MS007147 (gene) Bitter gourd (TR) v1

Overview


Name	MS007147
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Light-harvesting chlorophyll a/b-binding protein
Location	scaffold25: 808381 .. 808753 (+)
RNA-Seq Expression	MS007147
Synteny	MS007147

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTCTCCTGGGAAAGATGGCTTTGTTAAAGAGGTGATCATGGTAGATCCTTTGGAAGCCAAACGAATGGCTGCGAAACAAATGGAAAAGATAAAAGCAAAAGAGAAATTGAAGGTAAAGAAAGTTATTGTCTATGGTGCAAAACTTGTTTATAAACAGTATGGATAGTTTTCCTAAGTTCTTTCTTGAAGGAGAGAATAATGGCTATACAAATTTAAGATGTGCTGGAAATAATGTATGTTGTGAAATGTGAACGCAGCGAAGACGTCAAATAGAAGCGATTAATGGAGCATGGGCAATGATTGGTCTCACTGCAGGGCTCGTCATCGAAGGTCAAACTGGAAAAGGCATTCTAGCGCAGGTGAAAAGTTAT

mRNA sequence

GTCTCTCCTGGGAAAGATGGCTTTGTTAAAGAGGTGATCATGGTAGATCCTTTGGAAGCCAAACGAATGGCTGCGAAACAAATGGAAAAGATAAAAGCAAAAGAGAAATTGAAGCGAAGACGTCAAATAGAAGCGATTAATGGAGCATGGGCAATGATTGGTCTCACTGCAGGGCTCGTCATCGAAGGTCAAACTGGAAAAGGCATTCTAGCGCAGGTGAAAAGTTAT

Coding sequence (CDS)

GTCTCTCCTGGGAAAGATGGCTTTGTTAAAGAGGTGATCATGGTAGATCCTTTGGAAGCCAAACGAATGGCTGCGAAACAAATGGAAAAGATAAAAGCAAAAGAGAAATTGAAGCGAAGACGTCAAATAGAAGCGATTAATGGAGCATGGGCAATGATTGGTCTCACTGCAGGGCTCGTCATCGAAGGTCAAACTGGAAAAGGCATTCTAGCGCAGGTGAAAAGTTAT

Protein sequence

VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY

Homology

[Close]

BLAST of MS007147 vs. NCBI nr
Match: XP_022153344.1 (uncharacterized protein LOC111020859 [Momordica charantia])

HSP 1 Score: 139.8 bits (351), Expect = 9.6e-30
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1   VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV 60
           VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV
Sbjct: 53  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV 112

Query: 61  IEGQTGKGILAQVKSY 77
           IEGQTGKGILAQ+  Y
Sbjct: 113 IEGQTGKGILAQLTDY 128

[Close]

BLAST of MS007147 vs. NCBI nr
Match: KAA0055599.1 (uncharacterized protein E6C27_scaffold222G00820 [Cucumis melo var. makuwa] >TYK01325.1 uncharacterized protein E5676_scaffold29G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1   VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV 60
           VSP KDG +K+VIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLV
Sbjct: 62  VSPAKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLV 121

Query: 61  IEGQTGKGILAQVKSY 77
           IEGQTGKGILAQVKSY
Sbjct: 122 IEGQTGKGILAQVKSY 137

[Close]

BLAST of MS007147 vs. NCBI nr
Match: XP_008451793.1 (PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo] >XP_008451800.1 PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo] >XP_008451808.1 PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 4.5e-27
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1   VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV 60
           VSP KDG +K+VIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLV
Sbjct: 83  VSPAKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLV 142

Query: 61  IEGQTGKGILAQVKSY 77
           IEGQTGKGILAQ+  Y
Sbjct: 143 IEGQTGKGILAQLADY 158

[Close]

BLAST of MS007147 vs. NCBI nr
Match: XP_011648927.1 (uncharacterized protein LOC101212671 [Cucumis sativus] >KGN61133.1 hypothetical protein Csa_021338 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 5.9e-27
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV 60
           VSPG+DG +K+VIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLV
Sbjct: 81  VSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLV 140

Query: 61  IEGQTGKGILAQVKSY 77
           IEG+TGKGILAQ+  Y
Sbjct: 141 IEGRTGKGILAQLADY 156

[Close]

BLAST of MS007147 vs. NCBI nr
Match: XP_023538320.1 (uncharacterized protein LOC111799137 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1   VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV 60
           VSPGKD  +K+VIMVDPLEAKR+AAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGL+
Sbjct: 52  VSPGKDNLIKQVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLI 111

Query: 61  IEGQTGKGILAQVKSY 77
           +EGQTGKGILAQ+  Y
Sbjct: 112 VEGQTGKGILAQLAGY 127

[Close]

BLAST of MS007147 vs. ExPASy TrEMBL
Match: A0A6J1DIT0 (uncharacterized protein LOC111020859 OS=Momordica charantia OX=3673 GN=LOC111020859 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.7e-30
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1   VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV 60
           VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV
Sbjct: 53  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV 112

Query: 61  IEGQTGKGILAQVKSY 77
           IEGQTGKGILAQ+  Y
Sbjct: 113 IEGQTGKGILAQLTDY 128

[Close]

BLAST of MS007147 vs. ExPASy TrEMBL
Match: A0A5A7UQ54 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00030 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.7e-29
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1   VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV 60
           VSP KDG +K+VIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLV
Sbjct: 62  VSPAKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLV 121

Query: 61  IEGQTGKGILAQVKSY 77
           IEGQTGKGILAQVKSY
Sbjct: 122 IEGQTGKGILAQVKSY 137

[Close]

BLAST of MS007147 vs. ExPASy TrEMBL
Match: A0A1S3BSE0 (uncharacterized protein LOC103492970 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492970 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1   VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV 60
           VSP KDG +K+VIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLV
Sbjct: 83  VSPAKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLV 142

Query: 61  IEGQTGKGILAQVKSY 77
           IEGQTGKGILAQ+  Y
Sbjct: 143 IEGQTGKGILAQLADY 158

[Close]

BLAST of MS007147 vs. ExPASy TrEMBL
Match: A0A0A0LH95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G058660 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.8e-27
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV 60
           VSPG+DG +K+VIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLV
Sbjct: 81  VSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLV 140

Query: 61  IEGQTGKGILAQVKSY 77
           IEG+TGKGILAQ+  Y
Sbjct: 141 IEGRTGKGILAQLADY 156

[Close]

BLAST of MS007147 vs. ExPASy TrEMBL
Match: A0A6J1FC77 (uncharacterized protein LOC111444076 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444076 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1   VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLV 60
           VSPGKD  +K+VIMVDPLEAKR+AAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGL+
Sbjct: 57  VSPGKDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLI 116

Query: 61  IEGQTGKGILAQVKSY 77
           +EGQTGKGILAQ+  Y
Sbjct: 117 VEGQTGKGILAQLAGY 132

[Close]

BLAST of MS007147 vs. TAIR 10
Match: AT4G28025.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-23
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 3   PGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIE 62
           PGK    KEVIMVDPLEAKR+A+KQME+IK +EK +RRR+IEAINGAWA+IGL  GLVIE
Sbjct: 72  PGKAKVKKEVIMVDPLEAKRLASKQMEEIKGREKQQRRREIEAINGAWAIIGLMIGLVIE 131

Query: 63  GQTGKGILAQVKSY 77
            QTGKGILAQ+  Y
Sbjct: 132 AQTGKGILAQLAGY 145

[Close]

BLAST of MS007147 vs. TAIR 10
Match: AT4G28025.2 (unknown protein. )

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-23
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 3   PGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIE 62
           PGK    KEVIMVDPLEAKR+A+KQME+IK +EK +RRR+IEAINGAWA+IGL  GLVIE
Sbjct: 63  PGKAKVKKEVIMVDPLEAKRLASKQMEEIKGREKQQRRREIEAINGAWAIIGLMIGLVIE 122

Query: 63  GQTGKGILAQVKSY 77
            QTGKGILAQ+  Y
Sbjct: 123 AQTGKGILAQLAGY 136

The following BLAST results are available for this feature:

BLAST of MS007147 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153344.1	9.6e-30	96.05	uncharacterized protein LOC111020859 [Momordica charantia]	[more]
KAA0055599.1	1.4e-28	92.11	uncharacterized protein E6C27_scaffold222G00820 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_008451793.1	4.5e-27	88.16	PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_011648927.1	5.9e-27	86.84	uncharacterized protein LOC101212671 [Cucumis sativus] >KGN61133.1 hypothetical ...	[more]
XP_023538320.1	1.7e-26	84.21	uncharacterized protein LOC111799137 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS007147 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS007147 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIT0	4.7e-30	96.05	uncharacterized protein LOC111020859 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A5A7UQ54	6.7e-29	92.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BSE0	2.2e-27	88.16	uncharacterized protein LOC103492970 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LH95	2.8e-27	86.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G058660 PE=4 SV=1	[more]
A0A6J1FC77	1.4e-26	84.21	uncharacterized protein LOC111444076 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of MS007147 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28025.1	1.9e-23	74.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G28025.2	1.9e-23	74.32	unknown protein.	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 15..66 e-value: 6.5E-5 score: 23.5
None	No IPR available	PANTHER	PTHR37752	OS02G0610700 PROTEIN	coord: 1..76
None	No IPR available	PANTHER	PTHR37752:SF1	OS02G0610700 PROTEIN	coord: 1..76
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 32..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007147.1	MS007147.1	mRNA