MS007655 (gene) Bitter gourd (TR) v1

Overview


Name	MS007655
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase III subunit RPC9
Location	scaffold13: 217485 .. 217856 (+)
RNA-Seq Expression	MS007655
Synteny	MS007655

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCGCAGATTAGAGGCCAATGCAGGCCCTCTTACAAATTTTGAGGTGCTCGACTTTCTACGATCAAAGGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCAAAAGTGGAACCATCTGAGTATAAGGTTACAGATTTTATTCCCTTCTTTTTGTGCTGGCTCTACGATTCGATTTTGCAGATTTTAATCAAAATTTTGTCTTGTTTTTTTTAGGTTTATGATTATTTGAATCAGACTCCTGCTTGTTATCAAACGAGAGAATCTATCATTGAGTTTGTTGACAAGTCTAAAAAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAACTTGCGGCCGACTACCCCGGTTGAGATTTTTCCGGTATTT

mRNA sequence

AATCGCAGATTAGAGGCCAATGCAGGCCCTCTTACAAATTTTGAGGTGCTCGACTTTCTACGATCAAAGGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCAAAAGTGGAACCATCTGAGTATAAGGTTTATGATTATTTGAATCAGACTCCTGCTTGTTATCAAACGAGAGAATCTATCATTGAGTTTGTTGACAAGTCTAAAAAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAACTTGCGGCCGACTACCCCGGTTGAGATTTTTCCGGTATTT

Coding sequence (CDS)

AATCGCAGATTAGAGGCCAATGCAGGCCCTCTTACAAATTTTGAGGTGCTCGACTTTCTACGATCAAAGGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCAAAAGTGGAACCATCTGAGTATAAGGTTTATGATTATTTGAATCAGACTCCTGCTTGTTATCAAACGAGAGAATCTATCATTGAGTTTGTTGACAAGTCTAAAAAGTATGATCTCGCGAAAGCTGAAATTCTCAATATCATCAACTTGCGGCCGACTACCCCGGTTGAGATTTTTCCGGTATTT

Protein sequence

NRRLEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPVF

Homology

[Close]

BLAST of MS007655 vs. NCBI nr
Match: XP_022138348.1 (uncharacterized protein LOC111009544 [Momordica charantia])

HSP 1 Score: 181.0 bits (458), Expect = 4.7e-42
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQ RESIIEF
Sbjct: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQRRESIIEF 63

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
          VDKSKKYDLAKAEILNIINLRPTTPVEIFP+
Sbjct: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPI 94

[Close]

BLAST of MS007655 vs. NCBI nr
Match: KAG7026218.1 (DNA-directed RNA polymerase III subunit RPC9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.3 bits (438), Expect = 9.8e-40
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQTPA YQTRE+IIEF
Sbjct: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPASYQTREAIIEF 63

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
          VDKSKKYDLAKAEILNI+NLRP TPVEIFP+
Sbjct: 64 VDKSKKYDLAKAEILNIVNLRPITPVEIFPI 94

[Close]

BLAST of MS007655 vs. NCBI nr
Match: KAG6593875.1 (VAN3-binding protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173.3 bits (438), Expect = 9.8e-40
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 4   LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
           LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQTPA YQTRE+IIEF
Sbjct: 479 LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPASYQTREAIIEF 538

Query: 64  VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
           VDKSKKYDLAKAEILNI+NLRP TPVEIFP+
Sbjct: 539 VDKSKKYDLAKAEILNIVNLRPITPVEIFPI 569

[Close]

BLAST of MS007655 vs. NCBI nr
Match: XP_022930221.1 (DNA-directed RNA polymerase III subunit RPC9-like [Cucurbita moschata])

HSP 1 Score: 173.3 bits (438), Expect = 9.8e-40
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQTPA YQTRE+IIEF
Sbjct: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPASYQTREAIIEF 63

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
          VDKSKKYDLAKAEILNI+NLRP TPVEIFP+
Sbjct: 64 VDKSKKYDLAKAEILNIVNLRPITPVEIFPI 94

[Close]

BLAST of MS007655 vs. NCBI nr
Match: XP_023000556.1 (DNA-directed RNA polymerase III subunit RPC9-like [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQTPA  QTRE+IIEF
Sbjct: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPASNQTREAIIEF 63

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
          VDKSKKYDLAKAEILNI+NLRP TPVEIFP+
Sbjct: 64 VDKSKKYDLAKAEILNIVNLRPITPVEIFPI 94

[Close]

BLAST of MS007655 vs. ExPASy Swiss-Prot
Match: Q60482 (DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus OX=10141 GN=CRCP PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-06
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 5  EANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPS---------EYKVYDYLNQTPACYQ 64
          +AN+  L+N+EV   L      KD  R   K++ S          Y+   YL++TP  +Q
Sbjct: 5  DANSALLSNYEVFQLLTD---LKDQRRESGKMKHSAGQQNLNTITYETLKYLSKTPCRHQ 64

Query: 65 TRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI 92
          + E + EF+   K + L KAE L ++N RP T VEI
Sbjct: 65 SPEIVREFLTAMKSHKLTKAEKLQLLNHRPMTAVEI 97

[Close]

BLAST of MS007655 vs. ExPASy Swiss-Prot
Match: A0JN61 (DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus OX=9913 GN=CRCP PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.7e-06
Identity = 30/93 (32.26%), Postives = 47/93 (50.54%), Query Frame = 0


Query: 5  EANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRE 64
          +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP  +Q+ E
Sbjct: 5  DANAALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCKHQSPE 64

Query: 65 SIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI 92
           + EF+   K + L KAE L ++N RP T VEI
Sbjct: 65 IVREFLTAMKSHKLTKAEKLQLLNHRPVTAVEI 97

[Close]

BLAST of MS007655 vs. ExPASy Swiss-Prot
Match: O75575 (DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens OX=9606 GN=CRCP PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.6e-05
Identity = 29/93 (31.18%), Postives = 47/93 (50.54%), Query Frame = 0


Query: 5  EANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRE 64
          +AN+  L+N+EV   L      R +      +     +    Y+   Y+++TP  +Q+ E
Sbjct: 5  DANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQSPE 64

Query: 65 SIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI 92
           + EF+   K + L KAE L ++N RP T VEI
Sbjct: 65 IVREFLTALKSHKLTKAEKLQLLNHRPVTAVEI 97

[Close]

BLAST of MS007655 vs. ExPASy Swiss-Prot
Match: O35427 (DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus OX=10090 GN=Crcp PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 29/93 (31.18%), Postives = 45/93 (48.39%), Query Frame = 0


Query: 5  EANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRE 64
          +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP   Q+  
Sbjct: 5  DANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCRNQSPA 64

Query: 65 SIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI 92
           + EF+   K + L KAE L ++N RP T VEI
Sbjct: 65 IVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEI 97

[Close]

BLAST of MS007655 vs. ExPASy Swiss-Prot
Match: Q8VHM6 (DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus OX=10116 GN=Crcp PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 29/93 (31.18%), Postives = 45/93 (48.39%), Query Frame = 0


Query: 5  EANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRE 64
          +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP   Q+  
Sbjct: 5  DANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCKNQSPA 64

Query: 65 SIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI 92
           + EF+   K + L KAE L ++N RP T VEI
Sbjct: 65 IVQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEI 97

[Close]

BLAST of MS007655 vs. ExPASy TrEMBL
Match: A0A6J1CCS4 (DNA-directed RNA polymerase III subunit RPC9 OS=Momordica charantia OX=3673 GN=LOC111009544 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.3e-42
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQ RESIIEF
Sbjct: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQRRESIIEF 63

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
          VDKSKKYDLAKAEILNIINLRPTTPVEIFP+
Sbjct: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPI 94

[Close]

BLAST of MS007655 vs. ExPASy TrEMBL
Match: A0A6J1EQC1 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LOC111436740 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQTPA YQTRE+IIEF
Sbjct: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPASYQTREAIIEF 63

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
          VDKSKKYDLAKAEILNI+NLRP TPVEIFP+
Sbjct: 64 VDKSKKYDLAKAEILNIVNLRPITPVEIFPI 94

[Close]

BLAST of MS007655 vs. ExPASy TrEMBL
Match: A0A6J1KG58 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC111494797 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.3e-39
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQTPA  QTRE+IIEF
Sbjct: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPASNQTREAIIEF 63

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
          VDKSKKYDLAKAEILNI+NLRP TPVEIFP+
Sbjct: 64 VDKSKKYDLAKAEILNIVNLRPITPVEIFPI 94

[Close]

BLAST of MS007655 vs. ExPASy TrEMBL
Match: A0A6J1L324 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC111499396 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.6e-38
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          LEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQT AC QTRE+IIEF
Sbjct: 4  LEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAIIEF 63

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
          VDKSKKYDLAKAE+LNI+NLRP TPVEIFP+
Sbjct: 64 VDKSKKYDLAKAELLNILNLRPITPVEIFPI 94

[Close]

BLAST of MS007655 vs. ExPASy TrEMBL
Match: A0A6J1H2X6 (DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LOC111459926 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.6e-38
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          LEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQT AC QTRE+IIEF
Sbjct: 4  LEANAGALTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTHACNQTREAIIEF 63

