MS007813 (gene) Bitter gourd (TR) v1

Overview


Name	MS007813
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	small EDRK-rich factor 2-like
Location	scaffold13: 1489011 .. 1489292 (-)
RNA-Seq Expression	MS007813
Synteny	MS007813

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCACGCGGAAACCAGAGGGAGAAGGACCGAGAGAGGGCCCAAGCTCGCAGCACCGCCAAGGGCAAGGGCAAGGATGATGGTTTGACCCCCGAGCAGCGCCGTGAGAGGTTTATTCGTCTCTCGTTTTGCTTCTTGTTTCTTTGGTTTTTGATTTGGTATATGATTGATTTTGTGTTCTTGGTTAGGGATGCGAAGGCGCTGCAAGAGAAGGCGGCGAAGAAGGCGGCTCAGGCGGCATCGGGAGGTGATTCGTCCGGAGGTAAAAGTAGCAATAAGAAA

mRNA sequence

TCTCCACGCGGAAACCAGAGGGAGAAGGACCGAGAGAGGGCCCAAGCTCGCAGCACCGCCAAGGGCAAGGGCAAGGATGATGGTTTGACCCCCGAGCAGCGCCGTGAGAGGTTTATTCGTCTCTCGTTTTGCTTCTTGTTTCTTTGGTTTTTGATTTGGTATATGATTGATTTTGTGTTCTTGGTTAGGGATGCGAAGGCGCTGCAAGAGAAGGCGGCGAAGAAGGCGGCTCAGGCGGCATCGGGAGGTGATTCGTCCGGAGGTAAAAGTAGCAATAAGAAA

Coding sequence (CDS)

TCTCCACGCGGAAACCAGAGGGAGAAGGACCGAGAGAGGGCCCAAGCTCGCAGCACCGCCAAGGGCAAGGGCAAGGATGATGGTTTGACCCCCGAGCAGCGCCGTGAGAGGTTTATTCGTCTCTCGTTTTGCTTCTTGTTTCTTTGGTTTTTGATTTGGTATATGATTGATTTTGTGTTCTTGGTTAGGGATGCGAAGGCGCTGCAAGAGAAGGCGGCGAAGAAGGCGGCTCAGGCGGCATCGGGAGGTGATTCGTCCGGAGGTAAAAGTAGCAATAAGAAA

Protein sequence

SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK

Homology

[Close]

BLAST of MS007813 vs. NCBI nr
Match: XP_022138397.1 (small EDRK-rich factor 2-like [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 65/92 (70.65%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 3  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLV 62
          RGNQREKDRERAQAR+TAKGKGKDDGLTPEQRRE                          
Sbjct: 3  RGNQREKDRERAQARNTAKGKGKDDGLTPEQRRE-------------------------- 62

Query: 63 RDAKALQEKAAKKAAQAASGGDSSGGKSSNKK 95
          RDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
Sbjct: 63 RDAKALQEKAAKKAAQAASGGDSSGGKSSNKK 68

[Close]

BLAST of MS007813 vs. NCBI nr
Match: XP_038876165.1 (small EDRK-rich factor 2 [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-15
Identity = 59/92 (64.13%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 3  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLV 62
          RGNQREKDRER+QAR++ KGK KDDGLTPEQRRE                          
Sbjct: 3  RGNQREKDRERSQARNSGKGKTKDDGLTPEQRRE-------------------------- 62

Query: 63 RDAKALQEKAAKKAAQAASGGDSSGGKSSNKK 95
          RDAKALQEKAAKKAAQAASGG+SSGGKSS KK
Sbjct: 63 RDAKALQEKAAKKAAQAASGGNSSGGKSSTKK 68

[Close]

BLAST of MS007813 vs. NCBI nr
Match: KAA0033303.1 (small EDRK-rich factor 2 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-15
Identity = 60/94 (63.83%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 1  SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVF 60
          S RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                        
Sbjct: 15 SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRE------------------------ 74

Query: 61 LVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK 95
            RDAKALQEKAAKKAAQAASGG+SSGGK+S KK
Sbjct: 75 --RDAKALQEKAAKKAAQAASGGNSSGGKASTKK 82

[Close]

BLAST of MS007813 vs. NCBI nr
Match: TYK21602.1 (small EDRK-rich factor 2 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 6.4e-15
Identity = 60/94 (63.83%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 1  SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVF 60
          S RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                        
Sbjct: 17 SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRE------------------------ 76

Query: 61 LVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK 95
            RDAKALQEKAAKKAAQAASGG+SSGGK+S KK
Sbjct: 77 --RDAKALQEKAAKKAAQAASGGNSSGGKASTKK 84

[Close]

BLAST of MS007813 vs. NCBI nr
Match: XP_008457241.1 (PREDICTED: small EDRK-rich factor 2 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 8.3e-15
Identity = 59/92 (64.13%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 3  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLV 62
          RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                          
Sbjct: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRE-------------------------- 62

Query: 63 RDAKALQEKAAKKAAQAASGGDSSGGKSSNKK 95
          RDAKALQEKAAKKAAQAASGG+SSGGK+S KK
Sbjct: 63 RDAKALQEKAAKKAAQAASGGNSSGGKASTKK 68

[Close]

BLAST of MS007813 vs. ExPASy TrEMBL
Match: A0A6J1CB00 (small EDRK-rich factor 2-like OS=Momordica charantia OX=3673 GN=LOC111009581 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.0e-19
Identity = 65/92 (70.65%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 3  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLV 62
          RGNQREKDRERAQAR+TAKGKGKDDGLTPEQRRE                          
Sbjct: 3  RGNQREKDRERAQARNTAKGKGKDDGLTPEQRRE-------------------------- 62

Query: 63 RDAKALQEKAAKKAAQAASGGDSSGGKSSNKK 95
          RDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
Sbjct: 63 RDAKALQEKAAKKAAQAASGGDSSGGKSSNKK 68

[Close]

BLAST of MS007813 vs. ExPASy TrEMBL
Match: A0A5A7SS85 (Small EDRK-rich factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001140 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.1e-15
Identity = 60/94 (63.83%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 1  SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVF 60
          S RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                        
Sbjct: 15 SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRE------------------------ 74

Query: 61 LVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK 95
            RDAKALQEKAAKKAAQAASGG+SSGGK+S KK
Sbjct: 75 --RDAKALQEKAAKKAAQAASGGNSSGGKASTKK 82

[Close]

BLAST of MS007813 vs. ExPASy TrEMBL
Match: A0A5D3DDD9 (Small EDRK-rich factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G001070 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.1e-15
Identity = 60/94 (63.83%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 1  SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVF 60
          S RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                        
Sbjct: 17 SLRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRE------------------------ 76

Query: 61 LVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK 95
            RDAKALQEKAAKKAAQAASGG+SSGGK+S KK
Sbjct: 77 --RDAKALQEKAAKKAAQAASGGNSSGGKASTKK 84

[Close]

BLAST of MS007813 vs. ExPASy TrEMBL
Match: A0A1S3C551 (small EDRK-rich factor 2 OS=Cucumis melo OX=3656 GN=LOC103496966 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.0e-15
Identity = 59/92 (64.13%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 3  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLV 62
          RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                          
Sbjct: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRE-------------------------- 62

Query: 63 RDAKALQEKAAKKAAQAASGGDSSGGKSSNKK 95
          RDAKALQEKAAKKAAQAASGG+SSGGK+S KK
Sbjct: 63 RDAKALQEKAAKKAAQAASGGNSSGGKASTKK 68

[Close]

BLAST of MS007813 vs. ExPASy TrEMBL
Match: A0A6J1KZW7 (small EDRK-rich factor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111499109 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.6e-14
Identity = 59/92 (64.13%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 3  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLV 62
          RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                          
Sbjct: 3  RGNQREKDRERAQARTGGKGKTKDDGLTPEQRRE-------------------------- 62

Query: 63 RDAKALQEKAAKKAAQAASGGDSSGGKSSNKK 95
          RDAKALQEKAAKKAAQAAS G+SSGGKSS KK
Sbjct: 63 RDAKALQEKAAKKAAQAASEGNSSGGKSSAKK 68

[Close]

BLAST of MS007813 vs. TAIR 10
Match: AT3G24100.1 (Uncharacterised protein family SERF )

HSP 1 Score: 70.5 bits (171), Expect = 8.3e-13
Identity = 50/93 (53.76%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 3  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLV 62
          RG+QRE+DRERA AR+  KGK KDDGLTPEQRRE                          
Sbjct: 3  RGSQRERDRERALARTGGKGKNKDDGLTPEQRRE-------------------------- 62

Query: 63 RDAKALQEKAAKKAAQAASGGDS--SGGKSSNK 94
          RDAKALQEK AKKAAQAA+   S   GGK +NK
Sbjct: 63 RDAKALQEKTAKKAAQAAAAASSGGGGGKGNNK 69

[Close]

BLAST of MS007813 vs. TAIR 10
Match: AT4G13615.1 (Uncharacterised protein family SERF )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 49/94 (52.13%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 3  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLV 62
          RG+QRE+DRERA AR+  KGK  DDGLTPEQRRE                          
Sbjct: 3  RGSQRERDRERAAARAGGKGKNGDDGLTPEQRRE-------------------------- 62

Query: 63 RDAKALQEKAAKKAAQA--ASGGDSSGGKSSNKK 95
          RD KALQEKAAKKAAQA  AS G ++GGK +  K
Sbjct: 63 RDGKALQEKAAKKAAQAAGASSGGAAGGKGAAAK 70

The following BLAST results are available for this feature:

BLAST of MS007813 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138397.1	1.2e-18	70.65	small EDRK-rich factor 2-like [Momordica charantia]	[more]
XP_038876165.1	3.7e-15	64.13	small EDRK-rich factor 2 [Benincasa hispida]	[more]
KAA0033303.1	6.4e-15	63.83	small EDRK-rich factor 2 [Cucumis melo var. makuwa]	[more]
TYK21602.1	6.4e-15	63.83	small EDRK-rich factor 2 [Cucumis melo var. makuwa]	[more]
XP_008457241.1	8.3e-15	64.13	PREDICTED: small EDRK-rich factor 2 [Cucumis melo]	[more]

BLAST of MS007813 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS007813 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CB00	6.0e-19	70.65	small EDRK-rich factor 2-like OS=Momordica charantia OX=3673 GN=LOC111009581 PE=...	[more]
A0A5A7SS85	3.1e-15	63.83	Small EDRK-rich factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3DDD9	3.1e-15	63.83	Small EDRK-rich factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3C551	4.0e-15	64.13	small EDRK-rich factor 2 OS=Cucumis melo OX=3656 GN=LOC103496966 PE=3 SV=1	[more]
A0A6J1KZW7	2.6e-14	64.13	small EDRK-rich factor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111499109 PE=3 S...	[more]

BLAST of MS007813 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24100.1	8.3e-13	53.76	Uncharacterised protein family SERF	[more]
AT4G13615.1	1.2e-11	52.13	Uncharacterised protein family SERF	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 3..35 e-value: 1.8E-8 score: 35.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
IPR040211	Small EDRK-rich factor 1/2	PANTHER	PTHR13596	SMALL EDRK-RICH FACTOR 1	coord: 3..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007813.1	MS007813.1	mRNA