MS007459 (gene) Bitter gourd (TR) v1

Overview


Name	MS007459
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Glycine-rich RNA-binding protein
Location	scaffold447: 157307 .. 158300 (-)
RNA-Seq Expression	MS007459
Synteny	MS007459

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAGAGGTGGAGTATCGCTGCTTTATTGGTGGCCTTTCATGGTCAACGTCTGACAGAGGCCTGAAAGAAGCGTTTGAAAAGTTTGGCCATCTTCTCGAGGCCAAGGTATCTACTATGATGGTCTTAATTTTTTCTTGTTGTGTAATACGGTTCTTATTGGATAGATATTGCTTCCTATGTGGGGATCTTCATATTGTGTTTCTTTTGCCAAGTGACAAGGGGATGTAAATGGTGTAATGGGTTCCGCGCATCATTCTCCCCCTCTCTCTCTTATTAAAAAGAAAAATCTAAAAAGGAAAACGGATTCCTTGAATGATGATTCTTTTGTACTTGTTTCAACTTAATGGCAATTGTTTAATGTTTGATAGAAATGTGAGAAATTTAAGGCTGGTGCATGGATGATAGTGTAGGTCTCTGGTGCTAAAGGGTTTTCCATAGTCATCCGTAAGATTTTGACAATGCATCATCCATTTCACAGGTAGTTGTTGACAAGTTTTCTGGACGTTCCCGTGGTTTTGGCTTCGTCACTTTTGATGAGAAAAAAGCTATGGATGAGGCAATAAAAGCCATGAATGGAATGGATTTAGATGGCCGGAGTATTACTGTTGATAAGGCTCAGCCAAACCAAGGTTCGGGTAGAGATCATGATGGCGATCGTCCACGTGGTCGTGATCATGATCGTGATCGAAATCGAGATTTTGGCGGTGGACGTGGATCTAACAGTGGAGATTGTTTTAAATGTGGGAAGCCTGGACATTTTGCTCGGGAGTGTCCTAGTGAAGGTGGTAGAGGAGGTAGGTATGGTGGTAGGGATGACAAATATAGTAGTGGTGGTGGTGGCAGTGGTCGTTATGGTCCTGATCGAAATGGAGATCGATTTGGCGGGCGCAATAGGAGTAGTGGTGATCGAGGAGGTTCAGGAAGCGATCGACATAATCGTGACCGGTCTGGGCCATATGAGCGACGCAGTTCTTGTGGTTTTCGTTCT

mRNA sequence

ATGGCTGAAGAGGTGGAGTATCGCTGCTTTATTGGTGGCCTTTCATGGTCAACGTCTGACAGAGGCCTGAAAGAAGCGTTTGAAAAGTTTGGCCATCTTCTCGAGGCCAAGGTAGTTGTTGACAAGTTTTCTGGACGTTCCCGTGGTTTTGGCTTCGTCACTTTTGATGAGAAAAAAGCTATGGATGAGGCAATAAAAGCCATGAATGGAATGGATTTAGATGGCCGGAGTATTACTGTTGATAAGGCTCAGCCAAACCAAGGTTCGGGTAGAGATCATGATGGCGATCGTCCACGTGGTCGTGATCATGATCGTGATCGAAATCGAGATTTTGGCGGTGGACGTGGATCTAACAGTGGAGATTGTTTTAAATGTGGGAAGCCTGGACATTTTGCTCGGGAGTGTCCTAGTGAAGGTGGTAGAGGAGGTAGGTATGGTGGTAGGGATGACAAATATAGTAGTGGTGGTGGTGGCAGTGGTCGTTATGGTCCTGATCGAAATGGAGATCGATTTGGCGGGCGCAATAGGAGTAGTGGTGATCGAGGAGGTTCAGGAAGCGATCGACATAATCGTGACCGGTCTGGGCCATATGAGCGACGCAGTTCTTGTGGTTTTCGTTCT

Coding sequence (CDS)

ATGGCTGAAGAGGTGGAGTATCGCTGCTTTATTGGTGGCCTTTCATGGTCAACGTCTGACAGAGGCCTGAAAGAAGCGTTTGAAAAGTTTGGCCATCTTCTCGAGGCCAAGGTAGTTGTTGACAAGTTTTCTGGACGTTCCCGTGGTTTTGGCTTCGTCACTTTTGATGAGAAAAAAGCTATGGATGAGGCAATAAAAGCCATGAATGGAATGGATTTAGATGGCCGGAGTATTACTGTTGATAAGGCTCAGCCAAACCAAGGTTCGGGTAGAGATCATGATGGCGATCGTCCACGTGGTCGTGATCATGATCGTGATCGAAATCGAGATTTTGGCGGTGGACGTGGATCTAACAGTGGAGATTGTTTTAAATGTGGGAAGCCTGGACATTTTGCTCGGGAGTGTCCTAGTGAAGGTGGTAGAGGAGGTAGGTATGGTGGTAGGGATGACAAATATAGTAGTGGTGGTGGTGGCAGTGGTCGTTATGGTCCTGATCGAAATGGAGATCGATTTGGCGGGCGCAATAGGAGTAGTGGTGATCGAGGAGGTTCAGGAAGCGATCGACATAATCGTGACCGGTCTGGGCCATATGAGCGACGCAGTTCTTGTGGTTTTCGTTCT

Protein sequence

MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSGDCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNRSSGDRGGSGSDRHNRDRSGPYERRSSCGFRS

Homology

[Close]

BLAST of MS007459 vs. NCBI nr
Match: XP_022154392.1 (glycine-rich RNA-binding protein RZ1A [Momordica charantia] >XP_022154393.1 glycine-rich RNA-binding protein RZ1A [Momordica charantia] >XP_022154394.1 glycine-rich RNA-binding protein RZ1A [Momordica charantia] >XP_022154395.1 glycine-rich RNA-binding protein RZ1A [Momordica charantia])

HSP 1 Score: 402.9 bits (1034), Expect = 1.7e-108
Identity = 205/207 (99.03%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MAEEVEYRCFIGGLSWSTSDR LKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRSLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSG 120
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSG
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSG 120

Query: 121 DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNRSSGD 180
           DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNRSSGD
Sbjct: 121 DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNRSSGD 180

Query: 181 RGGSGSDRHNRDRSGPYERRSSCGFRS 208
           RGGSGSDRHNRDRSGPYERRSS GFRS
Sbjct: 181 RGGSGSDRHNRDRSGPYERRSSGGFRS 207

[Close]

BLAST of MS007459 vs. NCBI nr
Match: XP_008455237.1 (PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis melo] >XP_016901750.1 PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis melo])

HSP 1 Score: 377.9 bits (969), Expect = 5.7e-101
Identity = 196/212 (92.45%), Postives = 201/212 (94.81%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA+EVEYRCFIGGLSWSTSDRGLKEAFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPR-GRDHDRDRNRDFGGGRGSNS 120
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPR GRDHDRDR RDFGG RGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGGRGGRYGGRDDKY----SSGGGGSGRYGPDRNGDRFGGRN 180
           GDCFKCGKPGHFARECPSEGGRGGRYGGRDDKY      GGGGSGRYGPDRNGDRFGGRN
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGGRYGGRDDKYGGGGGGGGGGSGRYGPDRNGDRFGGRN 180

Query: 181 RSSGDRGGSGSDRHNRDRSGPYERRSSCGFRS 208
           RS+GDRGGSGSDR++RDRSGPYERR S GFRS
Sbjct: 181 RSTGDRGGSGSDRYSRDRSGPYERRGSGGFRS 212

[Close]

BLAST of MS007459 vs. NCBI nr
Match: XP_038888155.1 (glycine-rich RNA-binding protein RZ1A [Benincasa hispida])

HSP 1 Score: 377.1 bits (967), Expect = 9.8e-101
Identity = 196/210 (93.33%), Postives = 201/210 (95.71%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA+EVEYRCFIGGLSWSTSDRGLKEAFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPR-GRDHDRDRNRDFGGGRGSNS 120
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPR GRDHDRDR RD GG RGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDSGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGGRGGRYGGRDDKYS--SGGGGSGRYGPDRNGDRFGGRNRS 180
           GDCFKCGKPGHFARECPSEGGRGGRYGGRDDKYS   GGGGSGRYGPDRNGDRFGGRNRS
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSGGGGGGGSGRYGPDRNGDRFGGRNRS 180

Query: 181 SGDRGGSGSDRHNRDRSGPYERRSSCGFRS 208
           +GDRGGSGSDR++RDRSGPYERR S GFRS
Sbjct: 181 TGDRGGSGSDRYSRDRSGPYERRGSGGFRS 210

[Close]

BLAST of MS007459 vs. NCBI nr
Match: XP_004136860.1 (glycine-rich RNA-binding protein RZ1A [Cucumis sativus] >XP_011658772.1 glycine-rich RNA-binding protein RZ1A [Cucumis sativus])

HSP 1 Score: 375.6 bits (963), Expect = 2.8e-100
Identity = 197/210 (93.81%), Postives = 201/210 (95.71%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA+EVEYRCFIGGLSWSTSDRGLKEAFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPR-GRDHDRDRNRDFGGGRGSNS 120
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPR GRDHDRDR RDFGG RGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGGR-GGRYGGRDDKYS-SGGGGSGRYGPDRNGDRFGGRNRS 180
           GDCFKCGKPGHFARECPSEGGR GGRYGGRDDKYS  GGGG GRYGPDRNGDRFGGRNRS
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGGGGGGRYGPDRNGDRFGGRNRS 180

Query: 181 SGDRGGSGSDRHNRDRSGPYERRSSCGFRS 208
           SGDRGGSGSDR++RDRSGPYERR S GFRS
Sbjct: 181 SGDRGGSGSDRYSRDRSGPYERRGSGGFRS 210

[Close]

BLAST of MS007459 vs. NCBI nr
Match: XP_022988948.1 (glycine-rich RNA-binding protein RZ1A-like [Cucurbita maxima])

HSP 1 Score: 371.7 bits (953), Expect = 4.1e-99
Identity = 195/211 (92.42%), Postives = 200/211 (94.79%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MAEE EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSG 120
           MDEAIKAMNGMDLDGR+ITVDKAQPNQGSGRD+DGDRPRGRDHDRDRNRDFGGGRGSNS 
Sbjct: 61  MDEAIKAMNGMDLDGRAITVDKAQPNQGSGRDNDGDRPRGRDHDRDRNRDFGGGRGSNSR 120

Query: 121 DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSSG--GGGSGRYGPDRNGDRFGGRNRSS 180
           DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYS G  GGGSGRYGPDRNGDR GGRNR +
Sbjct: 121 DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSGGGSGGGSGRYGPDRNGDRSGGRNRDT 180

Query: 181 GDRGGSGSDRHNRDRSGPYERRS--SCGFRS 208
           GDRGGSGSDR++RDRSGPYERRS  S GFRS
Sbjct: 181 GDRGGSGSDRYSRDRSGPYERRSSGSGGFRS 211

[Close]

BLAST of MS007459 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-65
Identity = 145/250 (58.00%), Postives = 170/250 (68.00%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M+E+ EYRCFIGGL+W+TSDRGL++AFEK+GHL+EAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQ-GSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNS 120
           MDEAI AMNGMDLDGR+ITVDKAQP+Q G+GRD+DGDR R R +DRDR+R   GGRG   
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRP-SGGRG--G 120

Query: 121 GDCFKCGKPGHFARECPSEGGRGG------------------------------------ 180
           GDCFKCGKPGHFARECPSE  R G                                    
Sbjct: 121 GDCFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAKEDRYGAKD 180

Query: 181 --------RYGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNRSSGDRGGSGSDRHNRDRSG 206
                   RY  +DD+Y S  GG  RYGPDR+G+R GGR+R  G RG  G +RH+R    
Sbjct: 181 DRYSSKDDRYSSKDDRYGSRDGGGSRYGPDRSGERAGGRSRDGGSRGAPGGERHSR---A 240

[Close]

BLAST of MS007459 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.8e-28
Identity = 83/188 (44.15%), Postives = 111/188 (59.04%), Query Frame = 0


Query: 4   EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 63
           +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM +
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 64  AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSGDCF 123
           AI+ MNG DLDGRSITV++AQ ++GSG                     GGG     G  +
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-SRGSGG--------------------GGGHRGGGGGGY 124

