MS007122 (gene) Bitter gourd (TR) v1

Overview


Name	MS007122
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RHOMBOID-like protein
Location	scaffold25: 528391 .. 528510 (+)
RNA-Seq Expression	MS007122
Synteny	MS007122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGAAAAGATGGGTGCTCTGGAAGTTGATAAAATGGTTTACGGGCACCAGCCATGGAGATTGATCTCTTGGGCATTTTCAAGTTATTTAATTTTTATTATTTTGGAGACCAATTTATCG

mRNA sequence

TTAGAAAAGATGGGTGCTCTGGAAGTTGATAAAATGGTTTACGGGCACCAGCCATGGAGATTGATCTCTTGGGCATTTTCAAGTTATTTAATTTTTATTATTTTGGAGACCAATTTATCG

Coding sequence (CDS)

TTAGAAAAGATGGGTGCTCTGGAAGTTGATAAAATGGTTTACGGGCACCAGCCATGGAGATTGATCTCTTGGGCATTTTCAAGTTATTTAATTTTTATTATTTTGGAGACCAATTTATCG

Protein sequence

LEKMGALEVDKMVYGHQPWRLISWAFSSYLIFIILETNLS

Homology

[Close]

BLAST of MS007122 vs. NCBI nr
Match: XP_038895553.1 (RHOMBOID-like protein 1 [Benincasa hispida])

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1   LEKMGALEVDKMVYGHQPWRLISWAFSSYLIFIILETNLS 41
           LEKMGALEVDK+VYGHQPWRLIS  +    +F IL   LS
Sbjct: 107 LEKMGALEVDKVVYGHQPWRLISCLWLHAGVFHILANMLS 146

[Close]

BLAST of MS007122 vs. NCBI nr
Match: KAG6583424.1 (RHOMBOID-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1   LEKMGALEVDKMVYGHQPWRLISWAFSSYLIFIILETNLS 41
           LEKMGALEVDK+VYGHQPWRLIS  +    +F IL   LS
Sbjct: 109 LEKMGALEVDKVVYGHQPWRLISCLWLHAGVFHILANMLS 148

[Close]

BLAST of MS007122 vs. NCBI nr
Match: XP_022970547.1 (RHOMBOID-like protein 1 [Cucurbita maxima])

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1   LEKMGALEVDKMVYGHQPWRLISWAFSSYLIFIILETNLS 41
           LEKMGALEVDK+VYGHQPWRLIS  +    +F IL   LS
Sbjct: 109 LEKMGALEVDKVVYGHQPWRLISCLWLHAGVFHILANMLS 148

[Close]

BLAST of MS007122 vs. NCBI nr
Match: XP_022998333.1 (RHOMBOID-like protein 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1   LEKMGALEVDKMVYGHQPWRLISWAFSSYLIFIILETNLS 41
           LEKMGALEVDK+VYGHQPWRLIS  +    +F IL   LS
Sbjct: 114 LEKMGALEVDKVVYGHQPWRLISCMWLHAGVFHILANMLS 153

[Close]

BLAST of MS007122 vs. NCBI nr
Match: XP_023519656.1 (RHOMBOID-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1   LEKMGALEVDKMVYGHQPWRLISWAFSSYLIFIILETNLS 41
           LEKMGALEVDK+VYGHQPWRLIS  +    +F IL   LS
Sbjct: 109 LEKMGALEVDKVVYGHQPWRLISCLWLHAGVFHILANMLS 148

[Close]

BLAST of MS007122 vs. ExPASy TrEMBL
Match: A0A1S3C5Q5 (RHOMBOID-like protein OS=Cucumis melo OX=3656 GN=LOC103497154 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-04
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1   LEKMGALEVDKMVYGHQPWRLISWAFSSYLIFIILETNLS 41
           LEKMGALEVDK+VYGHQPWRLIS  +    +F IL   LS
Sbjct: 107 LEKMGALEVDKVVYGHQPWRLISCLWLHAGVFHILANMLS 146

[Close]

BLAST of MS007122 vs. ExPASy TrEMBL
Match: A0A5D3BGU5 (RHOMBOID-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002170 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-04
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1   LEKMGALEVDKMVYGHQPWRLISWAFSSYLIFIILETNLS 41
           LEKMGALEVDK+VYGHQPWRLIS  +    +F IL   LS
Sbjct: 107 LEKMGALEVDKVVYGHQPWRLISCLWLHAGVFHILANMLS 146

[Close]

BLAST of MS007122 vs. ExPASy TrEMBL
Match: A0A6J1K9Y9 (RHOMBOID-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493002 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-04
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1   LEKMGALEVDKMVYGHQPWRLISWAFSSYLIFIILETNLS 41
           LEKMGALEVDK+VYGHQPWRLIS  +    +F IL   LS
Sbjct: 114 LEKMGALEVDKVVYGHQPWRLISCMWLHAGVFHILANMLS 153

[Close]

BLAST of MS007122 vs. ExPASy TrEMBL
Match: A0A6J1KGF7 (RHOMBOID-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493002 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-04
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1   LEKMGALEVDKMVYGHQPWRLISWAFSSYLIFIILETNLS 41
           LEKMGALEVDK+VYGHQPWRLIS  +    +F IL   LS
Sbjct: 114 LEKMGALEVDKVVYGHQPWRLISCMWLHAGVFHILANMLS 153

[Close]

BLAST of MS007122 vs. ExPASy TrEMBL
Match: A0A6J1HZE9 (RHOMBOID-like protein OS=Cucurbita maxima OX=3661 GN=LOC111469490 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-04
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1   LEKMGALEVDKMVYGHQPWRLISWAFSSYLIFIILETNLS 41
           LEKMGALEVDK+VYGHQPWRLIS  +    +F IL   LS
Sbjct: 109 LEKMGALEVDKVVYGHQPWRLISCLWLHAGVFHILANMLS 148

The following BLAST results are available for this feature:

BLAST of MS007122 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895553.1	3.7e-04	67.50	RHOMBOID-like protein 1 [Benincasa hispida]	[more]
KAG6583424.1	3.7e-04	67.50	RHOMBOID-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022970547.1	3.7e-04	67.50	RHOMBOID-like protein 1 [Cucurbita maxima]	[more]
XP_022998333.1	3.7e-04	67.50	RHOMBOID-like protein 1 isoform X2 [Cucurbita maxima]	[more]
XP_023519656.1	3.7e-04	67.50	RHOMBOID-like protein 1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS007122 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS007122 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5Q5	1.8e-04	67.50	RHOMBOID-like protein OS=Cucumis melo OX=3656 GN=LOC103497154 PE=3 SV=1	[more]
A0A5D3BGU5	1.8e-04	67.50	RHOMBOID-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19...	[more]
A0A6J1K9Y9	1.8e-04	67.50	RHOMBOID-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493002 PE=3 SV=1	[more]
A0A6J1KGF7	1.8e-04	67.50	RHOMBOID-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493002 PE=3 SV=1	[more]
A0A6J1HZE9	1.8e-04	67.50	RHOMBOID-like protein OS=Cucurbita maxima OX=3661 GN=LOC111469490 PE=3 SV=1	[more]

BLAST of MS007122 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS007122.1	MS007122.1	mRNA