MS006795 (gene) Bitter gourd (TR) v1

Overview


Name	MS006795
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	scaffold60: 498002 .. 498589 (-)
RNA-Seq Expression	MS006795
Synteny	MS006795

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTCCTCCACAGCCGCCCCCATCGGGCCGCTCGAGGGTATTGCGGTGTGTCGCCCTGGTGCTTCTGGCATTGATCGTACTCGTAGGCCTTGCTGTGCTCATCATTTGGCTAACGGTTAGGCCGAAGCGTCTAAGCTACACAGTTGAAAGCGCCTCGGTTCAAAACTTCGACCTGAGCAACACTCAACTCAATGCCTCCTTTAACTTTAGGGTTAGAGCATACAATCCCAACTCTAGAGTCTCGGTTTACTACGATAAAATCTTGGTCACGGTCGGGTTTGGCGATCAAGACTTGGCCTACGGCACCATCAATCCTTTCTACCAACCTCACAAAGGCGTCACGCGCTTGGACATCAACCCCGCCGCTCAAAACGTTCCATTGTACAACTCCGTATCCAAGGATCTAGGGCTCGAGAAGGCGGCCGGAGAGATGGATTTGGATCTGTGGATCAAGGCCAAAATCAGGTTCAAGGTCGGGATATGGAAGTCCGGCCACCAGACGCTCCGAATTCATTGTTCGCCGGTCATTATTTACCTCTCTAAAAGTAAGCCTTTCAACGAGACTACTTGCTTTGCAGAAGTC

mRNA sequence

ATGGCAGGTCCTCCACAGCCGCCCCCATCGGGCCGCTCGAGGGTATTGCGGTGTGTCGCCCTGGTGCTTCTGGCATTGATCGTACTCGTAGGCCTTGCTGTGCTCATCATTTGGCTAACGGTTAGGCCGAAGCGTCTAAGCTACACAGTTGAAAGCGCCTCGGTTCAAAACTTCGACCTGAGCAACACTCAACTCAATGCCTCCTTTAACTTTAGGGTTAGAGCATACAATCCCAACTCTAGAGTCTCGGTTTACTACGATAAAATCTTGGTCACGGTCGGGTTTGGCGATCAAGACTTGGCCTACGGCACCATCAATCCTTTCTACCAACCTCACAAAGGCGTCACGCGCTTGGACATCAACCCCGCCGCTCAAAACGTTCCATTGTACAACTCCGTATCCAAGGATCTAGGGCTCGAGAAGGCGGCCGGAGAGATGGATTTGGATCTGTGGATCAAGGCCAAAATCAGGTTCAAGGTCGGGATATGGAAGTCCGGCCACCAGACGCTCCGAATTCATTGTTCGCCGGTCATTATTTACCTCTCTAAAAGTAAGCCTTTCAACGAGACTACTTGCTTTGCAGAAGTC

Coding sequence (CDS)

ATGGCAGGTCCTCCACAGCCGCCCCCATCGGGCCGCTCGAGGGTATTGCGGTGTGTCGCCCTGGTGCTTCTGGCATTGATCGTACTCGTAGGCCTTGCTGTGCTCATCATTTGGCTAACGGTTAGGCCGAAGCGTCTAAGCTACACAGTTGAAAGCGCCTCGGTTCAAAACTTCGACCTGAGCAACACTCAACTCAATGCCTCCTTTAACTTTAGGGTTAGAGCATACAATCCCAACTCTAGAGTCTCGGTTTACTACGATAAAATCTTGGTCACGGTCGGGTTTGGCGATCAAGACTTGGCCTACGGCACCATCAATCCTTTCTACCAACCTCACAAAGGCGTCACGCGCTTGGACATCAACCCCGCCGCTCAAAACGTTCCATTGTACAACTCCGTATCCAAGGATCTAGGGCTCGAGAAGGCGGCCGGAGAGATGGATTTGGATCTGTGGATCAAGGCCAAAATCAGGTTCAAGGTCGGGATATGGAAGTCCGGCCACCAGACGCTCCGAATTCATTGTTCGCCGGTCATTATTTACCTCTCTAAAAGTAAGCCTTTCAACGAGACTACTTGCTTTGCAGAAGTC

