MS007461 (gene) Bitter gourd (TR) v1

Overview
NameMS007461
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Locationscaffold447: 185681 .. 186043 (-)
RNA-Seq ExpressionMS007461
SyntenyMS007461
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACGCGATTAAAGCTAAGAATCAAATTTCAGATGCTAAGTTGAGAAGTGAATGGATCTTATCTTACGTGAAGGAGTTTAAAGACAGTAACAGATTGTCCCATGGCAGTTCCTACTATCAAGCTTGCAACAGCAATGCAGATCAAATTAATGAGAGTCGTTGGTTGCCCCCTCCAACTGGTTGGGTGAAGTTTAATGTGGACGCTGCCTGCAAAAAATCCCTCTCTAGAACTGGTGTGGGTATTGTGGGCAGAGATGAAAAGGAACAAATTATAGCAGCAAATTTTCGAAGTTTTGAGGTTTACCATGATCCTTTGACGGCAGAAACTTTTGCTTTTCTTGAAGGTATTCGCATGGCTGAGCGT

mRNA sequence

AACGCGATTAAAGCTAAGAATCAAATTTCAGATGCTAAGTTGAGAAGTGAATGGATCTTATCTTACGTGAAGGAGTTTAAAGACAGTAACAGATTGTCCCATGGCAGTTCCTACTATCAAGCTTGCAACAGCAATGCAGATCAAATTAATGAGAGTCGTTGGTTGCCCCCTCCAACTGGTTGGGTGAAGTTTAATGTGGACGCTGCCTGCAAAAAATCCCTCTCTAGAACTGGTGTGGGTATTGTGGGCAGAGATGAAAAGGAACAAATTATAGCAGCAAATTTTCGAAGTTTTGAGGTTTACCATGATCCTTTGACGGCAGAAACTTTTGCTTTTCTTGAAGGTATTCGCATGGCTGAGCGT

Coding sequence (CDS)

AACGCGATTAAAGCTAAGAATCAAATTTCAGATGCTAAGTTGAGAAGTGAATGGATCTTATCTTACGTGAAGGAGTTTAAAGACAGTAACAGATTGTCCCATGGCAGTTCCTACTATCAAGCTTGCAACAGCAATGCAGATCAAATTAATGAGAGTCGTTGGTTGCCCCCTCCAACTGGTTGGGTGAAGTTTAATGTGGACGCTGCCTGCAAAAAATCCCTCTCTAGAACTGGTGTGGGTATTGTGGGCAGAGATGAAAAGGAACAAATTATAGCAGCAAATTTTCGAAGTTTTGAGGTTTACCATGATCCTTTGACGGCAGAAACTTTTGCTTTTCTTGAAGGTATTCGCATGGCTGAGCGT

Protein sequence

NAIKAKNQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMAER
Homology
BLAST of MS007461 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 112.5 bits (280), Expect = 2.6e-21
Identity = 58/115 (50.43%), Postives = 76/115 (66.09%), Query Frame = 0

Query: 1   NAIKAKNQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTG 60
           NAI+ + QI DAK+RS+WIL+YV++F+  +  S G    Q   S+ D+  E+ W PPP G
Sbjct: 100 NAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAG 159

Query: 61  WVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEG 116
           W+K NVDAACKK   RTG+GIV R+EK QI+AA        HDPL AE+ A  +G
Sbjct: 160 WIKINVDAACKKHQFRTGIGIVCRNEKGQILAA------ASHDPLMAESLALFDG 208

BLAST of MS007461 vs. NCBI nr
Match: XP_022142956.1 (uncharacterized protein LOC111012950 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-12
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 59  TGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRM 118
           TGW+K NVD ACKK   RT +GIV R+EK QI+AA  R  E YHDPL AE+ A LEG+R+
Sbjct: 30  TGWIKINVDVACKKHQFRTAIGIVCRNEKGQILAAASRRMEAYHDPLMAESLALLEGLRL 89

Query: 119 AE 121
           A+
Sbjct: 90  AD 91

BLAST of MS007461 vs. NCBI nr
Match: XP_022154440.1 (uncharacterized protein LOC111021711 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 0

Query: 7   NQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNV 66
           N + D    ++  + Y       +R  H  +     NSN    + + W PP   WVK NV
Sbjct: 81  NDLLDKGAINKITIKYRHPIPKLDRNFHERADIHLPNSNKAGKDVNYWAPPSPDWVKINV 140

Query: 67  DAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMAE 121
           D ACK S SRTG+G+V +++K +II A  R  +V+++PL  ET A LEG+ + +
Sbjct: 141 DTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQ 194

BLAST of MS007461 vs. NCBI nr
Match: XP_022141766.1 (uncharacterized protein LOC111012047 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-07
Identity = 40/113 (35.40%), Postives = 56/113 (49.56%), Query Frame = 0

Query: 9   ISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDA 68
           ++D    S+WI +Y  E     R ++ +     C         + W PP  G VK NVDA
Sbjct: 51  VADVHTESDWITNYAMELLTRRRKTNEAQKNLPC--------LAIWKPPSKGTVKLNVDA 110

Query: 69  ACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMAER 122
           A      R GVG++ RD++  I+AA   S  V + PL AE  A  E +R+AER
Sbjct: 111 AFDVRNQRGGVGVLVRDDRNSILAALISSHNV-NSPLLAEICAIREAVRLAER 154

BLAST of MS007461 vs. NCBI nr
Match: RLM58814.1 (hypothetical protein C2845_PM18G04280 [Panicum miliaceum])

HSP 1 Score: 64.3 bits (155), Expect = 8.2e-07
Identity = 29/73 (39.73%), Postives = 40/73 (54.79%), Query Frame = 0

Query: 47  DQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLT 106
           +Q  +S+W PPP GWVKFNVD +  +     G+G++ RD   Q+I    R        + 
Sbjct: 83  EQERKSKWEPPPVGWVKFNVDGSFVQQSGEAGIGVIARDSSVQVILTGRRVLFRCQGAVE 142

Query: 107 AETFAFLEGIRMA 120
           AE  A LEG R+A
Sbjct: 143 AEARACLEGFRLA 155

BLAST of MS007461 vs. ExPASy TrEMBL
Match: A0A6J1CTE3 (uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014578 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 58/115 (50.43%), Postives = 76/115 (66.09%), Query Frame = 0

Query: 1   NAIKAKNQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTG 60
           NAI+ + QI DAK+RS+WIL+YV++F+  +  S G    Q   S+ D+  E+ W PPP G
Sbjct: 100 NAIRMQRQIPDAKIRSDWILTYVRDFQVRDVPSLGDFRIQEDASSNDRTIENYWSPPPAG 159

Query: 61  WVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEG 116
           W+K NVDAACKK   RTG+GIV R+EK QI+AA        HDPL AE+ A  +G
Sbjct: 160 WIKINVDAACKKHQFRTGIGIVCRNEKGQILAA------ASHDPLMAESLALFDG 208

BLAST of MS007461 vs. ExPASy TrEMBL
Match: A0A6J1CNR4 (uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012950 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.8e-13
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 59  TGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRM 118
           TGW+K NVD ACKK   RT +GIV R+EK QI+AA  R  E YHDPL AE+ A LEG+R+
Sbjct: 30  TGWIKINVDVACKKHQFRTAIGIVCRNEKGQILAAASRRMEAYHDPLMAESLALLEGLRL 89

Query: 119 AE 121
           A+
Sbjct: 90  AD 91

BLAST of MS007461 vs. ExPASy TrEMBL
Match: A0A6J1DJL6 (uncharacterized protein LOC111021711 OS=Momordica charantia OX=3673 GN=LOC111021711 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.4e-12
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 0

Query: 7   NQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNV 66
           N + D    ++  + Y       +R  H  +     NSN    + + W PP   WVK NV
Sbjct: 81  NDLLDKGAINKITIKYRHPIPKLDRNFHERADIHLPNSNKAGKDVNYWAPPSPDWVKINV 140