Query: 124 KCGKPGHFARECPSEGGRGGR------YGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNRS 183
           + G  G ++    S GG GGR      Y G    YSS GGG G YG    G R GG    
Sbjct: 125 RSGGGGGYSGGGGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYG---GGRREGGGGYG 168

Query: 184 SGDRGGSG 186
            G+ GG G
Sbjct: 185 GGEGGGYG 168

[Close]

BLAST of MS007459 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-27
Identity = 84/182 (46.15%), Postives = 109/182 (59.89%), Query Frame = 0


Query: 4   EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 63
           +VEYRCF+GGL+W+T DR L+ AF ++G +L++K++ D+ +GRSRGFGFVTF ++K+M +
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64

Query: 64  AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSGDCF 123
           AI+ MNG DLDGRSITV++AQ ++GSG    G             R  GGG  S  G  +
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-SRGSGGGGGG-------------RGGGGGYRSGGGGGY 124

Query: 124 KCGKPGHFARECPSEGGRGGRYGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNRSSGDRGG 183
             G  G+        GGR G Y G    YSS GGG G YG    G R GG     G  GG
Sbjct: 125 GGGGGGY------GGGGREGGYSGGGGGYSSRGGGGGGYG--GGGRRDGGEGGGYGGSGG 164

Query: 184 SG 186
            G
Sbjct: 185 GG 164

[Close]

BLAST of MS007459 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-26
Identity = 81/194 (41.75%), Postives = 110/194 (56.70%), Query Frame = 0


Query: 2   AEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAM 61
           A +VEYRCF+GGL+W+T++  L++AF  FG ++++KV+ D+ +GRSRGFGFVTF  +++M
Sbjct: 3   AADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSM 62

Query: 62  DEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSGD 121
            +AI+ MNG +LDGR+ITV++AQ   G G                     GGG G   G 
Sbjct: 63  LDAIENMNGKELDGRNITVNQAQSRGGGGG--------------------GGGYGGGGG- 122

Query: 122 CFKCGKPGHFARECPSEGGRGGRYGGRDD---KYSSG--GGGSGRYGPDRNGDRFGGRNR 181
                  G+  RE    GG GG YGGR +    Y  G  GGG G YG    G  +GG   
Sbjct: 123 -------GYGGREGGGYGGGGGGYGGRREGGGGYGGGGYGGGGGGYGGREGGGGYGGGGG 168

Query: 182 SSGDRGGSGSDRHN 191
             G+RG SG +  N
Sbjct: 183 YGGNRGDSGGNWRN 168

[Close]

BLAST of MS007459 vs. ExPASy Swiss-Prot
Match: Q8RWN5 (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-25
Identity = 81/200 (40.50%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA +   R F+GGLS   +DR L+ AF +FG +L+ ++++++ +GRSRGFGF+TF +++A
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQG--SGRDHDGDRPRGRDHDRDRNRDFGGGRGS- 120
           MDE+I+ M+G D   R I+V++A+P  G   G  H     R   +       FGGG G  
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 ---NSGDCFKCGKPGHFARECPSE-GGRGGRYGGRDDKYSSGGGGSGRYGPDRNGDRFGG 180
                 +CFKCG+ GH+AR+CPS  GGRGG  GG   + S+ GG  GR     + DR+  
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 RNRSSGDRGGSGSDRHNRDR 194
           R R   DR    +    RDR
Sbjct: 181 RERYIDDRYDGAARYGARDR 200

[Close]

BLAST of MS007459 vs. ExPASy TrEMBL
Match: A0A6J1DLZ2 (glycine-rich RNA-binding protein RZ1A OS=Momordica charantia OX=3673 GN=LOC111021672 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 8.1e-109
Identity = 205/207 (99.03%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MAEEVEYRCFIGGLSWSTSDR LKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEVEYRCFIGGLSWSTSDRSLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSG 120
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSG
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSG 120

Query: 121 DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNRSSGD 180
           DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNRSSGD
Sbjct: 121 DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNRSSGD 180

Query: 181 RGGSGSDRHNRDRSGPYERRSSCGFRS 208
           RGGSGSDRHNRDRSGPYERRSS GFRS
Sbjct: 181 RGGSGSDRHNRDRSGPYERRSSGGFRS 207

[Close]