Protein sequence

MAGPPQPPPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDLSNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLDINPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIYLSKSKPFNETTCFAEV

Homology

[Close]

BLAST of MS006795 vs. NCBI nr
Match: XP_022152939.1 (uncharacterized protein At1g08160 [Momordica charantia])

HSP 1 Score: 392.9 bits (1008), Expect = 1.6e-105
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MAGPPQPPPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDL 60
           MAGPPQPPPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDL
Sbjct: 1   MAGPPQPPPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDL 60

Query: 61  SNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLDI 120
           SNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLDI
Sbjct: 61  SNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLDI 120

Query: 121 NPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIY 180
           NPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIY
Sbjct: 121 NPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIY 180

Query: 181 LSKSKPFNETTCFAEV 197
           LSKSKPFNETTCFAEV
Sbjct: 181 LSKSKPFNETTCFAEV 196

[Close]

BLAST of MS006795 vs. NCBI nr
Match: XP_038894942.1 (uncharacterized protein At1g08160-like [Benincasa hispida])

HSP 1 Score: 295.0 bits (754), Expect = 4.6e-76
Identity = 144/197 (73.10%), Postives = 171/197 (86.80%), Query Frame = 0


Query: 1   MAGPPQPPP-SGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFD 60
           MAGPPQPPP +G SR+LR V + ++ALI+LVGLAVLIIWLT+RPKRLSYTVESASV NFD
Sbjct: 1   MAGPPQPPPRAGPSRILRFVLMFIVALIILVGLAVLIIWLTIRPKRLSYTVESASVHNFD 60

Query: 61  LSNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLD 120
           +++TQLNASF+F VRAYNPN RV++YYD I  TVGFGDQDLA+G ++PFYQPHK    L+
Sbjct: 61  MTSTQLNASFSFGVRAYNPNKRVAIYYDSITATVGFGDQDLAFGVLSPFYQPHKDERWLN 120

Query: 121 INPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVII 180
           I+  AQN  L++SVSKDL LE+AAGEMDLDLWIKA+IRFKVG+WKS H+TLRI CSPVI+
Sbjct: 121 IHLDAQNFLLHDSVSKDLALERAAGEMDLDLWIKARIRFKVGVWKSAHRTLRIRCSPVIV 180

Query: 181 YLSKSKPFNETTCFAEV 197
           YLSKS+ F +TTCF EV
Sbjct: 181 YLSKSQTFKKTTCFTEV 197

[Close]

BLAST of MS006795 vs. NCBI nr
Match: XP_008464346.1 (PREDICTED: uncharacterized protein At1g08160 [Cucumis melo] >KAA0032608.1 uncharacterized protein E6C27_scaffold43053G00810 [Cucumis melo var. makuwa] >TYK20878.1 uncharacterized protein E5676_scaffold284G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 295.0 bits (754), Expect = 4.6e-76
Identity = 146/197 (74.11%), Postives = 169/197 (85.79%), Query Frame = 0


Query: 1   MAGPPQPPP-SGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFD 60
           MAGPPQPP  +G SR+LR V + L+ALI+LVGLAVLIIWLT+RPKRLSYTVESA V NFD
Sbjct: 1   MAGPPQPPSRAGPSRILRFVIIFLVALIILVGLAVLIIWLTIRPKRLSYTVESAEVHNFD 60

Query: 61  LSNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLD 120
           ++NTQLNASF+F VRAYNPN RVSVYYD I  TVGFGDQDLA+G ++PFYQPHK    L+
Sbjct: 61  MTNTQLNASFSFGVRAYNPNKRVSVYYDSITATVGFGDQDLAFGVLSPFYQPHKDEQWLN 120