Query: 67  DAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMAE 121
           D ACK S SRTG+G+V +++K +II A  R  +V+++PL  ET A LEG+ + +
Sbjct: 141 DTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQ 194

BLAST of MS007461 vs. ExPASy TrEMBL
Match: A0A6J1CK80 (uncharacterized protein LOC111012047 OS=Momordica charantia OX=3673 GN=LOC111012047 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 40/113 (35.40%), Postives = 56/113 (49.56%), Query Frame = 0

Query: 9   ISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDA 68
           ++D    S+WI +Y  E     R ++ +     C         + W PP  G VK NVDA
Sbjct: 51  VADVHTESDWITNYAMELLTRRRKTNEAQKNLPC--------LAIWKPPSKGTVKLNVDA 110

Query: 69  ACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMAER 122
           A      R GVG++ RD++  I+AA   S  V + PL AE  A  E +R+AER
Sbjct: 111 AFDVRNQRGGVGVLVRDDRNSILAALISSHNV-NSPLLAEICAIREAVRLAER 154

BLAST of MS007461 vs. ExPASy TrEMBL
Match: A0A3L6PIV1 (RNase H domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM18G04280 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 29/73 (39.73%), Postives = 40/73 (54.79%), Query Frame = 0

Query: 47  DQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLT 106
           +Q  +S+W PPP GWVKFNVD +  +     G+G++ RD   Q+I    R        + 
Sbjct: 83  EQERKSKWEPPPVGWVKFNVDGSFVQQSGEAGIGVIARDSSVQVILTGRRVLFRCQGAVE 142

Query: 107 AETFAFLEGIRMA 120
           AE  A LEG R+A
Sbjct: 143 AEARACLEGFRLA 155

BLAST of MS007461 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 5.7e-06
Identity = 29/75 (38.67%), Postives = 37/75 (49.33%), Query Frame = 0

Query: 48  QINES---RWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDP 107
           Q+N S   RW PPP  WVK N DA   +   R G+G V R+EK ++     R+       
Sbjct: 411 QVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSV 470

Query: 108 LTAETFAFLEGIRMA 120
           L AE    LE +R A
Sbjct: 471 LEAE----LEAMRWA 481

BLAST of MS007461 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 9.0e-04
Identity = 29/116 (25.00%), Postives = 50/116 (43.10%), Query Frame = 0

Query: 4   KAKNQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNS-NADQINESRWLPPPTGWV 63
           +A+  I DA   +EW+        ++N  +  ++ + A N     + + S+W PPP GWV
Sbjct: 166 EARKGIQDA---TEWL--------NANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWV 225

Query: 64  KFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRM 119
           K N D+   +    T  G   R+    I+       +     L AE   FL  +++
Sbjct: 226 KCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQV 270

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145060.12.6e-2150.43uncharacterized protein LOC111014578 [Momordica charantia][more]
XP_022142956.11.0e-1261.29uncharacterized protein LOC111012950 [Momordica charantia][more]
XP_022154440.11.1e-1135.96uncharacterized protein LOC111021711 [Momordica charantia][more]
XP_022141766.12.8e-0735.40uncharacterized protein LOC111012047 [Momordica charantia][more]
RLM58814.18.2e-0739.73hypothetical protein C2845_PM18G04280 [Panicum miliaceum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CTE31.3e-2150.43uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1CNR44.8e-1361.29uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A6J1DJL65.4e-1235.96uncharacterized protein LOC111021711 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1CK801.4e-0735.40uncharacterized protein LOC111012047 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A3L6PIV14.0e-0739.73RNase H domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM18G042... [more]
Match NameE-valueIdentityDescription
AT4G29090.15.7e-0638.67Ribonuclease H-like superfamily protein [more]
AT2G02650.19.0e-0425.00Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 65..119
e-value: 9.6E-5
score: 22.2
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 40..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS007461.1MS007461.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity