MS007685 (gene) Bitter gourd (TR) v1

Overview


Name	MS007685
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S15
Location	scaffold13: 469599 .. 471431 (-)
RNA-Seq Expression	MS007685
Synteny	MS007685

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGCGGATGTGGAAACACCCGATGTTGCAGTGGCAGGACAGCCGAAGAAGAGGACGTTCAAGAAGTTCAGCTTCCGCGGCGTTGATTTGGATGCTTTGCTCGACATGTCCACCGATGAGCTCGTCAAGCTCTTCACTGCCCGTGCTCGCAGAAGGTTTGTATAACTTATTATGTGCTGGATTGATTTGGAGTTGGTTCGAATCTTATTTTACTCGTTAATTTATTTTTGATGATTTTTGCGATAGGTTCCGGAGGGGTTTGACAAGGAAGCCAATGGCCCTTATCAAGAAGCTGCGAAAAGCGGTAATTTTCTTTTACATCTTTTCGAGGGGATTGGTTCTAATTTTTTTTTGTCTTCTTTGTCGATTCTTACTGGCGGTGCTGCTTTCTGGAATGCGTTTTTAGTGTCAAGTGTTTTTATGTAAGTGGGTAGAAATGTAGGTGGATTTAGTACTGTATTTTTGTAAATCTAGGGTGTAATTTGAGTGATGTTGGTTTTGGGAAGTATCCTGATCCTGCCGCTCAATTCTGTTGCAATTTTCTTCTTGATTAGTAGATATGTGCAAAGTAAATTTATGTACTTATGGCATTACATCATTAAGTTATATTCTATTGGGTACTTTACAAGAACAAGTTTATGTATTTAGGGGATGATATCTTTAAGTTATGTTCTATTGGATGTAATTTCCAATGACTTGGACCCTTTGTTGGCTGGCTGGTATTAACTTATCTACTCAATCCCCATCTGCAATCTTCGTTAAATGAACAACATGATGGCATTTCCGAGAAATTCTCTTTTTTAACTGAGAATTGTGCTCTCTTGGTTCTCTGTATTTTAACTCTTCAAAGCTATTTTATAATTTGACATGCACTCTACTCTGCTGCCTATTCATTTAACTTATTCAAGAAGGAAGACTCAGGATAAGAACAAAGGGCAAGGCACTTAGAGCGAATGTCAAGAGAGAGGTTCTGTCGTGAGATATTAGGGAGTTATTAGAAGTTATGGTGTTTTGATGTTAGGGAGTTGTGTCTGAGACTCTGAATAGTATTAAGACTAGACAAGAGTAGTCTGTGTAAATTTTAGTATATAGTGAACTTCCTCTTGGATTCTTGTGATCTATAAGCTGGAGTTTCTATCCAAATACGTACAAGAACATAATCAGTCATTAGTTCAGATAAAGATTTATATGATAAGCCATTTGGAAATAGTTTCGAAATGGAATAGATTAACTGCCGCTTTTATTTCTGAGAGCAGCCATTGTTATACTGATTTTTTCATCTTGAACTTGGCATTTCTCACTTACTTCCTTTACTACTTCCAATTCTGTATCTTGATACCATGTTTTTGGTAATTGATTTTTCAAGTTGATATTTTAGTGGTAGATTTGCAAGTTGATGCACCATGAATCTCTGTAGTTGATCATTATATATTTGTGTTAATTTTTACATTTCTGTTCTATTATTTGCGAAGTCTTCCCCTCGGATACCTCCCCACCCTCCCCCAACTGGAAATAGATAAAGCAGAAGAATTATTATATCAATCGCTTTCTCATATATCATTAATTTATTTCTTTCCATCTCAATAGAAAAGGGAAGCCCCTCCTGGTGAGAAGCCAGAGCCCGTCCGAACTCACCTCCGAAACATGATCATTGTGCCAGAGATGATTGGAAGCATTATTGGTGTATACAACGGGAAAACCTTCAACCAAGTTGAAATCAAGCCGGAGATGATCGGCCATTACCTAGCAGAGTTCTCCATTTCATACAAGCCTGTCAAGCACGGTAGGCCTGGTATTGGTGCCACTCACTCCTCCAGGTTCATTCCTCTTAAG

mRNA sequence

CAGGCGGATGTGGAAACACCCGATGTTGCAGTGGCAGGACAGCCGAAGAAGAGGACGTTCAAGAAGTTCAGCTTCCGCGGCGTTGATTTGGATGCTTTGCTCGACATGTCCACCGATGAGCTCGTCAAGCTCTTCACTGCCCGTGCTCGCAGAAGGTTCCGGAGGGGTTTGACAAGGAAGCCAATGGCCCTTATCAAGAAGCTGCGAAAAGCGAAAAGGGAAGCCCCTCCTGGTGAGAAGCCAGAGCCCGTCCGAACTCACCTCCGAAACATGATCATTGTGCCAGAGATGATTGGAAGCATTATTGGTGTATACAACGGGAAAACCTTCAACCAAGTTGAAATCAAGCCGGAGATGATCGGCCATTACCTAGCAGAGTTCTCCATTTCATACAAGCCTGTCAAGCACGGTAGGCCTGGTATTGGTGCCACTCACTCCTCCAGGTTCATTCCTCTTAAG

Coding sequence (CDS)

CAGGCGGATGTGGAAACACCCGATGTTGCAGTGGCAGGACAGCCGAAGAAGAGGACGTTCAAGAAGTTCAGCTTCCGCGGCGTTGATTTGGATGCTTTGCTCGACATGTCCACCGATGAGCTCGTCAAGCTCTTCACTGCCCGTGCTCGCAGAAGGTTCCGGAGGGGTTTGACAAGGAAGCCAATGGCCCTTATCAAGAAGCTGCGAAAAGCGAAAAGGGAAGCCCCTCCTGGTGAGAAGCCAGAGCCCGTCCGAACTCACCTCCGAAACATGATCATTGTGCCAGAGATGATTGGAAGCATTATTGGTGTATACAACGGGAAAACCTTCAACCAAGTTGAAATCAAGCCGGAGATGATCGGCCATTACCTAGCAGAGTTCTCCATTTCATACAAGCCTGTCAAGCACGGTAGGCCTGGTATTGGTGCCACTCACTCCTCCAGGTTCATTCCTCTTAAG

Protein sequence

QADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK

Homology

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BLAST of MS007685 vs. NCBI nr
Match: XP_022138815.1 (40S ribosomal protein S15-4-like [Momordica charantia])

HSP 1 Score: 304.3 bits (778), Expect = 6.0e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of MS007685 vs. NCBI nr
Match: XP_022930318.1 (40S ribosomal protein S15-4 [Cucurbita moschata] >XP_023000557.1 40S ribosomal protein S15-4 [Cucurbita maxima] >XP_023513952.1 40S ribosomal protein S15-4 [Cucurbita pepo subsp. pepo] >KAG6593857.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026189.1 40S ribosomal protein S15 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295.0 bits (754), Expect = 3.6e-76
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVE  DVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 2   ADVEA-DVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of MS007685 vs. NCBI nr
Match: XP_022958790.1 (40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_023006761.1 40S ribosomal protein S15-4-like [Cucurbita maxima] >XP_023548520.1 40S ribosomal protein S15-4-like [Cucurbita pepo subsp. pepo] >KAG6574934.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013502.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.9 bits (751), Expect = 8.0e-76
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVE  DVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 2   ADVEA-DVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of MS007685 vs. NCBI nr
Match: KAF3452310.1 (hypothetical protein FNV43_RR02743 [Rhamnella rubrinervis])

HSP 1 Score: 293.1 bits (749), Expect = 1.4e-75
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVET DVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 2   ADVET-DVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of MS007685 vs. NCBI nr
Match: XP_031377235.1 (40S ribosomal protein S15-4 [Punica granatum])

HSP 1 Score: 292.4 bits (747), Expect = 2.3e-75
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVE P+VAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 2   ADVE-PEVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of MS007685 vs. ExPASy Swiss-Prot
Match: Q08112 (40S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.0e-74
Identity = 139/152 (91.45%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVE P+VA AG PKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 2   ADVE-PEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of MS007685 vs. ExPASy Swiss-Prot
Match: Q9FY64 (40S ribosomal protein S15-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15D PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.0e-74
Identity = 139/152 (91.45%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVE P+VA AG PKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 2   ADVE-PEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of MS007685 vs. ExPASy Swiss-Prot
Match: P31674 (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2 SV=2)