Query: 121 INPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVII 180
           I+  AQN  L++SVSKDL LE++AGEMDLDLWIKA+IRFKVG+WKS H+TLRI CSPVI+
Sbjct: 121 IHLNAQNFLLHDSVSKDLALERSAGEMDLDLWIKARIRFKVGVWKSAHRTLRIRCSPVIV 180

Query: 181 YLSKSKPFNETTCFAEV 197
           YLSKSK F +TTCF EV
Sbjct: 181 YLSKSKTFKKTTCFTEV 197

[Close]

BLAST of MS006795 vs. NCBI nr
Match: KAG7020792.1 (hypothetical protein SDJN02_17480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.3 bits (739), Expect = 2.5e-74
Identity = 146/197 (74.11%), Postives = 164/197 (83.25%), Query Frame = 0


Query: 1   MAGPPQ-PPPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFD 60
           MAGPPQ      RS +LR V LVL+ALIVLVGL VLIIWLTVRPKRLSYTVESA+V NFD
Sbjct: 1   MAGPPQLSSRPARSNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFD 60

Query: 61  LSNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLD 120
           +S TQLNASFNF V+AYNPN  VSVYYD + VTVGFGDQDLA+G I PFYQPHK VT L+
Sbjct: 61  MSTTQLNASFNFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLN 120

Query: 121 INPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVII 180
           ++  A+N  L++SVSKDL LEKAAGEMDLDLWIKA+IRFKVG+WKSGH+TLRI CSPVI+
Sbjct: 121 MDLNAKNFLLHDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIV 180

Query: 181 YLSKSKPFNETTCFAEV 197
           YLSK K F  T CF E+
Sbjct: 181 YLSKDKEFKRTACFTEI 197

[Close]

BLAST of MS006795 vs. NCBI nr
Match: KAE8652783.1 (hypothetical protein Csa_022856 [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 3.3e-74
Identity = 144/197 (73.10%), Postives = 168/197 (85.28%), Query Frame = 0


Query: 1   MAGPPQP-PPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFD 60
           MAGPPQP   SG SR+LR V + L+ALI+LVGLAVLIIWLTVRPKRLSYTVESA V NFD
Sbjct: 27  MAGPPQPLSRSGPSRILRFVIIFLVALIILVGLAVLIIWLTVRPKRLSYTVESAEVHNFD 86

Query: 61  LSNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLD 120
           +++TQLNASF+F VRAYNPN RVSVYYD I  TVGFGDQDL++G ++PFYQPHK    L+
Sbjct: 87  MTDTQLNASFSFGVRAYNPNKRVSVYYDSITATVGFGDQDLSFGVLSPFYQPHKNEQWLN 146

Query: 121 INPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVII 180
           I+  AQN  L++SVSK+L LE++AGEMDLDLWIKA+IRFKVG+WKS H+TLRI CSPVI+
Sbjct: 147 IHLNAQNFLLHDSVSKELALERSAGEMDLDLWIKARIRFKVGVWKSAHRTLRIRCSPVIV 206

Query: 181 YLSKSKPFNETTCFAEV 197
           YLSKSK F +TTCF EV
Sbjct: 207 YLSKSKTFKKTTCFTEV 223

[Close]

BLAST of MS006795 vs. ExPASy Swiss-Prot
Match: Q8VZ13 (Uncharacterized protein At1g08160 OS=Arabidopsis thaliana OX=3702 GN=At1g08160 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.0e-30
Identity = 70/181 (38.67%), Postives = 116/181 (64.09%), Query Frame = 0


Query: 6   QPPPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDLSNT-- 65
           QP P  R   + C+ + L+ L +LVGLA+LI +LT+RPKRL YTVE+ASVQ F + N   
Sbjct: 27  QPLPGRRMNPVLCIIVALVLLGLLVGLAILITYLTLRPKRLIYTVEAASVQEFAIGNNDD 86

Query: 66  QLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLDINPA 125
            +NA F++ +++YNP   VSV Y  + ++    +Q +A+  I+PF Q  K  TR++    
Sbjct: 87  HINAKFSYVIKSYNPEKHVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLV 146