BLAST of MS007459 vs. ExPASy TrEMBL
Match: A0A1S3C164 (glycine-rich RNA-binding protein RZ1A OS=Cucumis melo OX=3656 GN=LOC103495449 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.8e-101
Identity = 196/212 (92.45%), Postives = 201/212 (94.81%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA+EVEYRCFIGGLSWSTSDRGLKEAFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPR-GRDHDRDRNRDFGGGRGSNS 120
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPR GRDHDRDR RDFGG RGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGGRGGRYGGRDDKY----SSGGGGSGRYGPDRNGDRFGGRN 180
           GDCFKCGKPGHFARECPSEGGRGGRYGGRDDKY      GGGGSGRYGPDRNGDRFGGRN
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGGRYGGRDDKYGGGGGGGGGGSGRYGPDRNGDRFGGRN 180

Query: 181 RSSGDRGGSGSDRHNRDRSGPYERRSSCGFRS 208
           RS+GDRGGSGSDR++RDRSGPYERR S GFRS
Sbjct: 181 RSTGDRGGSGSDRYSRDRSGPYERRGSGGFRS 212

[Close]

BLAST of MS007459 vs. ExPASy TrEMBL
Match: A0A0A0K5W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G058610 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100
Identity = 197/210 (93.81%), Postives = 201/210 (95.71%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA+EVEYRCFIGGLSWSTSDRGLKEAFEKFGHL+EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPR-GRDHDRDRNRDFGGGRGSNS 120
           MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPR GRDHDRDR RDFGG RGSNS
Sbjct: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGGRDHDRDRGRDFGGARGSNS 120

Query: 121 GDCFKCGKPGHFARECPSEGGR-GGRYGGRDDKYS-SGGGGSGRYGPDRNGDRFGGRNRS 180
           GDCFKCGKPGHFARECPSEGGR GGRYGGRDDKYS  GGGG GRYGPDRNGDRFGGRNRS
Sbjct: 121 GDCFKCGKPGHFARECPSEGGRGGGRYGGRDDKYSGGGGGGGGRYGPDRNGDRFGGRNRS 180

Query: 181 SGDRGGSGSDRHNRDRSGPYERRSSCGFRS 208
           SGDRGGSGSDR++RDRSGPYERR S GFRS
Sbjct: 181 SGDRGGSGSDRYSRDRSGPYERRGSGGFRS 210

[Close]

BLAST of MS007459 vs. ExPASy TrEMBL
Match: A0A6J1JNT9 (glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita maxima OX=3661 GN=LOC111486153 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.0e-99
Identity = 195/211 (92.42%), Postives = 200/211 (94.79%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MAEE EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSG 120
           MDEAIKAMNGMDLDGR+ITVDKAQPNQGSGRD+DGDRPRGRDHDRDRNRDFGGGRGSNS 
Sbjct: 61  MDEAIKAMNGMDLDGRAITVDKAQPNQGSGRDNDGDRPRGRDHDRDRNRDFGGGRGSNSR 120

Query: 121 DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSSG--GGGSGRYGPDRNGDRFGGRNRSS 180
           DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYS G  GGGSGRYGPDRNGDR GGRNR +
Sbjct: 121 DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSGGGSGGGSGRYGPDRNGDRSGGRNRDT 180

Query: 181 GDRGGSGSDRHNRDRSGPYERRS--SCGFRS 208
           GDRGGSGSDR++RDRSGPYERRS  S GFRS
Sbjct: 181 GDRGGSGSDRYSRDRSGPYERRSSGSGGFRS 211

[Close]

BLAST of MS007459 vs. ExPASy TrEMBL
Match: A0A6J1EI50 (glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita moschata OX=3662 GN=LOC111434572 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.9e-98
Identity = 193/210 (91.90%), Postives = 200/210 (95.24%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MAEE EYRCFIGGLSWSTSDRGLKEAFEKFGHL EAKVVVDKFSGRSRGFGFVTFDEKKA
Sbjct: 1   MAEEGEYRCFIGGLSWSTSDRGLKEAFEKFGHLQEAKVVVDKFSGRSRGFGFVTFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSG 120
           MDEAIKAMNGMDLDGR+ITVDKAQPNQGSGRD+DGDRPRGRD++RDRNRDFGGGRGSNS 
Sbjct: 61  MDEAIKAMNGMDLDGRAITVDKAQPNQGSGRDNDGDRPRGRDNERDRNRDFGGGRGSNSR 120

