MS007222 (gene) Bitter gourd (TR) v1

Overview


Name	MS007222
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Loricrin
Location	scaffold25: 1553262 .. 1553762 (+)
RNA-Seq Expression	MS007222
Synteny	MS007222

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAATCAGGACATGCTGAGAATGTCTCAGATGTTGGTTGCAGTGGTGTTAATGACGACGAAGATGATGAGGACGACGAGACTGGTAAAACTATGGCGGCGGCCCAAATCGGGCATGATTGTGATGATGATGATGGAAAAAAGCACAAGGGTAAAAGGGGTTTTGGAAAGGCGAAGCAGGTGATTTCATATCCATTTCGAAAGGCGAAGAAACAAATTCTTCGGCGGAAAATTAAGAGAGCTTCTTCTTCTTCTTTTACTGCTACTAGTAGAACACTTTCTTCGGATAAGAGGGTTGTTGATGGAAGTGTAAATCAAGGCTGTGGTTTCTGTTTCAAAGAACTAATTTCAGATTCTAAGAATGGGTCTCAAACGACAGACCCAAATAACCGGAAGTTCACTGATGAAATGTTGAAACTGCTCATTGAGAAGAATGATTTCTACTCCAAAGAGTGCAATCCTCATTTAGGTACTTGTCTATCCTCATTTAACGGAATT

mRNA sequence

ATGTTGGAATCAGGACATGCTGAGAATGTCTCAGATGTTGGTTGCAGTGGTGTTAATGACGACGAAGATGATGAGGACGACGAGACTGGTAAAACTATGGCGGCGGCCCAAATCGGGCATGATTGTGATGATGATGATGGAAAAAAGCACAAGGGTAAAAGGGGTTTTGGAAAGGCGAAGCAGGTGATTTCATATCCATTTCGAAAGGCGAAGAAACAAATTCTTCGGCGGAAAATTAAGAGAGCTTCTTCTTCTTCTTTTACTGCTACTAGTAGAACACTTTCTTCGGATAAGAGGGTTGTTGATGGAAGTGTAAATCAAGGCTGTGGTTTCTGTTTCAAAGAACTAATTTCAGATTCTAAGAATGGGTCTCAAACGACAGACCCAAATAACCGGAAGTTCACTGATGAAATGTTGAAACTGCTCATTGAGAAGAATGATTTCTACTCCAAAGAGTGCAATCCTCATTTAGGTACTTGTCTATCCTCATTTAACGGAATT

Coding sequence (CDS)

ATGTTGGAATCAGGACATGCTGAGAATGTCTCAGATGTTGGTTGCAGTGGTGTTAATGACGACGAAGATGATGAGGACGACGAGACTGGTAAAACTATGGCGGCGGCCCAAATCGGGCATGATTGTGATGATGATGATGGAAAAAAGCACAAGGGTAAAAGGGGTTTTGGAAAGGCGAAGCAGGTGATTTCATATCCATTTCGAAAGGCGAAGAAACAAATTCTTCGGCGGAAAATTAAGAGAGCTTCTTCTTCTTCTTTTACTGCTACTAGTAGAACACTTTCTTCGGATAAGAGGGTTGTTGATGGAAGTGTAAATCAAGGCTGTGGTTTCTGTTTCAAAGAACTAATTTCAGATTCTAAGAATGGGTCTCAAACGACAGACCCAAATAACCGGAAGTTCACTGATGAAATGTTGAAACTGCTCATTGAGAAGAATGATTTCTACTCCAAAGAGTGCAATCCTCATTTAGGTACTTGTCTATCCTCATTTAACGGAATT

Protein sequence

MLESGHAENVSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKAKQVISYPFRKAKKQILRRKIKRASSSSFTATSRTLSSDKRVVDGSVNQGCGFCFKELISDSKNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHLGTCLSSFNGI

Homology

[Close]

