAKKGRTFPS-GRKITIGIADPKLWNLG 42
          RTTVSGVRIPPRPQPA+KGRTFPS G+KI IGIAD KL NLG
Sbjct: 41 RTTVSGVRIPPRPQPAQKGRTFPSGGKKIMIGIADAKLLNLG 82

[Close]
BLAST of MS007833 vs. ExPASy TrEMBL
Match: A0A5N6NI88 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_19946 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-05
Identity = 29/42 (69.05%), Postives = 30/42 (71.43%), Query Frame = 0 

Query: 1  RTTVSGVRIPPRPQPAKKGRTFPSGRKITIGIADPKLWNLGV 43
          RTTVSGVRIPPRPQPA+KGR FPSG         P LWN GV
Sbjct: 2  RTTVSGVRIPPRPQPAQKGRAFPSGA--------PGLWNKGV 35

The following BLAST results are available for this feature:
BLAST of MS007833 vs. NCBI nr
Match NameE-valueIdentityDescription
THG14067.12.4e-0985.71hypothetical protein TEA_017317 [Camellia sinensis var. sinensis][more]
KAD4887875.14.7e-0569.05hypothetical protein E3N88_19946 [Mikania micrantha][more]
BLAST of MS007833 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS007833 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4V3WNW41.2e-0985.71Protein TIC 214 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017317 PE=3 ... [more]
A0A5N6NI882.3e-0569.05Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_19946 PE=4 SV=1[more]
BLAST of MS007833 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS007833.1MS007833.1mRNA