Query: 121 DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYS-SGGGGSGRYGPDRNGDRFGGRNRSSG 180
           DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYS  GGGGSGRYGPDRNGDR GGRNR +G
Sbjct: 121 DCFKCGKPGHFARECPSEGGRGGRYGGRDDKYSGGGGGGSGRYGPDRNGDRSGGRNRDTG 180

Query: 181 DRGGSGSDRHNRDRSGPYERRS--SCGFRS 208
           DRGGSGSDR++RDRSGPYERRS  S GFRS
Sbjct: 181 DRGGSGSDRYSRDRSGPYERRSSGSGGFRS 210

[Close]

BLAST of MS007459 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 250.8 bits (639), Expect = 9.8e-67
Identity = 145/250 (58.00%), Postives = 170/250 (68.00%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           M+E+ EYRCFIGGL+W+TSDRGL++AFEK+GHL+EAKVV+DKFSGRSRGFGF+TFDEKKA
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQ-GSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNS 120
           MDEAI AMNGMDLDGR+ITVDKAQP+Q G+GRD+DGDR R R +DRDR+R   GGRG   
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRP-SGGRG--G 120

Query: 121 GDCFKCGKPGHFARECPSEGGRGG------------------------------------ 180
           GDCFKCGKPGHFARECPSE  R G                                    
Sbjct: 121 GDCFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAKEDRYGAKD 180

Query: 181 --------RYGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNRSSGDRGGSGSDRHNRDRSG 206
                   RY  +DD+Y S  GG  RYGPDR+G+R GGR+R  G RG  G +RH+R    
Sbjct: 181 DRYSSKDDRYSSKDDRYGSRDGGGSRYGPDRSGERAGGRSRDGGSRGAPGGERHSR---A 240

[Close]

BLAST of MS007459 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-29
Identity = 83/188 (44.15%), Postives = 111/188 (59.04%), Query Frame = 0


Query: 4   EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 63
           +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM +
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 64  AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSGDCF 123
           AI+ MNG DLDGRSITV++AQ ++GSG                     GGG     G  +
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-SRGSGG--------------------GGGHRGGGGGGY 124

Query: 124 KCGKPGHFARECPSEGGRGGR------YGGRDDKYSSGGGGSGRYGPDRNGDRFGGRNRS 183
           + G  G ++    S GG GGR      Y G    YSS GGG G YG    G R GG    
Sbjct: 125 RSGGGGGYSGGGGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYG---GGRREGGGGYG 168

Query: 184 SGDRGGSG 186
            G+ GG G
Sbjct: 185 GGEGGGYG 168

[Close]

BLAST of MS007459 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 119.8 bits (299), Expect = 2.6e-27
Identity = 78/167 (46.71%), Postives = 105/167 (62.87%), Query Frame = 0


Query: 4   EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 63
           +VEYRCF+GGL+W+T DR L+ AF ++G ++++K++ D+ +GRSRGFGFVTF ++KAM +
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 64  AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSGDCF 123
           AI+ MNG DLDGRSITV++AQ ++GSG    G   RG          +GGG G   G   
Sbjct: 65  AIEGMNGQDLDGRSITVNEAQ-SRGSG---GGGGHRG-------GGSYGGGGGRREGGGG 124

Query: 124 KCGKPGHFARECPSEGGRGGRYGG--RDDKYSSGGGGSGRYGPDRNG 169
             G  G ++    S GG GG YGG  R+     GGG  G YG    G
Sbjct: 125 YSGGGGGYS----SRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGG 156

[Close]

BLAST of MS007459 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-27
Identity = 81/200 (40.50%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 1   MAEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
           MA +   R F+GGLS   +DR L+ AF +FG +L+ ++++++ +GRSRGFGF+TF +++A
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDEAIKAMNGMDLDGRSITVDKAQPNQG--SGRDHDGDRPRGRDHDRDRNRDFGGGRGS- 120
           MDE+I+ M+G D   R I+V++A+P  G   G  H     R   +       FGGG G  
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 ---NSGDCFKCGKPGHFARECPSE-GGRGGRYGGRDDKYSSGGGGSGRYGPDRNGDRFGG 180
                 +CFKCG+ GH+AR+CPS  GGRGG  GG   + S+ GG  GR     + DR+  
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 RNRSSGDRGGSGSDRHNRDR 194
           R R   DR    +    RDR
Sbjct: 181 RERYIDDRYDGAARYGARDR 200

