MS006821 (gene) Bitter gourd (TR) v1

Overview
NameMS006821
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncentromere/kinetochore protein zw10 homolog
Locationscaffold60: 839226 .. 839366 (-)
RNA-Seq ExpressionMS006821
SyntenyMS006821
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGAAGGAGAAACCCTGTACTTGGGGATAGTTCATATTGTTAAGTTTATCTACAGACACATATGTTATCAAAATAGTTCTTGGATTCAACATTTTGGGAGATTAACATGGCTTCGGATGTCAGAACTGATGATCAATGGG

mRNA sequence

ATTGAAGGAGAAACCCTGTACTTGGGGATAGTTCATATTGTTAAGTTTATCTACAGACACATATGTTATCAAAATAGTTCTTGGATTCAACATTTTGGGAGATTAACATGGCTTCGGATGTCAGAACTGATGATCAATGGG

Coding sequence (CDS)

ATTGAAGGAGAAACCCTGTACTTGGGGATAGTTCATATTGTTAAGTTTATCTACAGACACATATGTTATCAAAATAGTTCTTGGATTCAACATTTTGGGAGATTAACATGGCTTCGGATGTCAGAACTGATGATCAATGGG

Protein sequence

IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMING
Homology
BLAST of MS006821 vs. NCBI nr
Match: XP_022149708.1 (centromere/kinetochore protein zw10 homolog [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0

Query: 1   IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMING 48
           ++GETLY GIVHIVKFIYRHICYQNSSWIQ FGRLTW RMSEL+I+G
Sbjct: 293 VDGETLYSGIVHIVKFIYRHICYQNSSWIQRFGRLTWPRMSELIISG 339

BLAST of MS006821 vs. NCBI nr
Match: XP_038902931.1 (centromere/kinetochore protein zw10 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1   IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMING 48
           ++GET+Y  +  IVKFIYRHICYQNSSWIQ FGRLTW RMSEL+I+G
Sbjct: 293 VDGETIYSEVTRIVKFIYRHICYQNSSWIQRFGRLTWPRMSELIISG 339

BLAST of MS006821 vs. NCBI nr
Match: XP_038902933.1 (centromere/kinetochore protein zw10 homolog isoform X3 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1   IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMING 48
           ++GET+Y  +  IVKFIYRHICYQNSSWIQ FGRLTW RMSEL+I+G
Sbjct: 293 VDGETIYSEVTRIVKFIYRHICYQNSSWIQRFGRLTWPRMSELIISG 339

BLAST of MS006821 vs. NCBI nr
Match: XP_038902932.1 (centromere/kinetochore protein zw10 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1   IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMING 48
           ++GET+Y  +  IVKFIYRHICYQNSSWIQ FGRLTW RMSEL+I+G
Sbjct: 293 VDGETIYSEVTRIVKFIYRHICYQNSSWIQRFGRLTWPRMSELIISG 339

BLAST of MS006821 vs. NCBI nr
Match: KGN47022.2 (hypothetical protein Csa_020966 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 7.3e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1   IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMING 48
           I+GET+Y  +  IVKFI +HICYQN+SWIQHFGRLTW RMSEL+I+G
Sbjct: 104 IDGETIYSEVTQIVKFICKHICYQNNSWIQHFGRLTWPRMSELIISG 150

BLAST of MS006821 vs. ExPASy Swiss-Prot
Match: O48626 (Centromere/kinetochore protein zw10 homolog OS=Arabidopsis thaliana OX=3702 GN=ZW10 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-08
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 1   IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMIN 47
           ++G+ +Y GI+ +VKFI   +C+ N +WI  FGRLTW R+SEL+I+
Sbjct: 294 VDGDAMYSGILKVVKFICSSLCFGNVTWIHSFGRLTWPRISELIIS 339

BLAST of MS006821 vs. ExPASy TrEMBL
Match: A0A6J1D7H6 (centromere/kinetochore protein zw10 homolog OS=Momordica charantia OX=3673 GN=LOC111018070 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-15
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0

Query: 1   IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMING 48
           ++GETLY GIVHIVKFIYRHICYQNSSWIQ FGRLTW RMSEL+I+G
Sbjct: 293 VDGETLYSGIVHIVKFIYRHICYQNSSWIQRFGRLTWPRMSELIISG 339

BLAST of MS006821 vs. ExPASy TrEMBL
Match: A0A0A0KDY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G168260 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1   IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMING 48
           I+GET+Y  +  IVKFI +HICYQN+SWIQHFGRLTW RMSEL+I+G
Sbjct: 293 IDGETIYSEVTQIVKFICKHICYQNNSWIQHFGRLTWPRMSELIISG 339

BLAST of MS006821 vs. ExPASy TrEMBL
Match: A0A5A7UIV3 (Centromere/kinetochore protein zw10-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002760 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.6e-12
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1   IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMING 48
           ++GET+Y  +  IVKFI +HICYQN+SWIQHFGRLTW RMSEL+I+G
Sbjct: 364 VDGETIYSEVTQIVKFIRKHICYQNNSWIQHFGRLTWPRMSELIISG 410

BLAST of MS006821 vs. ExPASy TrEMBL
Match: A0A1S3C346 (centromere/kinetochore protein zw10 homolog OS=Cucumis melo OX=3656 GN=LOC103496345 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.6e-12
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 1   IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMING 48
           ++GET+Y  +  IVKFI +HICYQN+SWIQHFGRLTW RMSEL+I+G
Sbjct: 293 VDGETIYSEVTQIVKFIRKHICYQNNSWIQHFGRLTWPRMSELIISG 339

BLAST of MS006821 vs. ExPASy TrEMBL
Match: A0A6J1J9K5 (centromere/kinetochore protein zw10 homolog OS=Cucurbita maxima OX=3661 GN=LOC111483822 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 1   IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMING 48
           ++ ET+Y G+  IVKFI RHICYQNSSWIQ FGRLTW RMSEL+I+G
Sbjct: 291 VDCETIYSGVTQIVKFISRHICYQNSSWIQRFGRLTWPRMSELIISG 337

BLAST of MS006821 vs. TAIR 10
Match: AT2G32900.1 (centromere/kinetochore protein, putative (ZW10) )

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-09
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 1   IEGETLYLGIVHIVKFIYRHICYQNSSWIQHFGRLTWLRMSELMIN 47
           ++G+ +Y GI+ +VKFI   +C+ N +WI  FGRLTW R+SEL+I+
Sbjct: 294 VDGDAMYSGILKVVKFICSSLCFGNVTWIHSFGRLTWPRISELIIS 339

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149708.13.2e-1585.11centromere/kinetochore protein zw10 homolog [Momordica charantia][more]
XP_038902931.11.5e-1274.47centromere/kinetochore protein zw10 homolog isoform X1 [Benincasa hispida][more]
XP_038902933.11.5e-1274.47centromere/kinetochore protein zw10 homolog isoform X3 [Benincasa hispida][more]
XP_038902932.11.5e-1274.47centromere/kinetochore protein zw10 homolog isoform X2 [Benincasa hispida][more]
KGN47022.27.3e-1272.34hypothetical protein Csa_020966 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
O486263.9e-0850.00Centromere/kinetochore protein zw10 homolog OS=Arabidopsis thaliana OX=3702 GN=Z... [more]
Match NameE-valueIdentityDescription
A0A6J1D7H61.5e-1585.11centromere/kinetochore protein zw10 homolog OS=Momordica charantia OX=3673 GN=LO... [more]
A0A0A0KDY03.5e-1272.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G168260 PE=3 SV=1[more]
A0A5A7UIV34.6e-1270.21Centromere/kinetochore protein zw10-like protein OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3C3464.6e-1270.21centromere/kinetochore protein zw10 homolog OS=Cucumis melo OX=3656 GN=LOC103496... [more]
A0A6J1J9K51.0e-1172.34centromere/kinetochore protein zw10 homolog OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
Match NameE-valueIdentityDescription
AT2G32900.12.8e-0950.00centromere/kinetochore protein, putative (ZW10) [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006821.1MS006821.1mRNA