Query: 126 AQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIYLSK 185
           + NV L    ++DL  EK+ G ++++++I A++ +K  I++S  +TL+  C+PV+I ++ 
Sbjct: 147 SHNVALSKFNARDLRAEKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPVMINVTS 206

[Close]

BLAST of MS006795 vs. ExPASy Swiss-Prot
Match: Q9SJ52 (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-19
Identity = 63/204 (30.88%), Postives = 104/204 (50.98%), Query Frame = 0


Query: 3   GPPQPPPS-------GRSRVLRCVAL-----VLLALIVLVGLAVLIIWLTVRPKRLSYTV 62
           GP  PPP+       G  R   C  L     V+++LIV++G+A LI WL VRP+ + + V
Sbjct: 13  GPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHV 72

Query: 63  ESASVQNFDLSNTQ--LNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPF 122
             AS+  FD ++    L  +    V   NPN R+ +YYD+I     +  +  +  T+ PF
Sbjct: 73  TDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPF 132

Query: 123 YQPHKGVTRLDINPAAQNVPLYNS-VSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGH 182
           YQ HK  T L      QN+ ++N+  S+ L  E+ +G  ++++  + ++RFK+G  K   
Sbjct: 133 YQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRR 192

Query: 183 QTLRIHCSPVIIYLSKSKPFNETT 192
              ++ C  + + LS S     T+
Sbjct: 193 IKPKVDCDDLRLPLSTSNGTTTTS 216

[Close]

BLAST of MS006795 vs. ExPASy Swiss-Prot
Match: Q9FNH6 (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-17
Identity = 63/186 (33.87%), Postives = 91/186 (48.92%), Query Frame = 0


Query: 15  VLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDL---SNTQLNASFNF 74
           +L  +  +L+ + VL+G+A LIIWL  RP  + + V  A +  F L   +N + N   NF
Sbjct: 44  ILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNF 103

Query: 75  RVRAYNPNSRVSVYYDKILVTVGFGDQDLAY-GTINPFYQPHKGVTRLDINPAAQNVPLY 134
            +R  NPN R+ VYYD+I V   +GDQ       I+ FYQ HK  T +      Q + L 
Sbjct: 104 TIR--NPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLL 163

Query: 135 N-SVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIYLSKSKP--- 193
           +    KDL  +  +    +D  ++ KIRFK G+ KS     +I C   +   S S     
Sbjct: 164 DGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFV 223

[Close]

BLAST of MS006795 vs. ExPASy Swiss-Prot
Match: Q9FI03 (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-16
Identity = 40/153 (26.14%), Postives = 83/153 (54.25%), Query Frame = 0


Query: 32  LAVLIIWLTVRPKRLSYTVESASVQNFDLSNTQ---LNASFNFRVRAYNPNSRVSVYYDK 91
           L + ++WL + P+R  +++  A + + +L+ +    LN+S    + + NPN +V +YYDK
Sbjct: 40  LIIFLVWLILHPERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPNKKVGIYYDK 99

Query: 92  ILVTVGF-GDQDLAYGTINPFYQPHKGVTRLDINPAAQNVPLYNSVSKDLGLEKAAGEMD 151
           +LV   + G Q  +  ++ PFYQ H+ +  L        +P+  S    +  E++ G++ 
Sbjct: 100 LLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQISRERSTGKII 159

Query: 152 LDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIY 181
           + + +  K+R+K+G W SG     ++C  ++ +
Sbjct: 160 IGMKMDGKLRWKIGTWVSGAYRFNVNCLAIVAF 192

[Close]

BLAST of MS006795 vs. ExPASy Swiss-Prot
Match: Q9SRN1 (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.6e-16
Identity = 54/172 (31.40%), Postives = 86/172 (50.00%), Query Frame = 0


Query: 15  VLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDLS-NTQLNASFNFRV 74
           +L  +  +L+A+ V++G+A LI+WL  RP  + + V  A++  F    N  L+ S +   
Sbjct: 51  ILSLICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNF 110

