MS007710 (gene) Bitter gourd (TR) v1

Overview
NameMS007710
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold13: 666645 .. 666905 (-)
RNA-Seq ExpressionMS007710
SyntenyMS007710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACATTCAAGTTTTCTTTGCAAAATAGGTTACATTTTAGTGCTTCTCACCACCTCCCAAGCTCTGAGGATTCCGACGGAGTCCAATCGAGAAGTGATTCCGGTCACCGACCAGAAGCTTCCCTCTGTCACTGCCACCACCACTGCTACCGACCCCGAGTCGGAGGACGAGAAGTTGAAGTACTACAAGAACAAACCTAGCTCTAAGCATCGGCCTCCCTACAAAAAACCACCTTACCCCTACAAGATACCGTCCTCCAAC

mRNA sequence

AAACATTCAAGTTTTCTTTGCAAAATAGGTTACATTTTAGTGCTTCTCACCACCTCCCAAGCTCTGAGGATTCCGACGGAGTCCAATCGAGAAGTGATTCCGGTCACCGACCAGAAGCTTCCCTCTGTCACTGCCACCACCACTGCTACCGACCCCGAGTCGGAGGACGAGAAGTTGAAGTACTACAAGAACAAACCTAGCTCTAAGCATCGGCCTCCCTACAAAAAACCACCTTACCCCTACAAGATACCGTCCTCCAAC

Coding sequence (CDS)

AAACATTCAAGTTTTCTTTGCAAAATAGGTTACATTTTAGTGCTTCTCACCACCTCCCAAGCTCTGAGGATTCCGACGGAGTCCAATCGAGAAGTGATTCCGGTCACCGACCAGAAGCTTCCCTCTGTCACTGCCACCACCACTGCTACCGACCCCGAGTCGGAGGACGAGAAGTTGAAGTACTACAAGAACAAACCTAGCTCTAAGCATCGGCCTCCCTACAAAAAACCACCTTACCCCTACAAGATACCGTCCTCCAAC

Protein sequence

KHSSFLCKIGYILVLLTTSQALRIPTESNREVIPVTDQKLPSVTATTTATDPESEDEKLKYYKNKPSSKHRPPYKKPPYPYKIPSSN
Homology
BLAST of MS007710 vs. NCBI nr
Match: XP_023513909.1 (repetitive proline-rich cell wall protein 3-like [Cucurbita pepo subsp. pepo] >KAG6593838.1 hypothetical protein SDJN03_13314, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026170.1 hypothetical protein SDJN02_12669, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 13 LVLLTTSQALRIPTESNREVIPVTDQKLPSVTATTTATDPESEDEKLKYYKNKPSSKH-- 72
          +VLLTT+QAL+ P++S  EVIPV++QKLPS TAT   T+P SE E+ K+Y+ +P  K+  
Sbjct: 13 VVLLTTTQALKHPSDSAHEVIPVSNQKLPSTTATD--TEPASEHEESKFYRKRPYKKYPP 72

Query: 73 ---RPPYKK-PPYPYKIPSSN 88
              PPYKK PPY    PSSN
Sbjct: 73 YKRYPPYKKRPPYKKYPPSSN 91

BLAST of MS007710 vs. NCBI nr
Match: WP_219729224.1 (hypothetical protein, partial [Pectobacterium odoriferum])

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 13 LVLLTTSQALRIPTESNREVIPVTDQKLPSVTATTTATDPESEDEKLKYYK----NKPSS 72
          +VLLTT+QAL+ P++SN+EVIP+TD++LP+ T T T  D ES+  K  YYK     +P  
Sbjct: 19 VVLLTTTQALKHPSDSNQEVIPLTDERLPTTTTTNTDPDEESKFYKKPYYKRPYYKRPPY 78

Query: 73 KHRPPYKK-PPYPYKIPSSN 88
          K  PPYKK PPY    PSS+
Sbjct: 79 KKYPPYKKHPPYKKYPPSSD 98

BLAST of MS007710 vs. NCBI nr
Match: POE15980.1 (hypothetical protein BV923_23575 [Pectobacterium odoriferum])

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 13 LVLLTTSQALRIPTESNREVIPVTDQKLPSVTATTTATDPESEDEKLKYYK----NKPSS 72
          +VLLTT+QAL+ P++SN+EVIP+TD++LP+ T T T  D ES+  K  YYK     +P  
Sbjct: 13 VVLLTTTQALKHPSDSNQEVIPLTDERLPTTTTTNTDPDEESKFYKKPYYKRPYYKRPPY 72

Query: 73 KHRPPYKK-PPYPYKIPSSN 88
          K  PPYKK PPY    PSS+
Sbjct: 73 KKYPPYKKHPPYKKYPPSSD 92

BLAST of MS007710 vs. NCBI nr
Match: XP_022930415.1 (uncharacterized protein LOC111436870 [Cucurbita moschata])

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 13 LVLLTTSQALRIPTESNREVIPVTDQKLPSVTATTTATDPESEDEKLKYYKNK-----PS 72
          +VLLTT+QAL+ P++S  EVIPV++QKLPS TAT   T+P SE E+ K+Y+ +     P 
Sbjct: 13 VVLLTTTQALKHPSDSAHEVIPVSNQKLPSTTATD--TEPASEHEESKFYRKRLYKKYPP 72

Query: 73 SKHRPPYKK-PPYPYKIPSSN 88
           K  PPYKK PPY    PSSN
Sbjct: 73 YKRYPPYKKRPPYKKYPPSSN 91

BLAST of MS007710 vs. ExPASy TrEMBL
Match: A0A6J1EWV3 (uncharacterized protein LOC111436870 OS=Cucurbita moschata OX=3662 GN=LOC111436870 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 13 LVLLTTSQALRIPTESNREVIPVTDQKLPSVTATTTATDPESEDEKLKYYKNK-----PS 72
          +VLLTT+QAL+ P++S  EVIPV++QKLPS TAT   T+P SE E+ K+Y+ +     P 
Sbjct: 13 VVLLTTTQALKHPSDSAHEVIPVSNQKLPSTTATD--TEPASEHEESKFYRKRLYKKYPP 72

Query: 73 SKHRPPYKK-PPYPYKIPSSN 88
           K  PPYKK PPY    PSSN
Sbjct: 73 YKRYPPYKKRPPYKKYPPSSN 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023513909.11.6e-0754.32repetitive proline-rich cell wall protein 3-like [Cucurbita pepo subsp. pepo] >K... [more]
WP_219729224.12.6e-0752.50hypothetical protein, partial [Pectobacterium odoriferum][more]
POE15980.12.6e-0752.50hypothetical protein BV923_23575 [Pectobacterium odoriferum][more]
XP_022930415.13.5e-0754.32uncharacterized protein LOC111436870 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EWV31.7e-0754.32uncharacterized protein LOC111436870 OS=Cucurbita moschata OX=3662 GN=LOC1114368... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS007710.1MS007710.1mRNA