BLAST of MS007222 vs. NCBI nr
Match: XP_022156407.1 (uncharacterized protein LOC111023307 [Momordica charantia])

HSP 1 Score: 310.8 bits (795), Expect = 6.9e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MLESGHAENVSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKAK 60
           MLESGHAENVSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKAK
Sbjct: 1   MLESGHAENVSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKAK 60

Query: 61  QVISYPFRKAKKQILRRKIKRASSSSFTATSRTLSSDKRVVDGSVNQGCGFCFKELISDS 120
           QVISYPFRKAKKQILRRKIKRASSSSFTATSRTLSSDKRVVDGSVNQGCGFCFKELISDS
Sbjct: 61  QVISYPFRKAKKQILRRKIKRASSSSFTATSRTLSSDKRVVDGSVNQGCGFCFKELISDS 120

Query: 121 KNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHL 158
           KNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHL
Sbjct: 121 KNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHL 157

[Close]

BLAST of MS007222 vs. NCBI nr
Match: XP_038890967.1 (uncharacterized protein LOC120080390 [Benincasa hispida] >XP_038890968.1 uncharacterized protein LOC120080390 [Benincasa hispida] >XP_038890969.1 uncharacterized protein LOC120080390 [Benincasa hispida])

HSP 1 Score: 216.5 bits (550), Expect = 1.8e-52
Identity = 124/163 (76.07%), Postives = 132/163 (80.98%), Query Frame = 0


Query: 1   MLESGHAE-NVSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKA 60
           MLES HAE N+SDVGCSG NDD DDEDDET KTMA  QI HD  DDD K   GK+GFGKA
Sbjct: 1   MLESRHAENNISDVGCSGANDDGDDEDDETRKTMANTQIRHDEFDDDRKMEMGKKGFGKA 60

Query: 61  KQVISYPFRKAKKQILRRKIKRA----SSSSFTATSRTLSSDKRVVDGSVNQGCGFCFKE 120
           KQV+ YPFRKAKKQILRR+IK A    SSSS T T +T SSDKR  DGSVNQGCGFCF +
Sbjct: 61  KQVMFYPFRKAKKQILRRRIKSASSSCSSSSVTCTRKTNSSDKRGFDGSVNQGCGFCFTK 120

Query: 121 L-ISDSKNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHL 158
           L ISDSKNGS  TDPNNRKFT+EMLK+LIEKNDFYSKE NPHL
Sbjct: 121 LSISDSKNGS-PTDPNNRKFTNEMLKVLIEKNDFYSKESNPHL 162

[Close]

BLAST of MS007222 vs. NCBI nr
Match: XP_011648888.1 (uncharacterized protein LOC101216013 [Cucumis sativus] >XP_031736788.1 uncharacterized protein LOC101216013 [Cucumis sativus] >KGN61038.1 hypothetical protein Csa_021211 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 4.1e-49
Identity = 119/163 (73.01%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 1   MLESGHAE-NVSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKA 60
           MLES HAE N+SDVGCSGVNDD DDEDDET  TMA  QI  D  DDD K   GK+GFGKA
Sbjct: 1   MLESRHAENNISDVGCSGVNDDGDDEDDETRNTMAKTQIRDDEFDDDRKMEMGKKGFGKA 60

Query: 61  KQVISYPFRKAKKQILRRKIKR-----ASSSSFTATSRTLSSDKRVVDGSVNQGCGFCFK 120
           KQV+ YPFRKAKKQILRR+IKR     +SSSS T + RT S DKR  DGSVNQGCGFC  
Sbjct: 61  KQVMFYPFRKAKKQILRRRIKRDSSCSSSSSSVTCSRRTNSLDKRGFDGSVNQGCGFCLT 120

Query: 121 EL-ISDSKNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPH 157
           +L ISDSKNGS  TDPN+RKFT+EMLK+LIEKNDFYSKE NPH
Sbjct: 121 KLSISDSKNGS-PTDPNHRKFTNEMLKVLIEKNDFYSKESNPH 162

