MS007069 (gene) Bitter gourd (TR) v1

Overview
NameMS007069
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionhistone-lysine N-methyltransferase SUVR4
Locationscaffold430: 294787 .. 294885 (-)
RNA-Seq ExpressionMS007069
SyntenyMS007069
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTACATTGACTGCAACTAGATCATTAGGACTTTTCGATGACCAAGTAAAATCAATTTTGAAGGATCTTCTCAAGTTGTATGATGGAAACTGGAAACTC

mRNA sequence

ACTACATTGACTGCAACTAGATCATTAGGACTTTTCGATGACCAAGTAAAATCAATTTTGAAGGATCTTCTCAAGTTGTATGATGGAAACTGGAAACTC

Coding sequence (CDS)

ACTACATTGACTGCAACTAGATCATTAGGACTTTTCGATGACCAAGTAAAATCAATTTTGAAGGATCTTCTCAAGTTGTATGATGGAAACTGGAAACTC

Protein sequence

TTLTATRSLGLFDDQVKSILKDLLKLYDGNWKL
Homology
BLAST of MS007069 vs. NCBI nr
Match: XP_022149816.1 (histone-lysine N-methyltransferase SUVR4 isoform X2 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-06
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 3  LTATRSLGLFDDQVKSILKDLLKLYDGNWKL 34
          LTATRSLGL DDQVK ILKDLLKLYDGNWKL
Sbjct: 11 LTATRSLGLSDDQVKPILKDLLKLYDGNWKL 41

BLAST of MS007069 vs. NCBI nr
Match: XP_022149814.1 (histone-lysine N-methyltransferase SUVR4 isoform X1 [Momordica charantia] >XP_022149815.1 histone-lysine N-methyltransferase SUVR4 isoform X1 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-06
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 3  LTATRSLGLFDDQVKSILKDLLKLYDGNWKL 34
          LTATRSLGL DDQVK ILKDLLKLYDGNWKL
Sbjct: 11 LTATRSLGLSDDQVKPILKDLLKLYDGNWKL 41

BLAST of MS007069 vs. NCBI nr
Match: XP_038891081.1 (histone-lysine N-methyltransferase SUVR4 [Benincasa hispida])

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 4  TATRSLGLFDDQVKSILKDLLKLYDGNWKL 34
          +ATRSLG+ DDQVK ILKDLLK+YDGNWKL
Sbjct: 12 SATRSLGIPDDQVKPILKDLLKMYDGNWKL 41

BLAST of MS007069 vs. NCBI nr
Match: XP_016899481.1 (PREDICTED: histone-lysine N-methyltransferase SUVR4 [Cucumis melo])

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-04
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 4  TATRSLGLFDDQVKSILKDLLKLYDGNWKL 34
          +ATRSLG+ DDQ+K IL+DLLK+YDGNWKL
Sbjct: 12 SATRSLGIPDDQIKPILRDLLKMYDGNWKL 41

BLAST of MS007069 vs. NCBI nr
Match: XP_031736404.1 (histone-lysine N-methyltransferase SUVR4 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-04
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 4  TATRSLGLFDDQVKSILKDLLKLYDGNWKL 34
          +ATRSLG+ DDQ+K IL+DLLK+YDGNWKL
Sbjct: 12 SATRSLGIPDDQIKPILRDLLKMYDGNWKL 41

BLAST of MS007069 vs. ExPASy TrEMBL
Match: A0A6J1D855 (histone-lysine N-methyltransferase SUVR4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018158 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 3  LTATRSLGLFDDQVKSILKDLLKLYDGNWKL 34
          LTATRSLGL DDQVK ILKDLLKLYDGNWKL
Sbjct: 11 LTATRSLGLSDDQVKPILKDLLKLYDGNWKL 41

BLAST of MS007069 vs. ExPASy TrEMBL
Match: A0A6J1D9J1 (histone-lysine N-methyltransferase SUVR4 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018158 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 3  LTATRSLGLFDDQVKSILKDLLKLYDGNWKL 34
          LTATRSLGL DDQVK ILKDLLKLYDGNWKL
Sbjct: 11 LTATRSLGLSDDQVKPILKDLLKLYDGNWKL 41

BLAST of MS007069 vs. ExPASy TrEMBL
Match: A0A0A0LH63 (Pre-SET domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075980 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 4  TATRSLGLFDDQVKSILKDLLKLYDGNWKL 34
          +ATRSLG+ DDQ+K IL+DLLK+YDGNWKL
Sbjct: 4  SATRSLGIPDDQIKPILRDLLKMYDGNWKL 33

BLAST of MS007069 vs. ExPASy TrEMBL
Match: A0A1S4DU17 (histone-lysine N-methyltransferase SUVR4 OS=Cucumis melo OX=3656 GN=LOC103485845 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 4  TATRSLGLFDDQVKSILKDLLKLYDGNWKL 34
          +ATRSLG+ DDQ+K IL+DLLK+YDGNWKL
Sbjct: 12 SATRSLGIPDDQIKPILRDLLKMYDGNWKL 41

BLAST of MS007069 vs. ExPASy TrEMBL
Match: A0A6J1FBX0 (histone-lysine N-methyltransferase SUVR4-like OS=Cucurbita moschata OX=3662 GN=LOC111444207 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-04
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 3  LTATRSLGLFDDQVKSILKDLLKLYDGNWKL 34
          L+ATRS+G+ DDQVK IL+DLLK YDGNWKL
Sbjct: 11 LSATRSIGIPDDQVKPILRDLLKTYDGNWKL 41

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149816.13.2e-0693.55histone-lysine N-methyltransferase SUVR4 isoform X2 [Momordica charantia][more]
XP_022149814.13.2e-0693.55histone-lysine N-methyltransferase SUVR4 isoform X1 [Momordica charantia] >XP_02... [more]
XP_038891081.11.0e-0483.33histone-lysine N-methyltransferase SUVR4 [Benincasa hispida][more]
XP_016899481.13.0e-0476.67PREDICTED: histone-lysine N-methyltransferase SUVR4 [Cucumis melo][more]
XP_031736404.13.0e-0476.67histone-lysine N-methyltransferase SUVR4 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D8551.6e-0693.55histone-lysine N-methyltransferase SUVR4 isoform X1 OS=Momordica charantia OX=36... [more]
A0A6J1D9J11.6e-0693.55histone-lysine N-methyltransferase SUVR4 isoform X2 OS=Momordica charantia OX=36... [more]
A0A0A0LH631.5e-0476.67Pre-SET domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075980 PE=... [more]
A0A1S4DU171.5e-0476.67histone-lysine N-methyltransferase SUVR4 OS=Cucumis melo OX=3656 GN=LOC103485845... [more]
A0A6J1FBX01.9e-0477.42histone-lysine N-methyltransferase SUVR4-like OS=Cucurbita moschata OX=3662 GN=L... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018848WIYLD domainPFAMPF10440WIYLDcoord: 3..33
e-value: 5.6E-8
score: 32.5
IPR043017WIYLD domain superfamilyGENE3D1.10.8.850coord: 1..33
e-value: 9.3E-9
score: 36.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS007069.1MS007069.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0018024 histone-lysine N-methyltransferase activity