MS007656 (gene) Bitter gourd (TR) v1

Overview
NameMS007656
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionEpidermal patterning factor-like protein
Locationscaffold13: 223524 .. 223736 (-)
RNA-Seq ExpressionMS007656
SyntenyMS007656
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAAAACAGAGGGAAGCGTGCCGGCGCCGGAAGTGGTGATTCGGCGGAGATTGGGTGGGCCCGGGTCGTCGCCGCCGACCTGCAGATCGAAGTGCGGGAGTTGCTCGCCGTGCACGGCGGTGCACGTGCCAATTCAGCCGGGATTAAGCCTGCCGCTGGAGTATTACCCAGAAGCGTGGCGCTGCAAATGCGGCAATTCCCTCTTCATGCCA

mRNA sequence

GAGAAAACAGAGGGAAGCGTGCCGGCGCCGGAAGTGGTGATTCGGCGGAGATTGGGTGGGCCCGGGTCGTCGCCGCCGACCTGCAGATCGAAGTGCGGGAGTTGCTCGCCGTGCACGGCGGTGCACGTGCCAATTCAGCCGGGATTAAGCCTGCCGCTGGAGTATTACCCAGAAGCGTGGCGCTGCAAATGCGGCAATTCCCTCTTCATGCCA

Coding sequence (CDS)

GAGAAAACAGAGGGAAGCGTGCCGGCGCCGGAAGTGGTGATTCGGCGGAGATTGGGTGGGCCCGGGTCGTCGCCGCCGACCTGCAGATCGAAGTGCGGGAGTTGCTCGCCGTGCACGGCGGTGCACGTGCCAATTCAGCCGGGATTAAGCCTGCCGCTGGAGTATTACCCAGAAGCGTGGCGCTGCAAATGCGGCAATTCCCTCTTCATGCCA

Protein sequence

EKTEGSVPAPEVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFMP
Homology
BLAST of MS007656 vs. NCBI nr
Match: XP_022138712.1 (EPIDERMAL PATTERNING FACTOR-like protein 4 [Momordica charantia])

HSP 1 Score: 158.7 bits (400), Expect = 1.9e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1   EKTEGSVPAPEVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAW 60
           EKTEGSVPAPEVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAW
Sbjct: 40  EKTEGSVPAPEVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAW 99

Query: 61  RCKCGNSLFMP 72
           RCKCGNSLFMP
Sbjct: 100 RCKCGNSLFMP 110

BLAST of MS007656 vs. NCBI nr
Match: XP_008449315.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo] >KAA0057450.1 EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo var. makuwa] >TYK30149.1 EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0

Query: 1   EKTEGSVPA---PEVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYP 60
           E+ E  +PA     V+ RRRL GPGSSPPTCRSKCGSC PCTAVHVPIQPGLSLPLEYYP
Sbjct: 35  EEAEAKLPAGTRERVLTRRRLTGPGSSPPTCRSKCGSCRPCTAVHVPIQPGLSLPLEYYP 94

Query: 61  EAWRCKCGNSLFMP 72
           EAWRCKCGN+L+MP
Sbjct: 95  EAWRCKCGNTLYMP 108

BLAST of MS007656 vs. NCBI nr
Match: KAG6593874.1 (EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 12  VVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFMP 71
           VV RRRL GPGSSPPTCRSKCGSC+PCTAVHVPI PGLSLPLEYYPEAWRCKCGNSL+MP
Sbjct: 55  VVTRRRLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKCGNSLYMP 114

BLAST of MS007656 vs. NCBI nr
Match: XP_023513820.1 (EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 12  VVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFMP 71
           VV RRRL GPGSSPPTCRSKCGSC+PCTAVHVPI PGLSLPLEYYPEAWRCKCGNSL+MP
Sbjct: 55  VVTRRRLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKCGNSLYMP 114

BLAST of MS007656 vs. NCBI nr
Match: XP_023000566.1 (EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita maxima])

