MS006800 (gene) Bitter gourd (TR) v1

Overview
NameMS006800
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold60: 530797 .. 531132 (-)
RNA-Seq ExpressionMS006800
SyntenyMS006800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAAAGTCAGTGCAGTCATCAGCCTCCAAGTTGGCTCTTCTACTCCTAGTCTGCATAGCGATTCTAGCACCAGCAGCAGCGGCAGTGGCAGCGGTGCCTACCGATCCATACCGGACCGAGAAGTTCTCTTTGTTCCGGTGCGTATCGTTTGTCTCGGAGGCGACGAAATGTGTGGTGGATGTGGTGAAGAAGGCGGTGGCTCCTCACCCTCCTTGCTGCAAAGCCATTGCTAACCTCAACGACTGCTCCTCCTCCTTTCTCAAAGACATTCCCGTCGAGGAAATGAGTTTGATTAAGACCGTTTGCGCTTTATGGGGCGTTTCAATTCCT

mRNA sequence

ATGGCGGCAAAGTCAGTGCAGTCATCAGCCTCCAAGTTGGCTCTTCTACTCCTAGTCTGCATAGCGATTCTAGCACCAGCAGCAGCGGCAGTGGCAGCGGTGCCTACCGATCCATACCGGACCGAGAAGTTCTCTTTGTTCCGGTGCGTATCGTTTGTCTCGGAGGCGACGAAATGTGTGGTGGATGTGGTGAAGAAGGCGGTGGCTCCTCACCCTCCTTGCTGCAAAGCCATTGCTAACCTCAACGACTGCTCCTCCTCCTTTCTCAAAGACATTCCCGTCGAGGAAATGAGTTTGATTAAGACCGTTTGCGCTTTATGGGGCGTTTCAATTCCT

Coding sequence (CDS)

ATGGCGGCAAAGTCAGTGCAGTCATCAGCCTCCAAGTTGGCTCTTCTACTCCTAGTCTGCATAGCGATTCTAGCACCAGCAGCAGCGGCAGTGGCAGCGGTGCCTACCGATCCATACCGGACCGAGAAGTTCTCTTTGTTCCGGTGCGTATCGTTTGTCTCGGAGGCGACGAAATGTGTGGTGGATGTGGTGAAGAAGGCGGTGGCTCCTCACCCTCCTTGCTGCAAAGCCATTGCTAACCTCAACGACTGCTCCTCCTCCTTTCTCAAAGACATTCCCGTCGAGGAAATGAGTTTGATTAAGACCGTTTGCGCTTTATGGGGCGTTTCAATTCCT

Protein sequence

MAAKSVQSSASKLALLLLVCIAILAPAAAAVAAVPTDPYRTEKFSLFRCVSFVSEATKCVVDVVKKAVAPHPPCCKAIANLNDCSSSFLKDIPVEEMSLIKTVCALWGVSIP
Homology
BLAST of MS006800 vs. NCBI nr
Match: KAE8653017.1 (hypothetical protein Csa_004564 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-24
Identity = 68/112 (60.71%), Postives = 85/112 (75.89%), Query Frame = 0

Query: 8   SSASKLAL-LLLVCIAILAPAAAA-----VAAVPTDPYRTEK-FSLFRCVSFVSEATKCV 67
           +SA+KL L L+L+CIAILA + AA      AA P+ P  TE+ FSLF C+S V +ATKCV
Sbjct: 3   TSATKLPLVLILLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCV 62

Query: 68  VDVVKKAVAPHPPCCKAIANLNDCSSSFLKDIPVEEMSLIKTVCALWGVSIP 113
           +DV+   VAPHP CC+AI+ LNDCSS+FLKDIP  +M L+K+VCA WGVSIP
Sbjct: 63  IDVLNNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVCASWGVSIP 114

BLAST of MS006800 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-24
Identity = 66/109 (60.55%), Postives = 82/109 (75.23%), Query Frame = 0

Query: 8   SSASKLALLLLVCIAILAPAAAA-----VAAVPTDPYRTEKFSLFRCVSFVSEATKCVVD 67
           S+ +KL L+LLVCIAILA +  A      AA PT    +E FSLF C+SFV +ATKCV+D
Sbjct: 4   SAITKLPLVLLVCIAILASSVTARPTIVAAATPT----SEDFSLFPCISFVPKATKCVID 63

Query: 68  VVKKAVAPHPPCCKAIANLNDCSSSFLKDIPVEEMSLIKTVCALWGVSI 112
           V+K AVAPHP CC+AI+ L+DCSS FLKDIP  +M L+K++CA WGVSI
Sbjct: 64  VLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSI 108

BLAST of MS006800 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 4.0e-24
Identity = 63/103 (61.17%), Postives = 75/103 (72.82%), Query Frame = 0

Query: 9   SASKLALLLLVCIAILAPAAAA--VAAVPTDPYRTEKFSLFRCVSFVSEATKCVVDVVKK 68
           ++ KL L+ LVCIAILA +  A   A  P DP+  E+FSL  C SF+SEAT C+VDV+K 
Sbjct: 2   ASMKLPLVFLVCIAILAVSGMAHTGALAPADPFTAEEFSLLGCTSFISEATNCMVDVMKN 61

Query: 69  AVAPHPPCCKAIANLNDCSSSFLKDIPVEEMSLIKTVCALWGV 110
           AVAPHP CCKA + LNDCSS FLK IP  +M LIK +CALWGV
Sbjct: 62  AVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV 104

BLAST of MS006800 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 4.0e-24
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query: 12  KLALLLLVCIAILAPAAAA--VAAVPTDPYRTEKFSLFRCVSFVSEATKCVVDVVKKAVA 71
           KL L+  VC+AILA +  A   AA P+DP+  EK SL  C SF+SEATKCV+DV+K AVA
Sbjct: 5   KLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMKNAVA 64

Query: 72  PHPPCCKAIANLNDCSSSFLKDIPVEEMSLIKTVCALWGV 110
           PHP CCKA + LNDCS  FLK IP  +M LIK +CALWGV
Sbjct: 65  PHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

BLAST of MS006800 vs. NCBI nr
Match: KAG6589812.1 (hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 5.2e-24
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query: 12  KLALLLLVCIAILAPAAAAVAAVPTDPYRTEKFSLFRCVSFVSEATKCVVDVVKKAVAPH 71
           KLA   LVCIAILA  A A      DP+  E FSLF C S VSE TKCVVDV+K+AVAPH
Sbjct: 2   KLAAACLVCIAILASPAMA-----PDPFAAEGFSLFGCTSAVSEMTKCVVDVMKQAVAPH 61

Query: 72  PPCCKAIANLNDCSSSFLKDIPVEEMSLIKTVCALWGVSI 112
           P CC+AI+ LN CSS FLKD+P  +M LIKTVCALWGV +
Sbjct: 62  PSCCRAISKLNRCSSVFLKDVPSADMFLIKTVCALWGVPV 96

BLAST of MS006800 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 66/109 (60.55%), Postives = 82/109 (75.23%), Query Frame = 0

Query: 8   SSASKLALLLLVCIAILAPAAAA-----VAAVPTDPYRTEKFSLFRCVSFVSEATKCVVD 67
           S+ +KL L+LLVCIAILA +  A      AA PT    +E FSLF C+SFV +ATKCV+D
Sbjct: 4   SAITKLPLVLLVCIAILASSVTARPTIVAAATPT----SEDFSLFPCISFVPKATKCVID 63

Query: 68  VVKKAVAPHPPCCKAIANLNDCSSSFLKDIPVEEMSLIKTVCALWGVSI 112
           V+K AVAPHP CC+AI+ L+DCSS FLKDIP  +M L+K++CA WGVSI
Sbjct: 64  VLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSI 108

BLAST of MS006800 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.9e-24
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query: 12  KLALLLLVCIAILAPAAAA--VAAVPTDPYRTEKFSLFRCVSFVSEATKCVVDVVKKAVA 71
           KL L+  VC+AILA +  A   AA P+DP+  EK SL  C SF+SEATKCV+DV+K AVA
Sbjct: 5   KLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMKNAVA 64

Query: 72  PHPPCCKAIANLNDCSSSFLKDIPVEEMSLIKTVCALWGV 110
           PHP CCKA + LNDCS  FLK IP  +M LIK +CALWGV
Sbjct: 65  PHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

BLAST of MS006800 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query: 12  KLALLLLVCIAILAPAAAA--VAAVPTDPYRTEKFSLFRCVSFVSEATKCVVDVVKKAVA 71
           KL L+  VC+AILA +  A   AA P+DP+  E+ SL  C SF+SEATKCV+DV+K AVA
Sbjct: 5   KLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKNAVA 64

Query: 72  PHPPCCKAIANLNDCSSSFLKDIPVEEMSLIKTVCALWGV 110
           PHP CCKA + LNDCS  FLK IP  +M LIK +CALWGV
Sbjct: 65  PHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

BLAST of MS006800 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.7e-23
Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = 0

Query: 8   SSASKLALLLLVCIAILAPAAAA-----VAAVPTDPYRTEKFSLFRCVSFVSEATKCVVD 67
           S+ +KL L+L VCIAILA +  A      AA PT    +E FSLF C+SFV +ATKCV+D
Sbjct: 4   SAITKLPLVLRVCIAILASSVTACPTIVAAATPT----SEDFSLFPCISFVPKATKCVID 63

Query: 68  VVKKAVAPHPPCCKAIANLNDCSSSFLKDIPVEEMSLIKTVCALWGVSI 112
           V+K  VAPHP CC+AI  L+DCSS FLKDIP  +M L+K++CA WGVSI
Sbjct: 64  VLKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSI 108

BLAST of MS006800 vs. ExPASy TrEMBL
Match: A0A5A7U904 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00650 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.4e-22
Identity = 63/115 (54.78%), Postives = 74/115 (64.35%), Query Frame = 0

Query: 1   MAAKSVQSSASKLALLLLVCIAILAPAA----AAVAAVPTDPYRTEKFSLFRCVSFVSEA 60
           MAAKS+++S  KL L+ L C AI    A    AAVA    DP+ TE  S F C SFV EA
Sbjct: 1   MAAKSLKTSTMKLILIFLCCTAIFTLPAEAMKAAVAPTQPDPFLTEDISFFPCFSFVPEA 60

Query: 61  TKCVVDVVKKAVAPHPPCCKAIANLNDCSSSFLKDIPVEEMSLIKTVCALWGVSI 112
           TKC++DV K  +APHP CCKAI+ L  CSSSF   IP  +M LIK+VC  WG SI
Sbjct: 61  TKCMIDVFKHPIAPHPTCCKAISKLKSCSSSFFNGIPSADMILIKSVCTSWGASI 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8653017.11.8e-2460.71hypothetical protein Csa_004564 [Cucumis sativus][more]
TYK10345.12.3e-2460.55hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa][more]
KAE8653021.14.0e-2461.17hypothetical protein Csa_004567 [Cucumis sativus][more]
KAA0050078.14.0e-2462.00hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa][more]
KAG6589812.15.2e-2465.00hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CFS61.1e-2460.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4831.9e-2462.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CG415.6e-2461.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U9B03.7e-2358.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U9042.4e-2254.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006800.1MS006800.1mRNA