[Close]

BLAST of MS007459 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-26
Identity = 84/185 (45.41%), Postives = 111/185 (60.00%), Query Frame = 0


Query: 4   EVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMDE 63
           EVEYRCF+GGL+W+T+D  L+  F +FG ++++K++ D+ SGRSRGFGFVTF ++KAM +
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 64  AIKAMNGMDLDGRSITVDKAQPNQGSGRDHDGDRPRGRDHDRDRNRDFGGGRGSNSGDCF 123
           AI+ MNG +LDGR ITV++AQ ++GSG    G   RG           GGG  S  G  +
Sbjct: 63  AIEEMNGKELDGRVITVNEAQ-SRGSG---GGGGGRGGS---------GGGYRSGGGGGY 122

Query: 124 KCGKPGHFARECPSEGGRGGRYGGRDDKYSSGGGGSGR---YGPDRNGDRFGGRNRSSGD 183
             G  G ++      GG GG Y  R   Y SGGGG GR    G  R G  +GG +  S  
Sbjct: 123 SGGGGGGYS------GGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYG 168

Query: 184 RGGSG 186
            GG G
Sbjct: 183 GGGGG 168

The following BLAST results are available for this feature:

BLAST of MS007459 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154392.1	1.7e-108	99.03	glycine-rich RNA-binding protein RZ1A [Momordica charantia] >XP_022154393.1 glyc...	[more]
XP_008455237.1	5.7e-101	92.45	PREDICTED: glycine-rich RNA-binding protein RZ1A [Cucumis melo] >XP_016901750.1 ...	[more]
XP_038888155.1	9.8e-101	93.33	glycine-rich RNA-binding protein RZ1A [Benincasa hispida]	[more]
XP_004136860.1	2.8e-100	93.81	glycine-rich RNA-binding protein RZ1A [Cucumis sativus] >XP_011658772.1 glycine-...	[more]
XP_022988948.1	4.1e-99	92.42	glycine-rich RNA-binding protein RZ1A-like [Cucurbita maxima]	[more]

BLAST of MS007459 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIN3	1.4e-65	58.00	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
Q03250	8.8e-28	44.15	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
P49310	3.3e-27	46.15	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q99070	2.8e-26	41.75	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
Q8RWN5	1.1e-25	40.50	Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE...	[more]

BLAST of MS007459 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLZ2	8.1e-109	99.03	glycine-rich RNA-binding protein RZ1A OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A1S3C164	2.8e-101	92.45	glycine-rich RNA-binding protein RZ1A OS=Cucumis melo OX=3656 GN=LOC103495449 PE...	[more]
A0A0A0K5W4	1.4e-100	93.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G058610 PE=4 SV=1	[more]
A0A6J1JNT9	2.0e-99	92.42	glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1EI50	2.9e-98	91.90	glycine-rich RNA-binding protein RZ1A-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of MS007459 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26420.1	9.8e-67	58.00	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT2G21660.1	6.2e-29	44.15	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.2	2.6e-27	46.71	cold, circadian rhythm, and rna binding 2	[more]
AT5G04280.1	7.6e-27	40.50	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT4G39260.1	1.3e-26	45.41	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 121..137 e-value: 3.5E-6 score: 36.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 122..137 e-value: 6.9E-8 score: 32.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 122..137 score: 11.564723
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..81 e-value: 7.1E-27 score: 105.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..78 e-value: 4.0E-20 score: 71.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..85 score: 19.740658
None	No IPR available	GENE3D	4.10.60.10		coord: 118..183 e-value: 2.0E-8 score: 36.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..199
None	No IPR available	PANTHER	PTHR15241:SF289	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	coord: 1..177
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..177
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..117 e-value: 2.5E-31 score: 110.7
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 7..115
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 104..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007459.1	MS007459.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding