MS007177 (gene) Bitter gourd (TR) v1

Overview
NameMS007177
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold25: 1192925 .. 1193188 (-)
RNA-Seq ExpressionMS007177
SyntenyMS007177
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTCCATCCAGTCCTTCCGATCAAGAACAAGAGCATCCTCCATTTCCCATCTCAAAGCAAGGAAGAGAAGGCTGAAGCATCACTCCTCCGCCGCCGCCACCACGCACAAGAGGCTCCGGGATCTCGAGAAGATCGTAATTCCTGGTCGCCGCCGCCACGAAACCGACCTCAACCACCTCTTCCAAAGAACTGCAGATCACATCTTCGCCTTGCAACTTAAGCTCAACATACTCAAGGATCTCACATCTCTCTATGGCCTC

mRNA sequence

ATGAGGTCCATCCAGTCCTTCCGATCAAGAACAAGAGCATCCTCCATTTCCCATCTCAAAGCAAGGAAGAGAAGGCTGAAGCATCACTCCTCCGCCGCCGCCACCACGCACAAGAGGCTCCGGGATCTCGAGAAGATCGTAATTCCTGGTCGCCGCCGCCACGAAACCGACCTCAACCACCTCTTCCAAAGAACTGCAGATCACATCTTCGCCTTGCAACTTAAGCTCAACATACTCAAGGATCTCACATCTCTCTATGGCCTC

Coding sequence (CDS)

ATGAGGTCCATCCAGTCCTTCCGATCAAGAACAAGAGCATCCTCCATTTCCCATCTCAAAGCAAGGAAGAGAAGGCTGAAGCATCACTCCTCCGCCGCCGCCACCACGCACAAGAGGCTCCGGGATCTCGAGAAGATCGTAATTCCTGGTCGCCGCCGCCACGAAACCGACCTCAACCACCTCTTCCAAAGAACTGCAGATCACATCTTCGCCTTGCAACTTAAGCTCAACATACTCAAGGATCTCACATCTCTCTATGGCCTC

Protein sequence

MRSIQSFRSRTRASSISHLKARKRRLKHHSSAAATTHKRLRDLEKIVIPGRRRHETDLNHLFQRTADHIFALQLKLNILKDLTSLYGL
Homology
BLAST of MS007177 vs. NCBI nr
Match: KAE8651649.1 (hypothetical protein Csa_021260, partial [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 4.6e-15
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 0

Query: 1   MRSIQSFRSRTRASSISHLK-ARKRRL------KHHSSA-----------AATTHKRLRD 60
           MRSI SFRSR +A++IS LK +R+RR+      KH SS+           +A  HKRLR+
Sbjct: 59  MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 118

Query: 61  LEKIVIPGRRRHETDLNHLFQRTADHIFALQLKLNILKDLTSLYGL 89
           L+++V PG   HET+LNHLFQRTAD+I ALQLKLNILKDLTS YGL
Sbjct: 119 LQRLV-PG-HTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 162

BLAST of MS007177 vs. NCBI nr
Match: KAG6598843.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 6.6e-14
Identity = 62/107 (57.94%), Postives = 73/107 (68.22%), Query Frame = 0

Query: 1   MRSIQSFRSRTRASSISHLK-ARKRRLK-----------HHSSAAAT-------THKRLR 60
           MRSI SFR R +A+S ++LK  R+RRLK              SAAAT        HKRLR
Sbjct: 1   MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKNTTSSSAISAAATGTTPSPAMHKRLR 60

Query: 61  DLEKIVIPGRRRHETDLNHLFQRTADHIFALQLKLNILKDLTSLYGL 89
           +L+++V PG   H+TDLNHLFQRTAD+I ALQLKLNILKDLTS YGL
Sbjct: 61  NLQRLV-PG-HNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL 105

BLAST of MS007177 vs. NCBI nr
Match: PON56043.1 (hypothetical protein PanWU01x14_184020 [Parasponia andersonii])