[Close]

BLAST of MS007222 vs. NCBI nr
Match: XP_008452984.1 (PREDICTED: uncharacterized protein LOC103493824 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 1.0e-47
Identity = 118/170 (69.41%), Postives = 129/170 (75.88%), Query Frame = 0


Query: 1   MLESGHAE-NVSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKA 60
           MLES HAE N+SDVGCSGVNDD DDEDDET  TMA  QI  D  DDD K   GK+GFGKA
Sbjct: 1   MLESRHAENNISDVGCSGVNDDGDDEDDETRNTMAKTQIRDDEFDDDRKMEMGKKGFGKA 60

Query: 61  KQVISYPFRKAKKQILRRKIKRASSSSFTA-----------TSRTLSSDKRVVDGSVNQG 120
           KQV+ YPFRKAKKQILRR+IKR SS S ++           + RT S DKR  DGSVNQG
Sbjct: 61  KQVMFYPFRKAKKQILRRRIKRGSSCSSSSPCSSSSPSVICSRRTNSLDKRGFDGSVNQG 120

Query: 121 CGFCFKEL-ISDSKNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHL 158
           CGFC  +L ISDSKNGS  TDPN+RKFT+EMLK+LIEKNDFYSKE NPHL
Sbjct: 121 CGFCLTKLSISDSKNGS-PTDPNHRKFTNEMLKVLIEKNDFYSKESNPHL 169

[Close]

BLAST of MS007222 vs. NCBI nr
Match: KAG7030094.1 (hypothetical protein SDJN02_08441, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.3 bits (495), Expect = 4.3e-46
Identity = 117/165 (70.91%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 1   MLESGHAEN-VSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKA 60
           MLESG+AEN +SDVGCSGVNDD DDEDDE  K+MA AQI      D GK    ++GFGKA
Sbjct: 1   MLESGNAENHLSDVGCSGVNDDADDEDDERRKSMAKAQI---IAPDLGK----QKGFGKA 60

Query: 61  KQVISYPFRKAKKQILRRKIKR-----ASSSSFTATSRTLSSDKRVVDGSVNQGCGFCFK 120
           K+V+ YPFRKAKKQILRR+IKR     +SSSS   T RT SSDKRV DGSVNQGCGFCF 
Sbjct: 61  KRVMLYPFRKAKKQILRRRIKRDSSSCSSSSSVDCTRRTSSSDKRVFDGSVNQGCGFCFM 120

Query: 121 EL-ISDSKNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHLG 159
           +L ISDSKNG   TDPN+RKF++EMLK+LIEKNDFYSKE NPHLG
Sbjct: 121 KLSISDSKNG-PPTDPNHRKFSNEMLKVLIEKNDFYSKESNPHLG 157

[Close]

BLAST of MS007222 vs. ExPASy TrEMBL
Match: A0A6J1DRZ8 (uncharacterized protein LOC111023307 OS=Momordica charantia OX=3673 GN=LOC111023307 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.4e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MLESGHAENVSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKAK 60
           MLESGHAENVSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKAK
Sbjct: 1   MLESGHAENVSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKAK 60

Query: 61  QVISYPFRKAKKQILRRKIKRASSSSFTATSRTLSSDKRVVDGSVNQGCGFCFKELISDS 120
           QVISYPFRKAKKQILRRKIKRASSSSFTATSRTLSSDKRVVDGSVNQGCGFCFKELISDS
Sbjct: 61  QVISYPFRKAKKQILRRKIKRASSSSFTATSRTLSSDKRVVDGSVNQGCGFCFKELISDS 120

Query: 121 KNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHL 158
           KNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHL
Sbjct: 121 KNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHL 157

[Close]

BLAST of MS007222 vs. ExPASy TrEMBL
Match: A0A0A0LH19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035380 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 2.0e-49
Identity = 119/163 (73.01%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 1   MLESGHAE-NVSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKA 60
           MLES HAE N+SDVGCSGVNDD DDEDDET  TMA  QI  D  DDD K   GK+GFGKA
Sbjct: 1   MLESRHAENNISDVGCSGVNDDGDDEDDETRNTMAKTQIRDDEFDDDRKMEMGKKGFGKA 60

Query: 61  KQVISYPFRKAKKQILRRKIKR-----ASSSSFTATSRTLSSDKRVVDGSVNQGCGFCFK 120
           KQV+ YPFRKAKKQILRR+IKR     +SSSS T + RT S DKR  DGSVNQGCGFC  
Sbjct: 61  KQVMFYPFRKAKKQILRRRIKRDSSCSSSSSSVTCSRRTNSLDKRGFDGSVNQGCGFCLT 120

Query: 121 EL-ISDSKNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPH 157
           +L ISDSKNGS  TDPN+RKFT+EMLK+LIEKNDFYSKE NPH
Sbjct: 121 KLSISDSKNGS-PTDPNHRKFTNEMLKVLIEKNDFYSKESNPH 162

[Close]

BLAST of MS007222 vs. ExPASy TrEMBL
Match: A0A1S3BWA1 (uncharacterized protein LOC103493824 OS=Cucumis melo OX=3656 GN=LOC103493824 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.9e-48
Identity = 118/170 (69.41%), Postives = 129/170 (75.88%), Query Frame = 0


Query: 1   MLESGHAE-NVSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKA 60
           MLES HAE N+SDVGCSGVNDD DDEDDET  TMA  QI  D  DDD K   GK+GFGKA
Sbjct: 1   MLESRHAENNISDVGCSGVNDDGDDEDDETRNTMAKTQIRDDEFDDDRKMEMGKKGFGKA 60

Query: 61  KQVISYPFRKAKKQILRRKIKRASSSSFTA-----------TSRTLSSDKRVVDGSVNQG 120
           KQV+ YPFRKAKKQILRR+IKR SS S ++           + RT S DKR  DGSVNQG
Sbjct: 61  KQVMFYPFRKAKKQILRRRIKRGSSCSSSSPCSSSSPSVICSRRTNSLDKRGFDGSVNQG 120

Query: 121 CGFCFKEL-ISDSKNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHL 158
           CGFC  +L ISDSKNGS  TDPN+RKFT+EMLK+LIEKNDFYSKE NPHL
Sbjct: 121 CGFCLTKLSISDSKNGS-PTDPNHRKFTNEMLKVLIEKNDFYSKESNPHL 169

[Close]

BLAST of MS007222 vs. ExPASy TrEMBL
Match: A0A6J1KI22 (uncharacterized protein LOC111494022 OS=Cucurbita maxima OX=3661 GN=LOC111494022 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 5.1e-45
Identity = 115/164 (70.12%), Postives = 129/164 (78.66%), Query Frame = 0


Query: 1   MLESGHAEN-VSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKA 60
           MLESG+AEN +SDVGCSGVNDD DDED+E  K+MA  QI      D GK    ++GFGKA
Sbjct: 1   MLESGNAENHLSDVGCSGVNDDGDDEDNERRKSMAKGQI---IAPDLGK----QKGFGKA 60

Query: 61  KQVISYPFRKAKKQILRRKIKR-----ASSSSFTATSRTLSSDKRVVDGSVNQGCGFCFK 120
           K+V+ YPFRKAKKQILRR+IKR     +SSSS   T RT SSDKRV DGSVNQGCGFCF 
Sbjct: 61  KRVMLYPFRKAKKQILRRRIKRDSSSCSSSSSVDCTRRTSSSDKRVFDGSVNQGCGFCFM 120

Query: 121 EL-ISDSKNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHL 158
           +L ISDSKNG   TDPN+RKFT+EMLK+LIEKNDFYSKE NPHL
Sbjct: 121 KLSISDSKNG-PPTDPNHRKFTNEMLKVLIEKNDFYSKESNPHL 156

[Close]

BLAST of MS007222 vs. ExPASy TrEMBL
Match: A0A6J1G2R9 (uncharacterized protein LOC111450262 OS=Cucurbita moschata OX=3662 GN=LOC111450262 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.6e-44
Identity = 113/164 (68.90%), Postives = 127/164 (77.44%), Query Frame = 0


Query: 1   MLESGHAEN-VSDVGCSGVNDDEDDEDDETGKTMAAAQIGHDCDDDDGKKHKGKRGFGKA 60
           MLESG+AEN +SDVGCSGVNDD DDEDDE  K+MA AQI      D GK    ++GFGKA
Sbjct: 1   MLESGNAENHLSDVGCSGVNDDADDEDDERRKSMAKAQI---IAPDLGK----QKGFGKA 60

Query: 61  KQVISYPFRKAKKQILRRKIKR-----ASSSSFTATSRTLSSDKRVVDGSVNQGCGFCFK 120
           K+V+ YPFRKAKKQILRR+IKR     +SSSS     RT SSDK V DGSVNQGCGFCF 
Sbjct: 61  KRVMLYPFRKAKKQILRRRIKRDSSSCSSSSSVDCNRRTSSSDKMVFDGSVNQGCGFCFM 120

Query: 121 EL-ISDSKNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPHL 158
           +L ISD KNG   TDPN+RKFT++MLK+LIEKNDFYSKE NPHL
Sbjct: 121 KLSISDPKNG-PPTDPNHRKFTNQMLKVLIEKNDFYSKESNPHL 156

[Close]

BLAST of MS007222 vs. TAIR 10
Match: AT5G26720.1 (unknown protein; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-06
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 119 DSKNGSQTTDPNNRKFTDEMLKLLIEKNDFYSKECNPH 157
           DS   S  +DPN+ +F+ EML++++E NDF S ECNPH
Sbjct: 96  DSSVSSPVSDPNDERFSHEMLRVMLETNDFCSDECNPH 133

The following BLAST results are available for this feature:

BLAST of MS007222 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156407.1	6.9e-81	100.00	uncharacterized protein LOC111023307 [Momordica charantia]	[more]
XP_038890967.1	1.8e-52	76.07	uncharacterized protein LOC120080390 [Benincasa hispida] >XP_038890968.1 unchara...	[more]
XP_011648888.1	4.1e-49	73.01	uncharacterized protein LOC101216013 [Cucumis sativus] >XP_031736788.1 uncharact...	[more]
XP_008452984.1	1.0e-47	69.41	PREDICTED: uncharacterized protein LOC103493824 [Cucumis melo]	[more]
KAG7030094.1	4.3e-46	70.91	hypothetical protein SDJN02_08441, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS007222 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS007222 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRZ8	3.4e-81	100.00	uncharacterized protein LOC111023307 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A0A0LH19	2.0e-49	73.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035380 PE=4 SV=1	[more]
A0A1S3BWA1	4.9e-48	69.41	uncharacterized protein LOC103493824 OS=Cucumis melo OX=3656 GN=LOC103493824 PE=...	[more]
A0A6J1KI22	5.1e-45	70.12	uncharacterized protein LOC111494022 OS=Cucurbita maxima OX=3661 GN=LOC111494022...	[more]
A0A6J1G2R9	5.6e-44	68.90	uncharacterized protein LOC111450262 OS=Cucurbita moschata OX=3662 GN=LOC1114502...	[more]

BLAST of MS007222 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26720.1	2.7e-06	52.63	unknown protein; Has 15 Blast hits to 15 proteins in 5 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..52
None	No IPR available	PANTHER	PTHR35123	OS07G0633900 PROTEIN-RELATED	coord: 8..158
None	No IPR available	PANTHER	PTHR35123:SF2	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE-LIKE PROTEIN	coord: 8..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007222.1	MS007222.1	mRNA