HSP 1 Score: 269.6 bits (688), Expect = 2.1e-71
Identity = 134/153 (87.58%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 2   ADVET-PDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 61
           ADVE   +VA   QPKKRTF+K+S+RGVDLDALLDMSTD+LV+LF ARARRRF+RGL RK
Sbjct: 2   ADVEVETEVAAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRK 61

Query: 62  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 121
           PMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMI
Sbjct: 62  PMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMI 121

Query: 122 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

[Close]

BLAST of MS007685 vs. ExPASy Swiss-Prot
Match: Q945U1 (40S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.8e-71
Identity = 135/152 (88.82%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADV         QPKKRTF+KFS+RGVDLD LLDM TDELVKLF ARARRRF+RGL RKP
Sbjct: 2   ADVSDAVDVGGAQPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of MS007685 vs. ExPASy Swiss-Prot
Match: O65059 (40S ribosomal protein S15 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.0e-70
Identity = 135/152 (88.82%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADV+   V    QPKKRTFKKFS+RGVDLDALLDM+++ELVKLF ARARRRF+RGL R+P
Sbjct: 4   ADVDVGPV----QPKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQP 63

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 64  MALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 123

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 124 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

[Close]

BLAST of MS007685 vs. ExPASy TrEMBL
Match: A0A6J1CAK1 (40S ribosomal protein S15-4-like OS=Momordica charantia OX=3673 GN=LOC111009892 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of MS007685 vs. ExPASy TrEMBL
Match: A0A6J1KDZ2 (40S ribosomal protein S15-4 OS=Cucurbita maxima OX=3661 GN=LOC111494798 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.7e-76
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVE  DVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 2   ADVEA-DVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of MS007685 vs. ExPASy TrEMBL
Match: A0A6J1EUT1 (40S ribosomal protein S15-4 OS=Cucurbita moschata OX=3662 GN=LOC111436804 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.7e-76
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVE  DVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 2   ADVEA-DVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of MS007685 vs. ExPASy TrEMBL
Match: A0A6J1KYN5 (40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111499397 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 3.9e-76
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVE  DVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 2   ADVEA-DVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of MS007685 vs. ExPASy TrEMBL
Match: A0A6J1H4G4 (40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111459956 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 3.9e-76
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVE  DVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 2   ADVEA-DVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of MS007685 vs. TAIR 10
Match: AT1G04270.1 (cytosolic ribosomal protein S15 )

HSP 1 Score: 278.1 bits (710), Expect = 4.3e-75
Identity = 139/152 (91.45%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVE P+VA AG PKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 2   ADVE-PEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of MS007685 vs. TAIR 10
Match: AT5G09510.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 278.1 bits (710), Expect = 4.3e-75
Identity = 139/152 (91.45%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVE P+VA AG PKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 2   ADVE-PEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of MS007685 vs. TAIR 10
Match: AT1G04270.2 (cytosolic ribosomal protein S15 )

HSP 1 Score: 271.9 bits (694), Expect = 3.1e-73
Identity = 138/152 (90.79%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 2   ADVETPDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 61
           ADVE P+VA AG PKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 2   ADVE-PEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 61

Query: 62  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121
           MALIKKLRK KREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 62  MALIKKLRK-KREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 121

Query: 122 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 122 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 151

[Close]

BLAST of MS007685 vs. TAIR 10
Match: AT5G09500.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 261.5 bits (667), Expect = 4.1e-70
Identity = 131/147 (89.12%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 7   PDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALIK 66
           P+VA AG  KKRTFKKFSFRGVDLDALLDMSTD+LVKLF +R RRRF RGLTRKPMALIK
Sbjct: 4   PEVAAAGIVKKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIK 63

Query: 67  KLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAE 126
           KLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIGHYLAE
Sbjct: 64  KLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAE 123

Query: 127 FSISYKPVKHGRPGIGATHSSRFIPLK 154
           FSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 124 FSISYKPVKHGRPGVGATNSSRFIPLK 150

[Close]

BLAST of MS007685 vs. TAIR 10
Match: AT5G43640.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 255.4 bits (651), Expect = 3.0e-68
Identity = 128/147 (87.07%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 7   PDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALIK 66
           P+V  AG  KKRTFKKFSFRGVDLDALLDMS ++LVK F++R RRRF RGLTRKPMALIK
Sbjct: 3   PEVVAAGIVKKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIK 62

Query: 67  KLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAE 126
           KLRKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAE
Sbjct: 63  KLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAE 122

Query: 127 FSISYKPVKHGRPGIGATHSSRFIPLK 154
           FSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 123 FSISYKPVKHGRPGVGATNSSRFIPLK 149

The following BLAST results are available for this feature:

BLAST of MS007685 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138815.1	6.0e-79	100.00	40S ribosomal protein S15-4-like [Momordica charantia]	[more]
XP_022930318.1	3.6e-76	98.68	40S ribosomal protein S15-4 [Cucurbita moschata] >XP_023000557.1 40S ribosomal p...	[more]
XP_022958790.1	8.0e-76	98.03	40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_023006761.1 40S riboso...	[more]
KAF3452310.1	1.4e-75	98.03	hypothetical protein FNV43_RR02743 [Rhamnella rubrinervis]	[more]
XP_031377235.1	2.3e-75	97.37	40S ribosomal protein S15-4 [Punica granatum]	[more]

BLAST of MS007685 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08112	6.0e-74	91.45	40S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1	[more]
Q9FY64	6.0e-74	91.45	40S ribosomal protein S15-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15D PE=2 SV=1	[more]
P31674	2.1e-71	87.58	40S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2...	[more]
Q945U1	2.8e-71	88.82	40S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1	[more]
O65059	4.0e-70	88.82	40S ribosomal protein S15 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1	[more]

BLAST of MS007685 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CAK1	2.9e-79	100.00	40S ribosomal protein S15-4-like OS=Momordica charantia OX=3673 GN=LOC111009892 ...	[more]
A0A6J1KDZ2	1.7e-76	98.68	40S ribosomal protein S15-4 OS=Cucurbita maxima OX=3661 GN=LOC111494798 PE=3 SV=...	[more]
A0A6J1EUT1	1.7e-76	98.68	40S ribosomal protein S15-4 OS=Cucurbita moschata OX=3662 GN=LOC111436804 PE=3 S...	[more]
A0A6J1KYN5	3.9e-76	98.03	40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111499397 PE=...	[more]
A0A6J1H4G4	3.9e-76	98.03	40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111459956 P...	[more]

BLAST of MS007685 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04270.1	4.3e-75	91.45	cytosolic ribosomal protein S15	[more]
AT5G09510.1	4.3e-75	91.45	Ribosomal protein S19 family protein	[more]
AT1G04270.2	3.1e-73	90.79	cytosolic ribosomal protein S15	[more]
AT5G09500.1	4.1e-70	89.12	Ribosomal protein S19 family protein	[more]
AT5G43640.1	3.0e-68	87.07	Ribosomal protein S19 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002222	Ribosomal protein S19/S15	PRINTS	PR00975	RIBOSOMALS19	coord: 106..118 score: 42.93 coord: 118..133 score: 46.98 coord: 86..105 score: 46.13
IPR002222	Ribosomal protein S19/S15	PIRSF	PIRSF002144	RPS19p_RPS19a_RPS15e_RPS19o	coord: 10..153 e-value: 3.5E-38 score: 127.8
IPR002222	Ribosomal protein S19/S15	PFAM	PF00203	Ribosomal_S19	coord: 51..136 e-value: 1.7E-33 score: 114.3
IPR002222	Ribosomal protein S19/S15	PANTHER	PTHR11880	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	coord: 2..153
IPR002222	Ribosomal protein S19/S15	HAMAP	MF_00531	Ribosomal_S19	coord: 49..142 score: 21.249146
IPR023575	Ribosomal protein S19/S15, superfamily	GENE3D	3.30.860.10	30s Ribosomal Protein S19; Chain A	coord: 10..153 e-value: 4.7E-73 score: 245.5
IPR023575	Ribosomal protein S19/S15, superfamily	SUPERFAMILY	54570	Ribosomal protein S19	coord: 56..137
IPR005713	Ribosomal protein S19A/S15e	TIGRFAM	TIGR01025	TIGR01025	coord: 20..153 e-value: 4.9E-71 score: 234.8
None	No IPR available	PANTHER	PTHR11880:SF50	LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15	coord: 2..153
IPR020934	Ribosomal protein S19 conserved site	PROSITE	PS00323	RIBOSOMAL_S19	coord: 106..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007685.1	MS007685.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome