MS007304 (gene) Bitter gourd (TR) v1

Overview


Name	MS007304
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Histone H2A
Location	scaffold25: 2137860 .. 2138389 (+)
RNA-Seq Expression	MS007304
Synteny	MS007304

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGAGTTATCAATGGAGGGAACGAAGGGCGCCGGAGGAAGAAAAGGAGGCGACAGAACTAAGGTCTCGAAGTCTGTCAAGGCCGGACTCCAATTCCCCGTCGGAAGAATCGGACGATACCTCAAGAAAGGACGTTACGCCAAGCGTACCGCCGCCGGTGCTCCGATCTACCTCGCTGCGGTGCTCGAATACCTCGCCGCTGAGGTAATCACACAATAGAGACGAAATTCATTTTCCTTCGCTTTCTCAGTATCCAAATGGGAATCGATTTCTCAAACTTATGTTGTGTAATGTAGGTTTTGGAATTGGCGGGGAATGCAGCGCGCGACAACAAGAAGAACAGGATAAACCCTAGGCATGTTCTTCTGGCGGTCCGGAACGACGAGGAGCTAGGAAAATTGCTTCAAGGAGTAACCATTGCTAGTGGTGGTGTTCTTCCGAATATTAATCCGGTTCTGCTTCCGAAGAAGACATCGTCGAATTCCACTCCTTCGACTGCTGAAAAGGCTCCGAAATCGCCGAAAAAGTTG

mRNA sequence

CGAGAGTTATCAATGGAGGGAACGAAGGGCGCCGGAGGAAGAAAAGGAGGCGACAGAACTAAGGTCTCGAAGTCTGTCAAGGCCGGACTCCAATTCCCCGTCGGAAGAATCGGACGATACCTCAAGAAAGGACGTTACGCCAAGCGTACCGCCGCCGGTGCTCCGATCTACCTCGCTGCGGTGCTCGAATACCTCGCCGCTGAGGTTTTGGAATTGGCGGGGAATGCAGCGCGCGACAACAAGAAGAACAGGATAAACCCTAGGCATGTTCTTCTGGCGGTCCGGAACGACGAGGAGCTAGGAAAATTGCTTCAAGGAGTAACCATTGCTAGTGGTGGTGTTCTTCCGAATATTAATCCGGTTCTGCTTCCGAAGAAGACATCGTCGAATTCCACTCCTTCGACTGCTGAAAAGGCTCCGAAATCGCCGAAAAAGTTG

Coding sequence (CDS)

CGAGAGTTATCAATGGAGGGAACGAAGGGCGCCGGAGGAAGAAAAGGAGGCGACAGAACTAAGGTCTCGAAGTCTGTCAAGGCCGGACTCCAATTCCCCGTCGGAAGAATCGGACGATACCTCAAGAAAGGACGTTACGCCAAGCGTACCGCCGCCGGTGCTCCGATCTACCTCGCTGCGGTGCTCGAATACCTCGCCGCTGAGGTTTTGGAATTGGCGGGGAATGCAGCGCGCGACAACAAGAAGAACAGGATAAACCCTAGGCATGTTCTTCTGGCGGTCCGGAACGACGAGGAGCTAGGAAAATTGCTTCAAGGAGTAACCATTGCTAGTGGTGGTGTTCTTCCGAATATTAATCCGGTTCTGCTTCCGAAGAAGACATCGTCGAATTCCACTCCTTCGACTGCTGAAAAGGCTCCGAAATCGCCGAAAAAGTTG

Protein sequence

RELSMEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKTSSNSTPSTAEKAPKSPKKL

Homology

[Close]

BLAST of MS007304 vs. NCBI nr
Match: XP_022150784.1 (probable histone H2A.5 [Momordica charantia])

HSP 1 Score: 268.5 bits (685), Expect = 3.5e-68
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 5   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 64
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 65  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 124
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 125 KKTSSNSTPSTAEKAPKSPKKL 147
           KKTSSNSTPSTAEKAPKSPKKL
Sbjct: 121 KKTSSNSTPSTAEKAPKSPKKL 142

[Close]

BLAST of MS007304 vs. NCBI nr
Match: XP_008454292.1 (PREDICTED: probable histone H2A.5 [Cucumis melo] >KAA0048024.1 putative histone H2A.5 [Cucumis melo var. makuwa] >TYK13795.1 putative histone H2A.5 [Cucumis melo var. makuwa])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 5   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 64
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 65  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 124
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 125 KKTSSNSTPSTAEKAPKSPKK 146
           KKT+SNSTP TAEKA KSPKK
Sbjct: 121 KKTASNSTP-TAEKAQKSPKK 140

[Close]

BLAST of MS007304 vs. NCBI nr
Match: XP_004144786.1 (probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_021264 [Cucumis sativus])

