MS007328 (gene) Bitter gourd (TR) v1

Overview


Name	MS007328
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold25: 2422210 .. 2422437 (-)
RNA-Seq Expression	MS007328
Synteny	MS007328

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCGTGATGATCTTAAACAAAATCAGAGGAAAACTGCATATGAAAGTGGCTCTCAGACCCTGACGCAGGCAATTTTGGGCAAAAGTAGGAAAGAAAGAGGACATAAAATGCCCGAAATGCATCAGAAAAGGGGGCTTACGATATACAGCTTCTTCAAAAACCTTCTCAATCTTCATTGCTTGAGCAGACTTGACTTGTACAAGCAGAAAAGCAAGGCAGTTCCTCAT

mRNA sequence

AAGCGTGATGATCTTAAACAAAATCAGAGGAAAACTGCATATGAAAGTGGCTCTCAGACCCTGACGCAGGCAATTTTGGGCAAAAGTAGGAAAGAAAGAGGACATAAAATGCCCGAAATGCATCAGAAAAGGGGGCTTACGATATACAGCTTCTTCAAAAACCTTCTCAATCTTCATTGCTTGAGCAGACTTGACTTGTACAAGCAGAAAAGCAAGGCAGTTCCTCAT

Coding sequence (CDS)

AAGCGTGATGATCTTAAACAAAATCAGAGGAAAACTGCATATGAAAGTGGCTCTCAGACCCTGACGCAGGCAATTTTGGGCAAAAGTAGGAAAGAAAGAGGACATAAAATGCCCGAAATGCATCAGAAAAGGGGGCTTACGATATACAGCTTCTTCAAAAACCTTCTCAATCTTCATTGCTTGAGCAGACTTGACTTGTACAAGCAGAAAAGCAAGGCAGTTCCTCAT

Protein sequence

KRDDLKQNQRKTAYESGSQTLTQAILGKSRKERGHKMPEMHQKRGLTIYSFFKNLLNLHCLSRLDLYKQKSKAVPH

Homology

[Close]

BLAST of MS007328 vs. NCBI nr
Match: ABR67415.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1   KRDDLKQNQRKTAYESGSQTLTQAILGKSRKERGHKMPEMHQKRGLTIYSFFKNLLNLHC 60
           KRDDL +NQ  T YESGSQTL QAILGK RK+R HKMPEMH  +G        N++ +H 
Sbjct: 44  KRDDLNENQTITVYESGSQTLRQAILGKYRKKRRHKMPEMHHHQGQIF-----NVIWVHL 103

Query: 61  LSRLDLYKQKSKAVPH 77
            + +  +K + K++ H
Sbjct: 104 GTIIQAFKSQWKSIRH 114

[Close]

BLAST of MS007328 vs. ExPASy TrEMBL
Match: A6YTD2 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 1   KRDDLKQNQRKTAYESGSQTLTQAILGKSRKERGHKMPEMHQKRGLTIYSFFKNLLNLHC 60
           KRDDL +NQ  T YESGSQTL QAILGK RK+R HKMPEMH  +G        N++ +H 
Sbjct: 44  KRDDLNENQTITVYESGSQTLRQAILGKYRKKRRHKMPEMHHHQGQIF-----NVIWVHL 103

Query: 61  LSRLDLYKQKSKAVPH 77
            + +  +K + K++ H
Sbjct: 104 GTIIQAFKSQWKSIRH 114

The following BLAST results are available for this feature:

BLAST of MS007328 vs. NCBI nr


Match Name	E-value	Identity	Description
ABR67415.1	9.4e-09	50.00	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of MS007328 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS007328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A6YTD2	4.5e-09	50.00	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of MS007328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007328.1	MS007328.1	mRNA