MS006865 (gene) Bitter gourd (TR) v1

Overview
NameMS006865
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMitochondrial protein YMF19
Locationscaffold871: 169759 .. 169848 (-)
RNA-Seq ExpressionMS006865
SyntenyMS006865
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTTCCCCAACAGTTTGGAAGATATCTTGAGAAAAGGTTTTAACACTGATGTATCCTATATGTACTCTAGTTTTTTCGAAGTATCACAA

mRNA sequence

AAGTTCCCCAACAGTTTGGAAGATATCTTGAGAAAAGGTTTTAACACTGATGTATCCTATATGTACTCTAGTTTTTTCGAAGTATCACAA

Coding sequence (CDS)

AAGTTCCCCAACAGTTTGGAAGATATCTTGAGAAAAGGTTTTAACACTGATGTATCCTATATGTACTCTAGTTTTTTCGAAGTATCACAA

Protein sequence

KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ
Homology
[Close]
BLAST of MS006865 vs. NCBI nr
Match: QYA18253.1 (ATP synthase F1 subunit 8 [Tetragonia tetragonoides])

HSP 1 Score: 55.8 bits (133), Expect = 7.2e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLEDILRKGFNT VSYMYSS FEVSQ
Sbjct: 58 KDPNSLEDILRKGFNTGVSYMYSSLFEVSQ 87

[Close]
BLAST of MS006865 vs. NCBI nr
Match: QCF40756.1 (ATPase subunit 8, partial [Cynomorium coccineum subsp. coccineum])

HSP 1 Score: 55.8 bits (133), Expect = 7.2e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLEDILRKGFNT VSYMYSS FEVSQ
Sbjct: 40 KDPNSLEDILRKGFNTGVSYMYSSLFEVSQ 69

[Close]
BLAST of MS006865 vs. NCBI nr
Match: QCF40757.1 (ATPase subunit 8, partial [Cynomorium coccineum subsp. coccineum])

HSP 1 Score: 55.8 bits (133), Expect = 7.2e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLEDILRKGFNT VSYMYSS FEVSQ
Sbjct: 44 KDPNSLEDILRKGFNTGVSYMYSSLFEVSQ 73

[Close]
BLAST of MS006865 vs. NCBI nr
Match: QCF40751.1 (ATPase subunit 8, partial [Cynomorium coccineum subsp. coccineum])

HSP 1 Score: 55.8 bits (133), Expect = 7.2e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLEDILRKGFNT VSYMYSS FEVSQ
Sbjct: 20 KDPNSLEDILRKGFNTGVSYMYSSLFEVSQ 49

[Close]
BLAST of MS006865 vs. NCBI nr
Match: ANS54535.1 (ATPase subunit 8 [Cynomorium coccineum])

HSP 1 Score: 55.8 bits (133), Expect = 7.2e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLEDILRKGFNT VSYMYSS FEVSQ
Sbjct: 58 KDPNSLEDILRKGFNTGVSYMYSSLFEVSQ 87

[Close]
BLAST of MS006865 vs. ExPASy Swiss-Prot
Match: P93303 (ATP synthase protein YMF19 OS=Arabidopsis thaliana OX=3702 GN=YMF19 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.4e-06
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLED+LRKGF+T VSYMY+S FEVSQ
Sbjct: 58 KDPNSLEDLLRKGFSTGVSYMYASLFEVSQ 87

[Close]
BLAST of MS006865 vs. ExPASy Swiss-Prot
Match: Q03152 (Putative ATP synthase protein YMF19 OS=Brassica napus OX=3708 GN=YMF19 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.4e-06
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLED+LRKGF+T VSYMY+S FEVSQ
Sbjct: 58 KDPNSLEDLLRKGFSTGVSYMYASLFEVSQ 87

[Close]
BLAST of MS006865 vs. ExPASy Swiss-Prot
Match: Q06564 (Putative ATP synthase protein YMF19 OS=Raphanus sativus OX=3726 GN=YMF19 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.4e-06
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLED+LRKGF+T VSYMY+S FEVSQ
Sbjct: 58 KDPNSLEDLLRKGFSTGVSYMYASLFEVSQ 87

[Close]
BLAST of MS006865 vs. ExPASy Swiss-Prot
Match: P08746 (Putative ATP synthase protein YMF19 OS=Oenothera berteroana OX=3950 GN=YMF19 PE=3 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 1.8e-06
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLE++LRKGF+T VSYMYSS FEVSQ
Sbjct: 58 KDPNSLEELLRKGFSTGVSYMYSSLFEVSQ 87

[Close]
BLAST of MS006865 vs. ExPASy Swiss-Prot
Match: P41248 (Putative ATP synthase protein YMF19 OS=Helianthus annuus OX=4232 GN=YMF19 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 5.2e-06
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLEDILRKGF+T +SYMYSS FE SQ
Sbjct: 58 KDPNSLEDILRKGFSTGLSYMYSSLFEDSQ 87

[Close]
BLAST of MS006865 vs. ExPASy TrEMBL
Match: D7RMV2 (Mitochondrial protein YMF19 OS=Silene latifolia OX=37657 GN=atp8 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLEDILRKGFNT VSYMYSS FEVSQ
Sbjct: 58 KDPNSLEDILRKGFNTGVSYMYSSLFEVSQ 87

[Close]
BLAST of MS006865 vs. ExPASy TrEMBL
Match: J7FB48 (Mitochondrial protein YMF19 OS=Silene vulgaris OX=42043 GN=atp8 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLEDILRKGFNT VSYMYSS FEVSQ
Sbjct: 58 KDPNSLEDILRKGFNTGVSYMYSSLFEVSQ 87

[Close]
BLAST of MS006865 vs. ExPASy TrEMBL
Match: A0A3G2BRV9 (Mitochondrial protein YMF19 OS=Silene vulgaris OX=42043 GN=atp8 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLEDILRKGFNT VSYMYSS FEVSQ
Sbjct: 58 KDPNSLEDILRKGFNTGVSYMYSSLFEVSQ 87

[Close]
BLAST of MS006865 vs. ExPASy TrEMBL
Match: M9MU24 (Mitochondrial protein YMF19 OS=Silene vulgaris OX=42043 GN=atp8 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLEDILRKGFNT VSYMYSS FEVSQ
Sbjct: 58 KDPNSLEDILRKGFNTGVSYMYSSLFEVSQ 87

[Close]
BLAST of MS006865 vs. ExPASy TrEMBL
Match: A0A4D6Q2V6 (Mitochondrial protein YMF19 (Fragment) OS=Cynomorium coccineum subsp. coccineum OX=2461410 GN=atp8 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-05
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLEDILRKGFNT VSYMYSS FEVSQ
Sbjct: 44 KDPNSLEDILRKGFNTGVSYMYSSLFEVSQ 73

[Close]
BLAST of MS006865 vs. TAIR 10
Match: AT2G07707.1 (Plant mitochondrial ATPase, F0 complex, subunit 8 protein )

HSP 1 Score: 52.0 bits (123), Expect = 9.7e-08
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLED+LRKGF+T VSYMY+S FEVSQ
Sbjct: 58 KDPNSLEDLLRKGFSTGVSYMYASLFEVSQ 87

[Close]
BLAST of MS006865 vs. TAIR 10
Match: ATMG00480.1 (Plant mitochondrial ATPase, F0 complex, subunit 8 protein )

HSP 1 Score: 52.0 bits (123), Expect = 9.7e-08
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  KFPNSLEDILRKGFNTDVSYMYSSFFEVSQ 31
          K PNSLED+LRKGF+T VSYMY+S FEVSQ
Sbjct: 58 KDPNSLEDLLRKGFSTGVSYMYASLFEVSQ 87

The following BLAST results are available for this feature:
BLAST of MS006865 vs. NCBI nr
Match NameE-valueIdentityDescription
QYA18253.17.2e-0590.00ATP synthase F1 subunit 8 [Tetragonia tetragonoides][more]
QCF40756.17.2e-0590.00ATPase subunit 8, partial [Cynomorium coccineum subsp. coccineum][more]
QCF40757.17.2e-0590.00ATPase subunit 8, partial [Cynomorium coccineum subsp. coccineum][more]
QCF40751.17.2e-0590.00ATPase subunit 8, partial [Cynomorium coccineum subsp. coccineum][more]
ANS54535.17.2e-0590.00ATPase subunit 8 [Cynomorium coccineum][more]
BLAST of MS006865 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P933031.4e-0680.00ATP synthase protein YMF19 OS=Arabidopsis thaliana OX=3702 GN=YMF19 PE=1 SV=1[more]
Q031521.4e-0680.00Putative ATP synthase protein YMF19 OS=Brassica napus OX=3708 GN=YMF19 PE=3 SV=1[more]
Q065641.4e-0680.00Putative ATP synthase protein YMF19 OS=Raphanus sativus OX=3726 GN=YMF19 PE=3 SV... [more]
P087461.8e-0680.00Putative ATP synthase protein YMF19 OS=Oenothera berteroana OX=3950 GN=YMF19 PE=... [more]
P412485.2e-0680.00Putative ATP synthase protein YMF19 OS=Helianthus annuus OX=4232 GN=YMF19 PE=3 S... [more]
BLAST of MS006865 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
D7RMV23.5e-0590.00Mitochondrial protein YMF19 OS=Silene latifolia OX=37657 GN=atp8 PE=2 SV=1[more]
J7FB483.5e-0590.00Mitochondrial protein YMF19 OS=Silene vulgaris OX=42043 GN=atp8 PE=3 SV=1[more]
A0A3G2BRV93.5e-0590.00Mitochondrial protein YMF19 OS=Silene vulgaris OX=42043 GN=atp8 PE=3 SV=1[more]
M9MU243.5e-0590.00Mitochondrial protein YMF19 OS=Silene vulgaris OX=42043 GN=atp8 PE=3 SV=1[more]
A0A4D6Q2V63.5e-0590.00Mitochondrial protein YMF19 (Fragment) OS=Cynomorium coccineum subsp. coccineum ... [more]
BLAST of MS006865 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07707.19.7e-0880.00Plant mitochondrial ATPase, F0 complex, subunit 8 protein [more]
ATMG00480.19.7e-0880.00Plant mitochondrial ATPase, F0 complex, subunit 8 protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006865.1MS006865.1mRNA