HSP 1 Score: 254.6 bits (649), Expect = 5.2e-64
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 5   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 64
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYA+RTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLEY 60

Query: 65  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 124
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 125 KKTSSNSTPSTAEKAPKSPKK 146
           KKT+SNSTP TAEKA KSPKK
Sbjct: 121 KKTASNSTP-TAEKAQKSPKK 140

[Close]

BLAST of MS007304 vs. NCBI nr
Match: XP_038890710.1 (probable histone H2A.5 [Benincasa hispida])

HSP 1 Score: 254.6 bits (649), Expect = 5.2e-64
Identity = 136/141 (96.45%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 5   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 64
           MEGTKGAGGRKGGDRTK+SKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKISKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 65  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 124
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 125 KKTSSNSTPSTAEKAPKSPKK 146
           KKT+SNSTP TAEKA KSPKK
Sbjct: 121 KKTASNSTP-TAEKAQKSPKK 140

[Close]

BLAST of MS007304 vs. NCBI nr
Match: XP_022999035.1 (histone H2A.1-like [Cucurbita maxima])

HSP 1 Score: 240.4 bits (612), Expect = 1.0e-59
Identity = 129/141 (91.49%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 5   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 64
           MEGTKGAGGRKGG+R+K+SKSVKAGLQFPV RIGRYLKKGRYA+RT +GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSVKAGLQFPVARIGRYLKKGRYAQRTGSGAPIYLAAVLEY 60

Query: 65  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 124
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 125 KKTSSNSTPSTAEKAPKSPKK 146
           KK+SSNST S AEKA KSPKK
Sbjct: 121 KKSSSNST-SPAEKAQKSPKK 140

[Close]

BLAST of MS007304 vs. ExPASy Swiss-Prot
Match: Q94F49 (Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.0e-54
Identity = 113/139 (81.29%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 8   TKGAGGRKGGDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 67
           T+GAGGRKGGDR K VSKSVKAGLQFPVGRI RYLKKGRYA R  +GAP+YLAAVLEYLA
Sbjct: 11  TRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

Query: 68  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 127
           AEVLELAGNAARDNKKNRINPRH+ LA+RNDEELG+LL GVTIASGGVLPNINPVLLPKK
Sbjct: 71  AEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130

Query: 128 TSSNSTPSTAEKAPKSPKK 146
           ++++S+ +    A KSPKK
Sbjct: 131 STASSSQAEKASATKSPKK 149

[Close]

BLAST of MS007304 vs. ExPASy Swiss-Prot
Match: P25469 (Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-53
Identity = 116/139 (83.45%), Postives = 123/139 (88.49%), Query Frame = 0


Query: 8   TKGAGGRKGGDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 67
           TKGAGGRKGG R K V+KS+KAGLQFPVGRIGRYLKKGRYA+R  +GAPIYLAAVLEYLA
Sbjct: 7   TKGAGGRKGGPRKKSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLA 66

Query: 68  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 127
           AEVLELAGNAARDNKK+RI PRHVLLAVRNDEELGKLL GVTIASGGVLPNINPVLLPKK
Sbjct: 67  AEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKK 126

Query: 128 TSSNSTPSTAEKAPKSPKK 146
           ++     S   KA KSPKK
Sbjct: 127 SAVAEEKSPKAKAGKSPKK 145

[Close]

BLAST of MS007304 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 8.0e-52
Identity = 114/151 (75.50%), Postives = 125/151 (82.78%), Query Frame = 0


Query: 2   ELSMEGTKGAGGRKGGDRTK--VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLA 61
           + S +  KGAGGRKGG   K  V++S++AGLQFPVGRIGRYLKKGRYA+R   GAP+YLA
Sbjct: 2   DASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 61

Query: 62  AVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIN 121
           AVLEYLAAEVLELAGNAARDNKKNRI PRHVLLAVRNDEELGKLL GVTIA GGVLPNIN
Sbjct: 62  AVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNIN 121

Query: 122 PVLLPKKTSSNSTPSTAEKAP-----KSPKK 146
           PVLLPKKT  ++T S   K+P     KSPKK
Sbjct: 122 PVLLPKKTERSNTVSKEPKSPKPKAGKSPKK 152

[Close]

BLAST of MS007304 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.8e-51
Identity = 112/146 (76.71%), Postives = 123/146 (84.25%), Query Frame = 0


Query: 2   ELSMEGTKGAGGRKGGDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAA 61
           + S +  KGAGGRKGG R K V++S +AGLQFPVGRIGRYLKKGRYA+R   GAP+YLAA
Sbjct: 2   DASTKTKKGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 61

Query: 62  VLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINP 121
           VLEYLAAEVLELAGNAARDNKKNRI PRHVLLAVRNDEELGKLL GVTIA GGVLPNINP
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 121

Query: 122 VLLPKKT-SSNSTPSTAEKAPKSPKK 146
           +LLPKK   + +T  +  KA KSPKK
Sbjct: 122 ILLPKKNEKAATTTKSPSKATKSPKK 147

[Close]

BLAST of MS007304 vs. ExPASy Swiss-Prot
Match: P25470 (Histone H2A.1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.8e-51
Identity = 111/148 (75.00%), Postives = 126/148 (85.14%), Query Frame = 0


Query: 2   ELSMEGTKGAGGRKGGDRTK--VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLA 61
           + S +  KGAGGRKGG   K  V++SV+AGLQFPVGR+GR+LKKGRYA+R   GAP+YLA
Sbjct: 2   DASTKTKKGAGGRKGGGPRKKSVTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYLA 61

Query: 62  AVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIN 121
           AVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLAVRNDEELGKLL GVTIA GGVLPNIN
Sbjct: 62  AVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNIN 121

Query: 122 PVLLPKK--TSSNSTPSTAEKAPKSPKK 146
           PVLLPK+   ++ STP +  KA KSPKK
Sbjct: 122 PVLLPKRKENAAASTPKSPSKAKKSPKK 149

[Close]

BLAST of MS007304 vs. ExPASy TrEMBL
Match: A0A6J1DB39 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018847 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 5   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 64
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 65  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 124
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 125 KKTSSNSTPSTAEKAPKSPKKL 147
           KKTSSNSTPSTAEKAPKSPKKL
Sbjct: 121 KKTSSNSTPSTAEKAPKSPKKL 142

[Close]

BLAST of MS007304 vs. ExPASy TrEMBL
Match: A0A5A7TYC1 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00570 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.6e-65
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 5   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 64
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 65  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 124
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 125 KKTSSNSTPSTAEKAPKSPKK 146
           KKT+SNSTP TAEKA KSPKK
Sbjct: 121 KKTASNSTP-TAEKAQKSPKK 140

[Close]

BLAST of MS007304 vs. ExPASy TrEMBL
Match: A0A1S3BZ15 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.6e-65
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 5   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 64
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 65  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 124
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 125 KKTSSNSTPSTAEKAPKSPKK 146
           KKT+SNSTP TAEKA KSPKK
Sbjct: 121 KKTASNSTP-TAEKAQKSPKK 140

[Close]

BLAST of MS007304 vs. ExPASy TrEMBL
Match: A0A0A0LLV9 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.5e-64
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 5   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 64
           MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYA+RTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLEY 60

Query: 65  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 124
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 125 KKTSSNSTPSTAEKAPKSPKK 146
           KKT+SNSTP TAEKA KSPKK
Sbjct: 121 KKTASNSTP-TAEKAQKSPKK 140

[Close]

BLAST of MS007304 vs. ExPASy TrEMBL
Match: A0A6J1KE66 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111493546 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.9e-60
Identity = 129/141 (91.49%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 5   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 64
           MEGTKGAGGRKGG+R+K+SKSVKAGLQFPV RIGRYLKKGRYA+RT +GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSVKAGLQFPVARIGRYLKKGRYAQRTGSGAPIYLAAVLEY 60

Query: 65  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 124
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 125 KKTSSNSTPSTAEKAPKSPKK 146
           KK+SSNST S AEKA KSPKK
Sbjct: 121 KKSSSNST-SPAEKAQKSPKK 140

[Close]

BLAST of MS007304 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 211.8 bits (538), Expect = 3.6e-55
Identity = 113/139 (81.29%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 8   TKGAGGRKGGDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 67
           T+GAGGRKGGDR K VSKSVKAGLQFPVGRI RYLKKGRYA R  +GAP+YLAAVLEYLA
Sbjct: 11  TRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

Query: 68  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 127
           AEVLELAGNAARDNKKNRINPRH+ LA+RNDEELG+LL GVTIASGGVLPNINPVLLPKK
Sbjct: 71  AEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130

Query: 128 TSSNSTPSTAEKAPKSPKK 146
           ++++S+ +    A KSPKK
Sbjct: 131 STASSSQAEKASATKSPKK 149

[Close]

BLAST of MS007304 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 198.7 bits (504), Expect = 3.1e-51
Identity = 110/144 (76.39%), Postives = 120/144 (83.33%), Query Frame = 0


Query: 9   KGAGGRKGGDRTK---VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYL 68
           KGA GR+ G   K   VS+SVK+GLQFPVGRIGRYLKKGRY+KR   GAP+YLAAVLEYL
Sbjct: 9   KGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYL 68

Query: 69  AAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPK 128
           AAEVLELAGNAARDNKKNRI PRHVLLAVRNDEELG LL+GVTIA GGVLPNINP+LLPK
Sbjct: 69  AAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPK 128

Query: 129 KT----SSNSTPSTAEKAPKSPKK 146
           K+    S+  TP +  KA KSPKK
Sbjct: 129 KSEKAASTTKTPKSPSKATKSPKK 152

[Close]

BLAST of MS007304 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 185.3 bits (469), Expect = 3.6e-47
Identity = 105/141 (74.47%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 9   KGAGGRK--GGDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYL 68
           K  GGRK  G  +TK VSKS+KAGLQFPVGRI R+LKKGRYA+R   GAP+Y+AAVLEYL
Sbjct: 9   KAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYL 68

Query: 69  AAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPK 128
           AAEVLELAGNAARDNKK+RI PRH+LLA+RNDEELGKLL GVTIA GGVLPNIN VLLPK
Sbjct: 69  AAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPK 128

Query: 129 KTSSNSTPSTAEKAP-KSPKK 146
           K+++      A K+P KSPKK
Sbjct: 129 KSATKPAEEKATKSPVKSPKK 149

[Close]

BLAST of MS007304 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 185.3 bits (469), Expect = 3.6e-47
Identity = 110/168 (65.48%), Postives = 120/168 (71.43%), Query Frame = 0


Query: 9   KGAGGRKGGDRTK---VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYL 68
           KGA GR+ G   K   VS+SVK+GLQFPVGRIGRYLKKGRY+KR   GAP+YLAAVLEYL
Sbjct: 9   KGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYL 68

Query: 69  AAE------------------------VLELAGNAARDNKKNRINPRHVLLAVRNDEELG 128
           AAE                        VLELAGNAARDNKKNRI PRHVLLAVRNDEELG
Sbjct: 69  AAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG 128

Query: 129 KLLQGVTIASGGVLPNINPVLLPKKT----SSNSTPSTAEKAPKSPKK 146
            LL+GVTIA GGVLPNINP+LLPKK+    S+  TP +  KA KSPKK
Sbjct: 129 TLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKK 176

[Close]

BLAST of MS007304 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 164.1 bits (414), Expect = 8.5e-41
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 16  GGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELAGN 75
           G  +   ++S KAGLQFPVGRI R+LKKG+YA+R  AGAP+YLAAVLEYLAAEVLELAGN
Sbjct: 11  GSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 76  AARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKTSSNSTPST 135
           AARDNKK RI PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKKT + S PS 
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGA-SKPSA 130

Query: 136 AE 138
            +
Sbjct: 131 ED 131

The following BLAST results are available for this feature:

BLAST of MS007304 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150784.1	3.5e-68	100.00	probable histone H2A.5 [Momordica charantia]	[more]
XP_008454292.1	1.8e-64	97.87	PREDICTED: probable histone H2A.5 [Cucumis melo] >KAA0048024.1 putative histone ...	[more]
XP_004144786.1	5.2e-64	97.16	probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_02...	[more]
XP_038890710.1	5.2e-64	96.45	probable histone H2A.5 [Benincasa hispida]	[more]
XP_022999035.1	1.0e-59	91.49	histone H2A.1-like [Cucurbita maxima]	[more]

BLAST of MS007304 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94F49	5.0e-54	81.29	Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1	[more]
P25469	1.5e-53	83.45	Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
Q2HU65	8.0e-52	75.50	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
Q2HU68	1.8e-51	76.71	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]
P25470	1.8e-51	75.00	Histone H2A.1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of MS007304 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DB39	1.7e-68	100.00	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018847 PE=3 SV=1	[more]
A0A5A7TYC1	8.6e-65	97.87	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00570 PE...	[more]
A0A1S3BZ15	8.6e-65	97.87	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1	[more]
A0A0A0LLV9	2.5e-64	97.16	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1	[more]
A0A6J1KE66	4.9e-60	91.49	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111493546 PE=3 SV=1	[more]

BLAST of MS007304 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27670.1	3.6e-55	81.29	histone H2A 7	[more]
AT5G02560.1	3.1e-51	76.39	histone H2A 12	[more]
AT5G59870.1	3.6e-47	74.47	histone H2A 6	[more]
AT5G02560.2	3.6e-47	65.48	histone H2A 12	[more]
AT1G51060.1	8.5e-41	71.31	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 106..124 score: 76.19 coord: 49..64 score: 73.81 coord: 20..42 score: 62.61 coord: 78..92 score: 70.35 coord: 64..77 score: 89.46
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 9..129 e-value: 2.2E-74 score: 263.1
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 11..126 e-value: 4.35652E-64 score: 189.468
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 98..131 e-value: 1.3E-18 score: 66.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 6..136 e-value: 7.2E-60 score: 202.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 13..130
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 18..95 e-value: 3.6E-12 score: 46.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..146
None	No IPR available	PANTHER	PTHR23430:SF238	HISTONE H2A	coord: 8..133
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 8..133
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 28..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007304.1	MS007304.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity