MS007284 (gene) Bitter gourd (TR) v1

Overview
NameMS007284
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibulose bisphosphate carboxylase large chain
Locationscaffold25: 1992624 .. 1992870 (+)
RNA-Seq ExpressionMS007284
SyntenyMS007284
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCGAAAGGATCTCGAAGACCCACCAAAGTACGAAAGCTAGAATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACTGCATGGAGAAGCTCACACTAACCCGTCAATTTTGGATCCAATTCGAAATTTTTCTTGGGAGGTATGGGGAAGGAATTGAAATGTAATAATATCGATTCATACAGATACAGAAGAAAAGGTTCTCTGTTGATTCAAACACTGTACCCGCGAGACAGGGATAGA

mRNA sequence

TCATCGAAAGGATCTCGAAGACCCACCAAAGTACGAAAGCTAGAATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACTGCATGGAGAAGCTCACACTAACCCGTCAATTTTGGATCCAATTCGAAATTTTGGGAGGTATGGGGAAGGAATTGAAATGTAATAATATCGATTCATACAGATACAGAAGAAAAGGTTCTCTGTTGATTCAAACACTGTACCCGCGAGACAGGGATAGA

Coding sequence (CDS)

TCATCGAAAGGATCTCGAAGACCCACCAAAGTACGAAAGCTAGAATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACTGCATGGAGAAGCTCACACTAACCCGTCAATTTTGGATCCAATTCGAAATTTTGGGAGGTATGGGGAAGGAATTGAAATGTAATAATATCGATTCATACAGATACAGAAGAAAAGGTTCTCTGTTGATTCAAACACTGTACCCGCGAGACAGGGATAGA

Protein sequence

SSKGSRRPTKVRKLESFRKWIPIRRVHNCMEKLTLTRQFWIQFEILGGMGKELKCNNIDSYRYRRKGSLLIQTLYPRDRDR
Homology
[Close]
BLAST of MS007284 vs. NCBI nr
Match: PPR83387.1 (hypothetical protein GOBAR_AA37329 [Gossypium barbadense])

HSP 1 Score: 105.1 bits (261), Expect = 2.8e-19
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1   SSKGSRRPTKVRKLESFRKWIPIRRVHNCMEKLTLTRQFWIQFEI-LGGMGKELKCNNID 60
           SSKGSRR TK RK  SFRKWIPIRRVHN M+KLTLTRQFWIQF I LGG+ KEL+CNNID
Sbjct: 304 SSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGGISKELECNNID 363

Query: 61  SYRYRR 66
           SYR +R
Sbjct: 364 SYRRKR 369

[Close]
BLAST of MS007284 vs. NCBI nr
Match: TYG79516.1 (hypothetical protein ES288_D02G144500v1, partial [Gossypium darwinii])

HSP 1 Score: 100.9 bits (250), Expect = 5.3e-18
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 1   SSKGSRRPTKVRKLESFRKWIPIRRVHNCMEKLTLTRQFWIQFEI-LGGMGKELKCNNID 60
           SSKGSRR TK RK  SFRKWIPIRRVHN M+KLTLTRQF IQF I LGG+ KEL+CNNID
Sbjct: 36  SSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFGIQFRIFLGGISKELECNNID 95

Query: 61  SYRYRR 66
           SYR +R
Sbjct: 96  SYRRKR 101

[Close]
BLAST of MS007284 vs. NCBI nr
Match: TYJ12281.1 (hypothetical protein E1A91_A11G338200v1, partial [Gossypium mustelinum])

HSP 1 Score: 100.1 bits (248), Expect = 9.0e-18
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 1  SSKGSRRPTKVRKLESFRKWIPIRRVHNCMEKLTLTRQFWIQFEI-LGGMGKELKCNNID 60
          SSKGSRR TK RK  SFRKWIPIRRVHN M+KLTLTRQF IQF I LGG+ KEL+CNNID
Sbjct: 34 SSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFGIQFGIFLGGISKELECNNID 93

Query: 61 SYRYRR 66
          SYR +R
Sbjct: 94 SYRRKR 99

[Close]
BLAST of MS007284 vs. NCBI nr
Match: KJB79837.1 (hypothetical protein B456_013G068900 [Gossypium raimondii])

HSP 1 Score: 100.1 bits (248), Expect = 9.0e-18
Identity = 52/66 (78.79%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 1   SSKGSRRPTKVRKLESFRKWIPIRRVHNCMEKLTLTRQFWIQFEI-LGGMGKELKCNNID 60
           SSKGSRR TK RK  SFRKWIPIRRVHN M KLTLTRQF IQF I LGG+ KEL+CNNID
Sbjct: 48  SSKGSRRLTKARKPGSFRKWIPIRRVHNRMNKLTLTRQFGIQFRIFLGGISKELECNNID 107

Query: 61  SYRYRR 66
           SYR +R
Sbjct: 108 SYRRKR 113

[Close]
BLAST of MS007284 vs. NCBI nr
Match: TYI03364.1 (hypothetical protein ES332_A11G333500v1 [Gossypium tomentosum])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 1   SSKGSRRPTKVRKLESFRKWIPIRRVHNCMEKLTLTRQFWIQFEI-LGGMGKELKCNNID 60
           SSKGSRR TK RK  SFRKWIPIRRVHN M+KLTLTRQF IQF I LGG+ KEL+CNNID
Sbjct: 45  SSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFRIQFGIFLGGISKELECNNID 104

Query: 61  SYRYRR 66
           SYR +R
Sbjct: 105 SYRRKR 110

[Close]
BLAST of MS007284 vs. ExPASy TrEMBL
Match: A0A2P5VX61 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37329 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1   SSKGSRRPTKVRKLESFRKWIPIRRVHNCMEKLTLTRQFWIQFEI-LGGMGKELKCNNID 60
           SSKGSRR TK RK  SFRKWIPIRRVHN M+KLTLTRQFWIQF I LGG+ KEL+CNNID
Sbjct: 304 SSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGGISKELECNNID 363

Query: 61  SYRYRR 66
           SYR +R
Sbjct: 364 SYRRKR 369

[Close]
BLAST of MS007284 vs. ExPASy TrEMBL
Match: A0A5D2DGW6 (Uncharacterized protein (Fragment) OS=Gossypium darwinii OX=34276 GN=ES288_D02G144500v1 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-18
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 1   SSKGSRRPTKVRKLESFRKWIPIRRVHNCMEKLTLTRQFWIQFEI-LGGMGKELKCNNID 60
           SSKGSRR TK RK  SFRKWIPIRRVHN M+KLTLTRQF IQF I LGG+ KEL+CNNID
Sbjct: 36  SSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFGIQFRIFLGGISKELECNNID 95

Query: 61  SYRYRR 66
           SYR +R
Sbjct: 96  SYRRKR 101

[Close]
BLAST of MS007284 vs. ExPASy TrEMBL
Match: A0A0D2S9P0 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G068900 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.4e-18
Identity = 52/66 (78.79%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 1   SSKGSRRPTKVRKLESFRKWIPIRRVHNCMEKLTLTRQFWIQFEI-LGGMGKELKCNNID 60
           SSKGSRR TK RK  SFRKWIPIRRVHN M KLTLTRQF IQF I LGG+ KEL+CNNID
Sbjct: 48  SSKGSRRLTKARKPGSFRKWIPIRRVHNRMNKLTLTRQFGIQFRIFLGGISKELECNNID 107

Query: 61  SYRYRR 66
           SYR +R
Sbjct: 108 SYRRKR 113

[Close]
BLAST of MS007284 vs. ExPASy TrEMBL
Match: A0A5D2XHD7 (Uncharacterized protein (Fragment) OS=Gossypium mustelinum OX=34275 GN=E1A91_A11G338200v1 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.4e-18
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 1  SSKGSRRPTKVRKLESFRKWIPIRRVHNCMEKLTLTRQFWIQFEI-LGGMGKELKCNNID 60
          SSKGSRR TK RK  SFRKWIPIRRVHN M+KLTLTRQF IQF I LGG+ KEL+CNNID
Sbjct: 34 SSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFGIQFGIFLGGISKELECNNID 93

Query: 61 SYRYRR 66
          SYR +R
Sbjct: 94 SYRRKR 99

[Close]
BLAST of MS007284 vs. ExPASy TrEMBL
Match: A0A5D2NJX8 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G333500v1 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.7e-18
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 1   SSKGSRRPTKVRKLESFRKWIPIRRVHNCMEKLTLTRQFWIQFEI-LGGMGKELKCNNID 60
           SSKGSRR TK RK  SFRKWIPIRRVHN M+KLTLTRQF IQF I LGG+ KEL+CNNID
Sbjct: 45  SSKGSRRLTKARKPGSFRKWIPIRRVHNRMDKLTLTRQFRIQFGIFLGGISKELECNNID 104

Query: 61  SYRYRR 66
           SYR +R
Sbjct: 105 SYRRKR 110

The following BLAST results are available for this feature:
BLAST of MS007284 vs. NCBI nr
Match NameE-valueIdentityDescription
PPR83387.12.8e-1980.30hypothetical protein GOBAR_AA37329 [Gossypium barbadense][more]
TYG79516.15.3e-1878.79hypothetical protein ES288_D02G144500v1, partial [Gossypium darwinii][more]
TYJ12281.19.0e-1878.79hypothetical protein E1A91_A11G338200v1, partial [Gossypium mustelinum][more]
KJB79837.19.0e-1878.79hypothetical protein B456_013G068900 [Gossypium raimondii][more]
TYI03364.11.2e-1778.79hypothetical protein ES332_A11G333500v1 [Gossypium tomentosum][more]
BLAST of MS007284 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS007284 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5VX611.4e-1980.30Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37329 PE=4 SV... [more]
A0A5D2DGW62.6e-1878.79Uncharacterized protein (Fragment) OS=Gossypium darwinii OX=34276 GN=ES288_D02G1... [more]
A0A0D2S9P04.4e-1878.79Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G068900 PE=4 ... [more]
A0A5D2XHD74.4e-1878.79Uncharacterized protein (Fragment) OS=Gossypium mustelinum OX=34275 GN=E1A91_A11... [more]
A0A5D2NJX85.7e-1878.79Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G333500v1 P... [more]
BLAST of MS007284 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS007284.1MS007284.1mRNA