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MS006790 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACTACAGCTTAGCAGCGCTGAAGGTTCTGTGCGCGCAGCTCACCGGCGCCCGCCCAACGCCGTCGCAGCACGCCGCCACTCTCGGCGGCATTCTCTTCCAGCGCGCCTGGCTTCAGGTCCTCTCTTCCTCTTCTTTATCCTCCTTTCTTTTCCTTCTCCGATTCTCAGAATCTCTCTAATCACACCTCTACGGGCAGGGGATTTTGGTCTCCGTCGACAAACACAACGCCAGATTGGTTCTCGACGACGGCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGATTTCCGCCTCCGCCCTTGGAACCTCGGTACACTTTCCCATTAAATTTTCAATTTATCTCATCCAACAAAGTTTTACAAGTTCTACGCCTCGCTCTTTCCTTCTGCTTTTTTTTTTTTTTTTTTTAGGTTAAAATTTCTCTCGCTTTGTTCGTACAGGGATGTATGTGATGGTTGTTGGAGCATTTGTCATCCGGCCGAATGAGCCGCCGATTATTGGGGTGAGAAGAATTTAATCGATGTTTTGTTTTTCCCCTGATTCGTCTTTTCTTGTAAAGAGAAAATGGATTGAATACCTAAAGCATCACTGTACCAATTTGTTGTGATGAAATGAAATGTTGTTTTTAATTGTAACTTTTGCTTACCTAGTTCTCTTCACAATTAGTCATTTCCTTGGTTGAAAATTCTTGAACACAAAAGAGGTTGATGGATGGTTGTTGAATTCTTGAACTGCATTTTATTTTGGACACTTTTGCATGACATTGTTGCTGTTTTTGCTTTATTTTATACATTAGATGAGGTTTCTTCAGCTGCATCAGCTGTTTTTTTCATGAGGCCTATGATAAAGTTGAGACAGAAGCAAGAGGCCAGAATATTGAGAAAGTGTTTTTTGTTTACCTTGTTTTCATGTTTCCTATATATATATATATATGTATACATACATACATACATACATTAAGAGAGAGAAACAAAAGAGATAACAATCTAAGGACGAGGGACAAGGCGTCCCTCTCCAAAAAACTAGCAGATAGAGCTCCCCAATCCTGTATAATCATTCTGTAATTACAAAAAAATTTTCTGTTCCTATGACACCACTACGACGCCGTAGTATGAACACTATCACAAAAAAGAATCAAGAGAGTTAGCTTTATCCTCGAAAGACCGAAGATTCCTTTCTAACCACACATGCCACAAAAAAGCTCTAAAAGCACAATTCCACAGCTATTTAGTCTTTCCTTTAAAATACCACCCTTGAACACACTCTGAGATCCAGTCTTCAACATTGTATGGCATGCAAGAAGAAAGGGCAAAAAACTTAGCAGAAAGTGATGTTTCCTATACTCTCCATATGGTTTGAGTTTTTATGCTCTCTTCATATTTTTATGGGTGTAGCAAATAAGCCAACTGATATAGAAGCATCTTGGTGGATAATTCAGTTTTGTCAGATGTTTCTTTTACTTTTCAGTAAAATTGCTATTGCTATCATTGGGATGAGATGAGATGTTTGACTCCTCTTAATTTCTAGCAAGTTTTGTATCAAAACACTTTCAACAATTTTAGCTGTCTTTATCACTCTTTTCACTCCTTTATTTCTACCATATCTTCATGTGCTGGTGTTCAACTTTTAATTGTAGTGTTTTGTTGCATCGGCATTTAACATCCCATGTGCTGGTGATTAACTTTATAAGGTGCATTATTGTCCAACAGCCCAATTTTCACTAAATTCCTTACCATGTCTAATACTTAGGAAACACAATGTTGATAACTTAAGAGTTTCAATATCTACCATCGAGGAGAACTTCAGTTTGTTAATTTTATGATTTTATGTTTGCATTAGGTCCACAAGATTGTTGATCTTTCAGAGTTTCCTAGTCGGGAGGCGATGTGGTACCTCGAAGTCATGGAAGCATACAAAATGTTCTATGAACCCCTGATTGAAGAATTTTTG ATGGACTACAGCTTAGCAGCGCTGAAGGTTCTGTGCGCGCAGCTCACCGGCGCCCGCCCAACGCCGTCGCAGCACGCCGCCACTCTCGGCGGCATTCTCTTCCAGCGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAACACAACGCCAGATTGGTTCTCGACGACGGCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGATTTCCGCCTCCGCCCTTGGAACCTCGGGATGTATGTGATGGTTGTTGGAGCATTTGTCATCCGGCCGAATGAGCCGCCGATTATTGGGGTCCACAAGATTGTTGATCTTTCAGAGTTTCCTAGTCGGGAGGCGATGTGGTACCTCGAAGTCATGGAAGCATACAAAATGTTCTATGAACCCCTGATTGAAGAATTTTTG ATGGACTACAGCTTAGCAGCGCTGAAGGTTCTGTGCGCGCAGCTCACCGGCGCCCGCCCAACGCCGTCGCAGCACGCCGCCACTCTCGGCGGCATTCTCTTCCAGCGCGCCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAAACACAACGCCAGATTGGTTCTCGACGACGGCACCGGCACCGTCGAGCTCTCCCTCTCTCGCGATTTCCGCCTCCGCCCTTGGAACCTCGGGATGTATGTGATGGTTGTTGGAGCATTTGTCATCCGGCCGAATGAGCCGCCGATTATTGGGGTCCACAAGATTGTTGATCTTTCAGAGTTTCCTAGTCGGGAGGCGATGTGGTACCTCGAAGTCATGGAAGCATACAAAATGTTCTATGAACCCCTGATTGAAGAATTTTTG MDYSLAALKVLCAQLTGARPTPSQHAATLGGILFQRAWLQGILVSVDKHNARLVLDDGTGTVELSLSRDFRLRPWNLGMYVMVVGAFVIRPNEPPIIGVHKIVDLSEFPSREAMWYLEVMEAYKMFYEPLIEEFL Homology
BLAST of MS006790 vs. NCBI nr
Match: XP_022152884.1 (recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia] >XP_022152885.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia]) HSP 1 Score: 275.0 bits (702), Expect = 3.4e-70 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of MS006790 vs. NCBI nr
Match: XP_038894076.1 (uncharacterized protein LOC120082820 [Benincasa hispida]) HSP 1 Score: 232.6 bits (592), Expect = 1.9e-57 Identity = 113/134 (84.33%), Postives = 122/134 (91.04%), Query Frame = 0
BLAST of MS006790 vs. NCBI nr
Match: XP_022964663.1 (uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata] >XP_023519120.1 uncharacterized protein LOC111782580 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6583596.1 RecQ-mediated genome instability protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019296.1 RecQ-mediated genome instability protein 2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 224.9 bits (572), Expect = 4.1e-55 Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 0
BLAST of MS006790 vs. NCBI nr
Match: XP_022970350.1 (uncharacterized protein LOC111469342 [Cucurbita maxima] >XP_022970351.1 uncharacterized protein LOC111469342 [Cucurbita maxima]) HSP 1 Score: 224.9 bits (572), Expect = 4.1e-55 Identity = 108/134 (80.60%), Postives = 119/134 (88.81%), Query Frame = 0
BLAST of MS006790 vs. NCBI nr
Match: XP_008462275.1 (PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo] >KAA0052096.1 recQ-mediated genome instability protein 2 [Cucumis melo var. makuwa]) HSP 1 Score: 223.4 bits (568), Expect = 1.2e-54 Identity = 109/135 (80.74%), Postives = 118/135 (87.41%), Query Frame = 0
BLAST of MS006790 vs. ExPASy Swiss-Prot
Match: Q96E14 (RecQ-mediated genome instability protein 2 OS=Homo sapiens OX=9606 GN=RMI2 PE=1 SV=2) HSP 1 Score: 53.1 bits (126), Expect = 2.8e-06 Identity = 47/124 (37.90%), Postives = 62/124 (50.00%), Query Frame = 0
BLAST of MS006790 vs. ExPASy Swiss-Prot
Match: Q5ZM20 (RecQ-mediated genome instability protein 2 OS=Gallus gallus OX=9031 GN=RMI2 PE=2 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 2.3e-05 Identity = 43/128 (33.59%), Postives = 63/128 (49.22%), Query Frame = 0
BLAST of MS006790 vs. ExPASy Swiss-Prot
Match: Q3UPE3 (RecQ-mediated genome instability protein 2 OS=Mus musculus OX=10090 GN=Rmi2 PE=2 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 5.2e-05 Identity = 45/127 (35.43%), Postives = 61/127 (48.03%), Query Frame = 0
BLAST of MS006790 vs. ExPASy Swiss-Prot
Match: A5PJU7 (RecQ-mediated genome instability protein 2 OS=Bos taurus OX=9913 GN=RMI2 PE=2 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 3.4e-04 Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 0
BLAST of MS006790 vs. ExPASy TrEMBL
Match: A0A6J1DF83 (recQ-mediated genome instability protein 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020510 PE=4 SV=1) HSP 1 Score: 275.0 bits (702), Expect = 1.7e-70 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of MS006790 vs. ExPASy TrEMBL
Match: A0A6J1I0C8 (uncharacterized protein LOC111469342 OS=Cucurbita maxima OX=3661 GN=LOC111469342 PE=4 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 2.0e-55 Identity = 108/134 (80.60%), Postives = 119/134 (88.81%), Query Frame = 0
BLAST of MS006790 vs. ExPASy TrEMBL
Match: A0A6J1HLJ4 (uncharacterized protein LOC111464675 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464675 PE=4 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 2.0e-55 Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 0
BLAST of MS006790 vs. ExPASy TrEMBL
Match: A0A5A7UD07 (RecQ-mediated genome instability protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00780 PE=4 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 5.7e-55 Identity = 109/135 (80.74%), Postives = 118/135 (87.41%), Query Frame = 0
BLAST of MS006790 vs. ExPASy TrEMBL
Match: A0A1S3CGI5 (recQ-mediated genome instability protein 2 OS=Cucumis melo OX=3656 GN=LOC103500657 PE=4 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 5.7e-55 Identity = 109/135 (80.74%), Postives = 118/135 (87.41%), Query Frame = 0
BLAST of MS006790 vs. TAIR 10
Match: AT1G08390.1 (unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 183.3 bits (464), Expect = 1.3e-46 Identity = 89/136 (65.44%), Postives = 110/136 (80.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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