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 12  VVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFMP 71
           VV RRRL GPGSSPPTCRSKCGSC+PCTAVHVPI PGLSLPLEYYPEAWRCKCGNSL+MP
Sbjct: 54  VVTRRRLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKCGNSLYMP 113

BLAST of MS007656 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.7e-27
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 0

Query: 1   EKTEGSVPAPEVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAW 60
           ++T   +P   +   +R GGPGSSPPTCRSKCG C PC  VHVPIQPGLS+PLEYYPEAW
Sbjct: 39  QRTGSDLPGGFIRSNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAW 98

Query: 61  RCKCGNSLFMP 72
           RCKCGN LFMP
Sbjct: 99  RCKCGNKLFMP 109

BLAST of MS007656 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.4e-25
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 0

Query: 11  EVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFM 70
           ++V ++RLGGPGS PP CR KCG C PC AVHVPIQPGL +PLEYYPEAWRCKCGN LFM
Sbjct: 47  QIVDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFM 106

Query: 71  P 72
           P
Sbjct: 107 P 107

BLAST of MS007656 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.7e-20
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 11  EVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFM 70
           E  +RR L G GSSPP C SKCG C+PC  VHVP+ PG  +  EYYPEAWRCKCGN L+M
Sbjct: 96  EAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYM 155

Query: 71  P 72
           P
Sbjct: 156 P 156

BLAST of MS007656 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.5e-07
Identity = 20/49 (40.82%), Postives = 29/49 (59.18%), Query Frame = 0

Query: 23  SSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFMP 72
           SSPP C++KC  C PC    + + P  + P +YYP+ W C C N ++ P
Sbjct: 468 SSPPNCKNKCKGCQPCKPKLIIVHP--NKPQDYYPQKWVCSCHNKIYNP 514

BLAST of MS007656 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.5e-07
Identity = 20/49 (40.82%), Postives = 29/49 (59.18%), Query Frame = 0

Query: 23  SSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFMP 72
           SSPP C++KC  C PC    + + P  + P +YYP+ W C C N ++ P
Sbjct: 461 SSPPNCKNKCKGCQPCKPKLIIVHP--NQPEDYYPQRWVCSCHNKIYNP 507

BLAST of MS007656 vs. ExPASy TrEMBL
Match: A0A6J1CBX1 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111009812 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.1e-36
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1   EKTEGSVPAPEVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAW 60
           EKTEGSVPAPEVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAW
Sbjct: 40  EKTEGSVPAPEVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAW 99

Query: 61  RCKCGNSLFMP 72
           RCKCGNSLFMP
Sbjct: 100 RCKCGNSLFMP 110

BLAST of MS007656 vs. ExPASy TrEMBL
Match: A0A5A7UQS2 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001330 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.9e-27
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0

Query: 1   EKTEGSVPA---PEVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYP 60
           E+ E  +PA     V+ RRRL GPGSSPPTCRSKCGSC PCTAVHVPIQPGLSLPLEYYP
Sbjct: 35  EEAEAKLPAGTRERVLTRRRLTGPGSSPPTCRSKCGSCRPCTAVHVPIQPGLSLPLEYYP 94

Query: 61  EAWRCKCGNSLFMP 72
           EAWRCKCGN+L+MP
Sbjct: 95  EAWRCKCGNTLYMP 108

BLAST of MS007656 vs. ExPASy TrEMBL
Match: A0A1S3BMN7 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103491230 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.9e-27
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0

Query: 1   EKTEGSVPA---PEVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYP 60
           E+ E  +PA     V+ RRRL GPGSSPPTCRSKCGSC PCTAVHVPIQPGLSLPLEYYP
Sbjct: 35  EEAEAKLPAGTRERVLTRRRLTGPGSSPPTCRSKCGSCRPCTAVHVPIQPGLSLPLEYYP 94

Query: 61  EAWRCKCGNSLFMP 72
           EAWRCKCGN+L+MP
Sbjct: 95  EAWRCKCGNTLYMP 108

BLAST of MS007656 vs. ExPASy TrEMBL
Match: A0A6J1KG67 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111494809 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.7e-27
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 12  VVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFMP 71
           VV RRRL GPGSSPPTCRSKCGSC+PCTAVHVPI PGLSLPLEYYPEAWRCKCGNSL+MP
Sbjct: 54  VVTRRRLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKCGNSLYMP 113

BLAST of MS007656 vs. ExPASy TrEMBL
Match: A0A6J1ERG1 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111436899 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.7e-27
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 12  VVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFMP 71
           VV RRRL GPGSSPPTCRSKCGSC+PCTAVHVPI PGLSLPLEYYPEAWRCKCGNSL+MP
Sbjct: 59  VVTRRRLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKCGNSLYMP 118

BLAST of MS007656 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 120.9 bits (302), Expect = 4.0e-28
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 0

Query: 1   EKTEGSVPAPEVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAW 60
           ++T   +P   +   +R GGPGSSPPTCRSKCG C PC  VHVPIQPGLS+PLEYYPEAW
Sbjct: 39  QRTGSDLPGGFIRSNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAW 98

Query: 61  RCKCGNSLFMP 72
           RCKCGN LFMP
Sbjct: 99  RCKCGNKLFMP 109

BLAST of MS007656 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-26
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 0

Query: 11  EVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFM 70
           ++V ++RLGGPGS PP CR KCG C PC AVHVPIQPGL +PLEYYPEAWRCKCGN LFM
Sbjct: 47  QIVDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFM 106

Query: 71  P 72
           P
Sbjct: 107 P 107

BLAST of MS007656 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 97.4 bits (241), Expect = 4.8e-21
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 11  EVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFM 70
           E  +RR L G GSSPP C SKCG C+PC  VHVP+ PG  +  EYYPEAWRCKCGN L+M
Sbjct: 170 EAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYM 229

Query: 71  P 72
           P
Sbjct: 230 P 230

BLAST of MS007656 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 97.4 bits (241), Expect = 4.8e-21
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 11  EVVIRRRLGGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLFM 70
           E  +RR L G GSSPP C SKCG C+PC  VHVP+ PG  +  EYYPEAWRCKCGN L+M
Sbjct: 96  EAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYM 155

Query: 71  P 72
           P
Sbjct: 156 P 156

BLAST of MS007656 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 2.5e-06
Identity = 27/75 (36.00%), Postives = 33/75 (44.00%), Query Frame = 0

Query: 22  GSSPPTC-RSKCGSCSPCTAVHVPIQPGLSL--PL----------------------EYY 72
           GS PP C R +C SC  C A+ VP  P   L  PL                       Y 
Sbjct: 54  GSRPPRCERVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYK 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022138712.11.9e-35100.00EPIDERMAL PATTERNING FACTOR-like protein 4 [Momordica charantia][more]
XP_008449315.11.2e-2678.38PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo] >KAA0057450... [more]
KAG6593874.11.6e-2691.67EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subs... [more]
XP_023513820.11.6e-2691.67EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita pepo subsp. pepo][more]
XP_023000566.11.6e-2691.67EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q2V3I35.7e-2770.42EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q9LUH92.4e-2577.05EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q1PEY66.7e-2065.57EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q7M1E76.5e-0740.82Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1[more]
Q9FY198.5e-0740.82Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1CBX19.1e-36100.00Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A5A7UQS25.9e-2778.38Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3BMN75.9e-2778.38Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103491230... [more]
A0A6J1KG677.7e-2791.67Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A6J1ERG17.7e-2791.67Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
Match NameE-valueIdentityDescription
AT4G14723.14.0e-2870.42BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);... [more]
AT3G22820.11.7e-2677.05allergen-related [more]
AT2G30370.14.8e-2165.57allergen-related [more]
AT2G30370.24.8e-2165.57allergen-related [more]
AT4G37810.12.5e-0636.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 21..71
e-value: 6.4E-21
score: 74.1
NoneNo IPR availablePANTHERPTHR33109:SF55EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 11..71
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 11..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS007656.1MS007656.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010374 stomatal complex development