Query: 75  RAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLDINPAAQN-VPLYNS 134
              NPN RV VYYD+  V+  +GDQ      ++ FYQ HK  T +      QN V L + 
Sbjct: 111 TIRNPNQRVGVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVVLGDG 170

Query: 135 VSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIYLSKS 185
              DL  ++ +G   ++  ++  +RFK    KS     +I C  + I L  S
Sbjct: 171 ARTDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSS 222

[Close]

BLAST of MS006795 vs. ExPASy TrEMBL
Match: A0A6J1DHJ8 (uncharacterized protein At1g08160 OS=Momordica charantia OX=3673 GN=LOC111020551 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 7.9e-106
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MAGPPQPPPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDL 60
           MAGPPQPPPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDL
Sbjct: 1   MAGPPQPPPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDL 60

Query: 61  SNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLDI 120
           SNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLDI
Sbjct: 61  SNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLDI 120

Query: 121 NPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIY 180
           NPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIY
Sbjct: 121 NPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIY 180

Query: 181 LSKSKPFNETTCFAEV 197
           LSKSKPFNETTCFAEV
Sbjct: 181 LSKSKPFNETTCFAEV 196

[Close]

BLAST of MS006795 vs. ExPASy TrEMBL
Match: A0A5D3DBK2 (LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00070 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.2e-76
Identity = 146/197 (74.11%), Postives = 169/197 (85.79%), Query Frame = 0


Query: 1   MAGPPQPPP-SGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFD 60
           MAGPPQPP  +G SR+LR V + L+ALI+LVGLAVLIIWLT+RPKRLSYTVESA V NFD
Sbjct: 1   MAGPPQPPSRAGPSRILRFVIIFLVALIILVGLAVLIIWLTIRPKRLSYTVESAEVHNFD 60

Query: 61  LSNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLD 120
           ++NTQLNASF+F VRAYNPN RVSVYYD I  TVGFGDQDLA+G ++PFYQPHK    L+
Sbjct: 61  MTNTQLNASFSFGVRAYNPNKRVSVYYDSITATVGFGDQDLAFGVLSPFYQPHKDEQWLN 120

Query: 121 INPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVII 180
           I+  AQN  L++SVSKDL LE++AGEMDLDLWIKA+IRFKVG+WKS H+TLRI CSPVI+
Sbjct: 121 IHLNAQNFLLHDSVSKDLALERSAGEMDLDLWIKARIRFKVGVWKSAHRTLRIRCSPVIV 180

Query: 181 YLSKSKPFNETTCFAEV 197
           YLSKSK F +TTCF EV
Sbjct: 181 YLSKSKTFKKTTCFTEV 197

[Close]

BLAST of MS006795 vs. ExPASy TrEMBL
Match: A0A1S3CLP6 (uncharacterized protein At1g08160 OS=Cucumis melo OX=3656 GN=LOC103502251 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.2e-76
Identity = 146/197 (74.11%), Postives = 169/197 (85.79%), Query Frame = 0


Query: 1   MAGPPQPPP-SGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFD 60
           MAGPPQPP  +G SR+LR V + L+ALI+LVGLAVLIIWLT+RPKRLSYTVESA V NFD
Sbjct: 1   MAGPPQPPSRAGPSRILRFVIIFLVALIILVGLAVLIIWLTIRPKRLSYTVESAEVHNFD 60

Query: 61  LSNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLD 120
           ++NTQLNASF+F VRAYNPN RVSVYYD I  TVGFGDQDLA+G ++PFYQPHK    L+
Sbjct: 61  MTNTQLNASFSFGVRAYNPNKRVSVYYDSITATVGFGDQDLAFGVLSPFYQPHKDEQWLN 120

Query: 121 INPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVII 180
           I+  AQN  L++SVSKDL LE++AGEMDLDLWIKA+IRFKVG+WKS H+TLRI CSPVI+
Sbjct: 121 IHLNAQNFLLHDSVSKDLALERSAGEMDLDLWIKARIRFKVGVWKSAHRTLRIRCSPVIV 180

Query: 181 YLSKSKPFNETTCFAEV 197
           YLSKSK F +TTCF EV
Sbjct: 181 YLSKSKTFKKTTCFTEV 197

[Close]

BLAST of MS006795 vs. ExPASy TrEMBL
Match: A0A0A0LVK3 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G132720 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.6e-74
Identity = 144/197 (73.10%), Postives = 168/197 (85.28%), Query Frame = 0


Query: 1   MAGPPQP-PPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFD 60
           MAGPPQP   SG SR+LR V + L+ALI+LVGLAVLIIWLTVRPKRLSYTVESA V NFD
Sbjct: 1   MAGPPQPLSRSGPSRILRFVIIFLVALIILVGLAVLIIWLTVRPKRLSYTVESAEVHNFD 60

Query: 61  LSNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLD 120
           +++TQLNASF+F VRAYNPN RVSVYYD I  TVGFGDQDL++G ++PFYQPHK    L+
Sbjct: 61  MTDTQLNASFSFGVRAYNPNKRVSVYYDSITATVGFGDQDLSFGVLSPFYQPHKNEQWLN 120

Query: 121 INPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVII 180
           I+  AQN  L++SVSK+L LE++AGEMDLDLWIKA+IRFKVG+WKS H+TLRI CSPVI+
Sbjct: 121 IHLNAQNFLLHDSVSKELALERSAGEMDLDLWIKARIRFKVGVWKSAHRTLRIRCSPVIV 180

Query: 181 YLSKSKPFNETTCFAEV 197
           YLSKSK F +TTCF EV
Sbjct: 181 YLSKSKTFKKTTCFTEV 197

[Close]

BLAST of MS006795 vs. ExPASy TrEMBL
Match: A0A6J1FH28 (uncharacterized protein At1g08160 OS=Cucurbita moschata OX=3662 GN=LOC111443929 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.6e-74
Identity = 146/197 (74.11%), Postives = 163/197 (82.74%), Query Frame = 0


Query: 1   MAGPPQ-PPPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFD 60
           MAGPPQ      R  +LR V LVL+ALIVLVGL VLIIWLTVRPKRLSYTVESA+V NFD
Sbjct: 1   MAGPPQLSSRPARPNILRYVILVLVALIVLVGLVVLIIWLTVRPKRLSYTVESAAVHNFD 60

Query: 61  LSNTQLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLD 120
           +S TQLNASFNF V+AYNPN  VSVYYD + VTVGFGDQDLA+G I PFYQPHK VT L+
Sbjct: 61  MSTTQLNASFNFGVKAYNPNRHVSVYYDHVTVTVGFGDQDLAFGVIKPFYQPHKDVTWLN 120

Query: 121 INPAAQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVII 180
           ++  A+N  L++SVSKDL LEKAAGEMDLDLWIKA+IRFKVG+WKSGH+TLRI CSPVI+
Sbjct: 121 MDLNAKNFLLHDSVSKDLALEKAAGEMDLDLWIKARIRFKVGVWKSGHRTLRIRCSPVIV 180

Query: 181 YLSKSKPFNETTCFAEV 197
           YLSK K F  T CF EV
Sbjct: 181 YLSKDKEFKRTACFTEV 197

[Close]

BLAST of MS006795 vs. TAIR 10
Match: AT5G22870.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-40
Identity = 79/189 (41.80%), Postives = 125/189 (66.14%), Query Frame = 0


Query: 9   PSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDLSN-TQLNA 68
           P  R  ++  + LV+L LI +  +  LI WL  +PK+L YTVE+ASVQNF+L+N   ++A
Sbjct: 19  PLRRPSLICYIFLVILTLIFMAAVGFLITWLETKPKKLRYTVENASVQNFNLTNDNHMSA 78

Query: 69  SFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLDINPAAQNV 128
           +F F ++++NPN R+SVYY  + + V F DQ LA+ T+ PF+QP   V ++D    A+NV
Sbjct: 79  TFQFTIQSHNPNHRISVYYSSVEIFVKFKDQTLAFDTVEPFHQPRMNVKQIDETLIAENV 138

Query: 129 PLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIYLSKSKPF 188
            +  S  KDL  + + G++  ++++KA++RFKVGIWKS H+T +I CS V + LS+    
Sbjct: 139 AVSKSNGKDLRSQNSLGKIGFEVFVKARVRFKVGIWKSSHRTAKIKCSHVTVSLSQPNKS 198

Query: 189 NETTCFAEV 197
             ++C A++
Sbjct: 199 QNSSCDADI 207

[Close]

BLAST of MS006795 vs. TAIR 10
Match: AT1G08160.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 134.8 bits (338), Expect = 7.5e-32
Identity = 70/181 (38.67%), Postives = 116/181 (64.09%), Query Frame = 0


Query: 6   QPPPSGRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDLSNT-- 65
           QP P  R   + C+ + L+ L +LVGLA+LI +LT+RPKRL YTVE+ASVQ F + N   
Sbjct: 27  QPLPGRRMNPVLCIIVALVLLGLLVGLAILITYLTLRPKRLIYTVEAASVQEFAIGNNDD 86

Query: 66  QLNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPFYQPHKGVTRLDINPA 125
            +NA F++ +++YNP   VSV Y  + ++    +Q +A+  I+PF Q  K  TR++    
Sbjct: 87  HINAKFSYVIKSYNPEKHVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLV 146

Query: 126 AQNVPLYNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIYLSK 185
           + NV L    ++DL  EK+ G ++++++I A++ +K  I++S  +TL+  C+PV+I ++ 
Sbjct: 147 SHNVALSKFNARDLRAEKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPVMINVTS 206

[Close]

BLAST of MS006795 vs. TAIR 10
Match: AT2G35980.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-20
Identity = 63/204 (30.88%), Postives = 104/204 (50.98%), Query Frame = 0


Query: 3   GPPQPPPS-------GRSRVLRCVAL-----VLLALIVLVGLAVLIIWLTVRPKRLSYTV 62
           GP  PPP+       G  R   C  L     V+++LIV++G+A LI WL VRP+ + + V
Sbjct: 13  GPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHV 72

Query: 63  ESASVQNFDLSNTQ--LNASFNFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGTINPF 122
             AS+  FD ++    L  +    V   NPN R+ +YYD+I     +  +  +  T+ PF
Sbjct: 73  TDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPF 132

Query: 123 YQPHKGVTRLDINPAAQNVPLYNS-VSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGH 182
           YQ HK  T L      QN+ ++N+  S+ L  E+ +G  ++++  + ++RFK+G  K   
Sbjct: 133 YQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRR 192

Query: 183 QTLRIHCSPVIIYLSKSKPFNETT 192
              ++ C  + + LS S     T+
Sbjct: 193 IKPKVDCDDLRLPLSTSNGTTTTS 216

[Close]

BLAST of MS006795 vs. TAIR 10
Match: AT5G53730.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-17
Identity = 40/153 (26.14%), Postives = 83/153 (54.25%), Query Frame = 0


Query: 32  LAVLIIWLTVRPKRLSYTVESASVQNFDLSNTQ---LNASFNFRVRAYNPNSRVSVYYDK 91
           L + ++WL + P+R  +++  A + + +L+ +    LN+S    + + NPN +V +YYDK
Sbjct: 40  LIIFLVWLILHPERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPNKKVGIYYDK 99

Query: 92  ILVTVGF-GDQDLAYGTINPFYQPHKGVTRLDINPAAQNVPLYNSVSKDLGLEKAAGEMD 151
           +LV   + G Q  +  ++ PFYQ H+ +  L        +P+  S    +  E++ G++ 
Sbjct: 100 LLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQISRERSTGKII 159

Query: 152 LDLWIKAKIRFKVGIWKSGHQTLRIHCSPVIIY 181
           + + +  K+R+K+G W SG     ++C  ++ +
Sbjct: 160 IGMKMDGKLRWKIGTWVSGAYRFNVNCLAIVAF 192

[Close]

BLAST of MS006795 vs. TAIR 10
Match: AT3G52470.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-15
Identity = 52/172 (30.23%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 11  GRSRVLRCVALVLLALIVLVGLAVLIIWLTVRPKRLSYTVESASVQNFDLSNTQ-LNASF 70
           G+  V+R +   ++A IV+V + + ++W+ +RP +  + ++ A+V  F+LS    L ++F
Sbjct: 11  GKEVVVRKLCAAIIAFIVIVLITIFLVWVILRPTKPRFVLQDATVYAFNLSQPNLLTSNF 70

Query: 71  NFRVRAYNPNSRVSVYYDKILVTVGFGDQDLAYGT-INPFYQPHKGVTRLDINPAAQNVP 130
              + + NPNS++ +YYD++ V   + +Q +   T I P YQ HK V           VP
Sbjct: 71  QVTIASRNPNSKIGIYYDRLHVYATYMNQQITLRTAIPPTYQGHKEVNVWSPFVYGTAVP 130

Query: 131 L--YNSVSKDLGLEKAAGEMDLDLWIKAKIRFKVGIWKSGHQTLRIHCSPVI 179
           +  YNSV+  LG EK  G + L +     +R+KV    +G   + + C   I
Sbjct: 131 IAPYNSVA--LGEEKDRGFVGLMIRADGTVRWKVRTLITGKYHIHVRCQAFI 180

The following BLAST results are available for this feature:

BLAST of MS006795 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152939.1	1.6e-105	100.00	uncharacterized protein At1g08160 [Momordica charantia]	[more]
XP_038894942.1	4.6e-76	73.10	uncharacterized protein At1g08160-like [Benincasa hispida]	[more]
XP_008464346.1	4.6e-76	74.11	PREDICTED: uncharacterized protein At1g08160 [Cucumis melo] >KAA0032608.1 unchar...	[more]
KAG7020792.1	2.5e-74	74.11	hypothetical protein SDJN02_17480, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8652783.1	3.3e-74	73.10	hypothetical protein Csa_022856 [Cucumis sativus]	[more]

BLAST of MS006795 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZ13	1.0e-30	38.67	Uncharacterized protein At1g08160 OS=Arabidopsis thaliana OX=3702 GN=At1g08160 P...	[more]
Q9SJ52	2.4e-19	30.88	NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1	[more]
Q9FNH6	8.6e-17	33.87	NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1	[more]
Q9FI03	1.9e-16	26.14	NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1	[more]
Q9SRN1	5.6e-16	31.40	NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1	[more]

BLAST of MS006795 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHJ8	7.9e-106	100.00	uncharacterized protein At1g08160 OS=Momordica charantia OX=3673 GN=LOC111020551...	[more]
A0A5D3DBK2	2.2e-76	74.11	LEA_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CLP6	2.2e-76	74.11	uncharacterized protein At1g08160 OS=Cucumis melo OX=3656 GN=LOC103502251 PE=4 S...	[more]
A0A0A0LVK3	1.6e-74	73.10	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G132720 PE=4 ...	[more]
A0A6J1FH28	3.6e-74	74.11	uncharacterized protein At1g08160 OS=Cucurbita moschata OX=3662 GN=LOC111443929 ...	[more]

BLAST of MS006795 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22870.1	1.1e-40	41.80	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G08160.1	7.5e-32	38.67	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G35980.1	1.7e-20	30.88	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT5G53730.1	1.4e-17	26.14	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G52470.1	2.8e-15	30.23	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 72..174 e-value: 1.6E-15 score: 57.5
None	No IPR available	GENE3D	2.60.40.1820		coord: 41..173 e-value: 2.1E-6 score: 29.6
None	No IPR available	PANTHER	PTHR31852:SF5	GB\|AAF18257.1	coord: 9..195
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 9..195
None	No IPR available	SUPERFAMILY	117070	LEA14-like	coord: 35..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006795.1	MS006795.1	mRNA