MS007244 (gene) Bitter gourd (TR) v1

Overview


Name	MS007244
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold25: 1701902 .. 1702141 (-)
RNA-Seq Expression	MS007244
Synteny	MS007244

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTAAAGCGACGGACTCGAGCGCGGTCATGATGGACCAGACGAGTTCGTCGACGATCGGAAAGTTGAGCAGGCCGCGAGGCCAGCGGCGGAACCAGCCGGAACTACAGAACGACGAAAGAGCCTCCGCCAATCGGAATATCGAAGATCTGAGTGAAAATTCGGATCCCGGCCACCGGAATGCCGATCTCGACGACCTTCCCGCCATCGCCGCTGCTCCCTTCCGCCTCCCTGAA

mRNA sequence

ATGGAGACTAAAGCGACGGACTCGAGCGCGGTCATGATGGACCAGACGAGTTCGTCGACGATCGGAAAGTTGAGCAGGCCGCGAGGCCAGCGGCGGAACCAGCCGGAACTACAGAACGACGAAAGAGCCTCCGCCAATCGGAATATCGAAGATCTGAGTGAAAATTCGGATCCCGGCCACCGGAATGCCGATCTCGACGACCTTCCCGCCATCGCCGCTGCTCCCTTCCGCCTCCCTGAA

Coding sequence (CDS)

ATGGAGACTAAAGCGACGGACTCGAGCGCGGTCATGATGGACCAGACGAGTTCGTCGACGATCGGAAAGTTGAGCAGGCCGCGAGGCCAGCGGCGGAACCAGCCGGAACTACAGAACGACGAAAGAGCCTCCGCCAATCGGAATATCGAAGATCTGAGTGAAAATTCGGATCCCGGCCACCGGAATGCCGATCTCGACGACCTTCCCGCCATCGCCGCTGCTCCCTTCCGCCTCCCTGAA

Protein sequence

METKATDSSAVMMDQTSSSTIGKLSRPRGQRRNQPELQNDERASANRNIEDLSENSDPGHRNADLDDLPAIAAAPFRLPE

Homology

[Close]

BLAST of MS007244 vs. NCBI nr
Match: KAA0048079.1 (hypothetical protein E6C27_scaffold385G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-10
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 1  METKATDSSAVMMDQTSSSTIGKLSRPRGQRRNQPE-----LQNDERASANRNIEDLSEN 60
          METKATDS AV+ DQ +SST+  L RPR QRRNQ E      +++ER S +RN+EDL EN
Sbjct: 1  METKATDSKAVVTDQRTSSTMEMLRRPRRQRRNQAEELQFHEKSEERRSVHRNMEDLKEN 60

Query: 61 SDPGHRNADLDDLPAIA 73
          S+   RNADL D+PAIA
Sbjct: 61 SNSVQRNADLGDVPAIA 77

[Close]

BLAST of MS007244 vs. ExPASy TrEMBL
Match: A0A5A7U3P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001510 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 1  METKATDSSAVMMDQTSSSTIGKLSRPRGQRRNQPE-----LQNDERASANRNIEDLSEN 60
          METKATDS AV+ DQ +SST+  L RPR QRRNQ E      +++ER S +RN+EDL EN
Sbjct: 1  METKATDSKAVVTDQRTSSTMEMLRRPRRQRRNQAEELQFHEKSEERRSVHRNMEDLKEN 60

Query: 61 SDPGHRNADLDDLPAIA 73
          S+   RNADL D+PAIA
Sbjct: 61 SNSVQRNADLGDVPAIA 77

The following BLAST results are available for this feature:

BLAST of MS007244 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048079.1	5.2e-10	59.74	hypothetical protein E6C27_scaffold385G001510 [Cucumis melo var. makuwa]	[more]

BLAST of MS007244 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS007244 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3P7	2.5e-10	59.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MS007244 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007244.1	MS007244.1	mRNA