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-04
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 18 HLKARKR-------RLKHHSSAAATTHKRLRDLEKIVIPGRRRHETDLNHLFQRTADHIF 77
          H+K R +        +K   +   TT K+LR L++I+ PG +  E +L  LFQ+TA+HIF
Sbjct: 20 HMKKRSKGKLKLPTSVKTSEAVKTTTLKKLRKLQRIINPGYK--EMNLGTLFQKTANHIF 79

Query: 78 ALQLKLNILKDLTSLYG 88
           L+ KLN+LK L++L+G
Sbjct: 80 VLEAKLNVLKSLSALFG 94

BLAST of MS007177 vs. NCBI nr
Match: PON90720.1 (hypothetical protein TorRG33x02_135770 [Trema orientale])

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-04
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 18 HLKARKR-------RLKHHSSAAATTHKRLRDLEKIVIPGRRRHETDLNHLFQRTADHIF 77
          H+K R +        ++   +A  TT K+LR L++I  PG +  E +L  LFQ+TA+HIF
Sbjct: 17 HMKKRSKGKLKLPTSVERSEAAKTTTLKKLRKLQRITNPGYK--EMNLGTLFQKTANHIF 76

Query: 78 ALQLKLNILKDLTSLYG 88
           L+ KLN+LK L++L+G
Sbjct: 77 VLEAKLNVLKSLSALFG 91

BLAST of MS007177 vs. ExPASy TrEMBL
Match: A0A0A0LJ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.2e-15
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 0

Query: 1   MRSIQSFRSRTRASSISHLK-ARKRRL------KHHSSA-----------AATTHKRLRD 60
           MRSI SFRSR +A++IS LK +R+RR+      KH SS+           +A  HKRLR+
Sbjct: 1   MRSIHSFRSRRQATTISKLKPSRRRRIKLLHLPKHTSSSTVSATTNRTTPSAAMHKRLRN 60

Query: 61  LEKIVIPGRRRHETDLNHLFQRTADHIFALQLKLNILKDLTSLYGL 89
           L+++V PG   HET+LNHLFQRTAD+I ALQLKLNILKDLTS YGL
Sbjct: 61  LQRLV-PG-HTHETNLNHLFQRTADYIHALQLKLNILKDLTSFYGL 104

BLAST of MS007177 vs. ExPASy TrEMBL
Match: A0A2P5C4Q7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_184020 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 18 HLKARKR-------RLKHHSSAAATTHKRLRDLEKIVIPGRRRHETDLNHLFQRTADHIF 77
          H+K R +        +K   +   TT K+LR L++I+ PG +  E +L  LFQ+TA+HIF
Sbjct: 20 HMKKRSKGKLKLPTSVKTSEAVKTTTLKKLRKLQRIINPGYK--EMNLGTLFQKTANHIF 79

Query: 78 ALQLKLNILKDLTSLYG 88
           L+ KLN+LK L++L+G
Sbjct: 80 VLEAKLNVLKSLSALFG 94

BLAST of MS007177 vs. ExPASy TrEMBL
Match: A0A2P5EYW3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_135770 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-04
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 18 HLKARKR-------RLKHHSSAAATTHKRLRDLEKIVIPGRRRHETDLNHLFQRTADHIF 77
          H+K R +        ++   +A  TT K+LR L++I  PG +  E +L  LFQ+TA+HIF
Sbjct: 17 HMKKRSKGKLKLPTSVERSEAAKTTTLKKLRKLQRITNPGYK--EMNLGTLFQKTANHIF 76

Query: 78 ALQLKLNILKDLTSLYG 88
           L+ KLN+LK L++L+G
Sbjct: 77 VLEAKLNVLKSLSALFG 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651649.14.6e-1558.49hypothetical protein Csa_021260, partial [Cucumis sativus][more]
KAG6598843.16.6e-1457.94Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia][more]
PON56043.12.8e-0441.56hypothetical protein PanWU01x14_184020 [Parasponia andersonii][more]
PON90720.13.6e-0441.56hypothetical protein TorRG33x02_135770 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJ572.2e-1558.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047780 PE=4 SV=1[more]
A0A2P5C4Q71.3e-0441.56Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_184020 PE... [more]
A0A2P5EYW31.8e-0441.56Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_135770 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS007177.1MS007177.1mRNA