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
          VDKSKKYDLAKAE+LNI+NLRP TPVEIFP+
Sbjct: 64 VDKSKKYDLAKAELLNILNLRPITPVEIFPI 94

[Close]

BLAST of MS007655 vs. TAIR 10
Match: AT5G62950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 121.7 bits (304), Expect = 3.2e-28
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          ++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKVYDYL +T A  QTRESI +F
Sbjct: 4  VKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKF 63

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
           DK K + LAKAEILNIINLRP++ VE+ P+
Sbjct: 64 ADKCKDFKLAKAEILNIINLRPSSIVELLPI 94

[Close]

BLAST of MS007655 vs. TAIR 10
Match: AT5G62950.3 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 121.7 bits (304), Expect = 3.2e-28
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          ++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKVYDYL +T A  QTRESI +F
Sbjct: 4  VKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKF 63

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
           DK K + LAKAEILNIINLRP++ VE+ P+
Sbjct: 64 ADKCKDFKLAKAEILNIINLRPSSIVELLPI 94

[Close]

BLAST of MS007655 vs. TAIR 10
Match: AT5G62950.2 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 120.9 bits (302), Expect = 5.4e-28
Identity = 61/90 (67.78%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          ++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKVYDYL +T A  QTRESI +F
Sbjct: 4  VKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKF 63

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFP 94
           DK K + LAKAEILNIINLRP++ VE+ P
Sbjct: 64 ADKCKDFKLAKAEILNIINLRPSSIVELLP 93

[Close]

BLAST of MS007655 vs. TAIR 10
Match: AT3G28956.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 114.4 bits (285), Expect = 5.1e-26
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 4  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEF 63
          ++ANAG LTNFE+LDFL S+GA+KD TRV+A +  SEYKVYDYL +T A  QTRES+ + 
Sbjct: 1  MKANAGALTNFELLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVNKS 60

Query: 64 VDKSKKYDLAKAEILNIINLRPTTPVEIFPV 95
           DK K + LAKAEILNIINL P++ VE+ P+
Sbjct: 61 ADKCKDFKLAKAEILNIINLWPSSIVELLPI 91

The following BLAST results are available for this feature:

BLAST of MS007655 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138348.1	4.7e-42	97.80	uncharacterized protein LOC111009544 [Momordica charantia]	[more]
KAG7026218.1	9.8e-40	93.41	DNA-directed RNA polymerase III subunit RPC9 [Cucurbita argyrosperma subsp. argy...	[more]
KAG6593875.1	9.8e-40	93.41	VAN3-binding protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022930221.1	9.8e-40	93.41	DNA-directed RNA polymerase III subunit RPC9-like [Cucurbita moschata]	[more]
XP_023000556.1	1.1e-38	92.31	DNA-directed RNA polymerase III subunit RPC9-like [Cucurbita maxima]	[more]

BLAST of MS007655 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q60482	1.9e-06	35.42	DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus OX=10141 GN=CRCP...	[more]
A0JN61	5.7e-06	32.26	DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus OX=9913 GN=CRCP PE=2 ...	[more]
O75575	1.6e-05	31.18	DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens OX=9606 GN=CRCP PE=...	[more]
O35427	1.1e-04	31.18	DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus OX=10090 GN=Crcp PE...	[more]
Q8VHM6	1.1e-04	31.18	DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus OX=10116 GN=Cr...	[more]

BLAST of MS007655 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CCS4	2.3e-42	97.80	DNA-directed RNA polymerase III subunit RPC9 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1EQC1	4.8e-40	93.41	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KG58	5.3e-39	92.31	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1L324	7.6e-38	90.11	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H2X6	7.6e-38	90.11	DNA-directed RNA polymerase III subunit RPC9 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of MS007655 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62950.1	3.2e-28	67.03	RNA polymerase II, Rpb4, core protein	[more]
AT5G62950.3	3.2e-28	67.03	RNA polymerase II, Rpb4, core protein	[more]
AT5G62950.2	5.4e-28	67.78	RNA polymerase II, Rpb4, core protein	[more]
AT3G28956.1	5.1e-26	62.64	RNA polymerase II, Rpb4, core protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 3..94 e-value: 6.8E-9 score: 45.5
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 11..91 e-value: 1.8E-14 score: 54.1
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 2..95 e-value: 1.6E-18 score: 68.8
IPR038846	DNA-directed RNA polymerase III subunit RPC9	PANTHER	PTHR15561	CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN	coord: 4..93
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 6..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007655.1	MS007655.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006384	transcription initiation from RNA polymerase III promoter
cellular_component	GO:0030880	RNA polymerase complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0000166	nucleotide binding