MS006786 (gene) Bitter gourd (TR) v1

Overview
NameMS006786
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpolyadenylation and cleavage factor homolog 4-like
Locationscaffold60: 407674 .. 407805 (-)
RNA-Seq ExpressionMS006786
SyntenyMS006786
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCCCAACCAATGTATGACCTGGGGCCTCCGATTCAGCTCCCAGGAAAAGCTCCATGATCATATGGACTGGCATGGTAGGGAGCAAAAGATTTCTCGTGGCTGGTTCATGAATAAAGCTTCATGGGTTGCT

mRNA sequence

CTCCCCAACCAATGTATGACCTGGGGCCTCCGATTCAGCTCCCAGGAAAAGCTCCATGATCATATGGACTGGCATGGTAGGGAGCAAAAGATTTCTCGTGGCTGGTTCATGAATAAAGCTTCATGGGTTGCT

Coding sequence (CDS)

CTCCCCAACCAATGTATGACCTGGGGCCTCCGATTCAGCTCCCAGGAAAAGCTCCATGATCATATGGACTGGCATGGTAGGGAGCAAAAGATTTCTCGTGGCTGGTTCATGAATAAAGCTTCATGGGTTGCT

Protein sequence

LPNQCMTWGLRFSSQEKLHDHMDWHGREQKISRGWFMNKASWVA
Homology
[Close]
BLAST of MS006786 vs. NCBI nr
Match: XP_023542573.1 (polyadenylation and cleavage factor homolog 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 1   LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA 45
           LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Sbjct: 834 LPRQCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTTMWLS 885

[Close]
BLAST of MS006786 vs. NCBI nr
Match: XP_022954959.1 (polyadenylation and cleavage factor homolog 4-like [Cucurbita moschata])

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 1   LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA 45
           LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Sbjct: 834 LPRQCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTTMWLS 885

[Close]
BLAST of MS006786 vs. NCBI nr
Match: KAG7012378.1 (Polyadenylation and cleavage factor-like 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 1   LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA 45
           LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Sbjct: 834 LPRQCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTTMWLS 885

[Close]
BLAST of MS006786 vs. NCBI nr
Match: KAG6573202.1 (Polyadenylation and cleavage factor-like 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 1   LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA 45
           LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Sbjct: 830 LPRQCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTTMWLS 881

[Close]
BLAST of MS006786 vs. NCBI nr
Match: XP_022994287.1 (polyadenylation and cleavage factor homolog 4-like [Cucurbita maxima])

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-05
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 1   LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA 45
           LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Sbjct: 833 LPRQCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTIMWLS 884

[Close]
BLAST of MS006786 vs. ExPASy Swiss-Prot
Match: Q0WPF2 (Polyadenylation and cleavage factor homolog 4 OS=Arabidopsis thaliana OX=3702 GN=PCFS4 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.3e-05
Identity = 22/52 (42.31%), Postives = 29/52 (55.77%), Query Frame = 0 

Query: 1   LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA 45
           LP QC T GLRF  QE+   HMDWH          +Q  SR WF++ + W++
Sbjct: 649 LPRQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHKQNPSRKWFVSASMWLS 700

[Close]
BLAST of MS006786 vs. ExPASy TrEMBL
Match: A0A6J1GUI7 (polyadenylation and cleavage factor homolog 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457064 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-05
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 1   LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA 45
           LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Sbjct: 834 LPRQCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTTMWLS 885

[Close]
BLAST of MS006786 vs. ExPASy TrEMBL
Match: A0A6J1JVD4 (polyadenylation and cleavage factor homolog 4-like OS=Cucurbita maxima OX=3661 GN=LOC111490062 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-05
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 1   LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA 45
           LP QCMT GLRF SQE+  +HMDWH         R+QK SR WF++   W++
Sbjct: 833 LPRQCMTCGLRFKSQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTIMWLS 884

[Close]
BLAST of MS006786 vs. ExPASy TrEMBL
Match: A0A6J1KKK6 (polyadenylation and cleavage factor homolog 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495412 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-05
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 1   LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA 45
           LP QCMT GLRF +QE+  +HMDWH         R+QK SR WF++ + W++
Sbjct: 816 LPRQCMTCGLRFKTQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLS 867

[Close]
BLAST of MS006786 vs. ExPASy TrEMBL
Match: A0A6J1KI02 (polyadenylation and cleavage factor homolog 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495412 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-05
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 1   LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA 45
           LP QCMT GLRF +QE+  +HMDWH         R+QK SR WF++ + W++
Sbjct: 811 LPRQCMTCGLRFKTQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLS 862

[Close]
BLAST of MS006786 vs. ExPASy TrEMBL
Match: A0A6J1EYD5 (polyadenylation and cleavage factor homolog 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440036 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-05
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 1   LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA 45
           LP QCMT GLRF +QE+  +HMDWH         R+QK SR WF++ + W++
Sbjct: 816 LPRQCMTCGLRFKTQEEHSNHMDWHVTRNRMSKSRKQKPSRKWFVSTSMWLS 867

[Close]
BLAST of MS006786 vs. TAIR 10
Match: AT4G04885.1 (PCF11P-similar protein 4 )

HSP 1 Score: 49.3 bits (116), Expect = 9.2e-07
Identity = 22/52 (42.31%), Postives = 29/52 (55.77%), Query Frame = 0 

Query: 1   LPNQCMTWGLRFSSQEKLHDHMDWH--------GREQKISRGWFMNKASWVA 45
           LP QC T GLRF  QE+   HMDWH          +Q  SR WF++ + W++
Sbjct: 649 LPRQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHKQNPSRKWFVSASMWLS 700

The following BLAST results are available for this feature:
BLAST of MS006786 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023542573.12.8e-0550.00polyadenylation and cleavage factor homolog 4-like [Cucurbita pepo subsp. pepo][more]
XP_022954959.12.8e-0550.00polyadenylation and cleavage factor homolog 4-like [Cucurbita moschata][more]
KAG7012378.12.8e-0550.00Polyadenylation and cleavage factor-like 4 [Cucurbita argyrosperma subsp. argyro... [more]
KAG6573202.12.8e-0550.00Polyadenylation and cleavage factor-like 4, partial [Cucurbita argyrosperma subs... [more]
XP_022994287.13.6e-0550.00polyadenylation and cleavage factor homolog 4-like [Cucurbita maxima][more]
BLAST of MS006786 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q0WPF21.3e-0542.31Polyadenylation and cleavage factor homolog 4 OS=Arabidopsis thaliana OX=3702 GN... [more]
BLAST of MS006786 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GUI71.4e-0550.00polyadenylation and cleavage factor homolog 4-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1JVD41.8e-0550.00polyadenylation and cleavage factor homolog 4-like OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1KKK62.3e-0548.08polyadenylation and cleavage factor homolog 4-like isoform X1 OS=Cucurbita maxim... [more]
A0A6J1KI022.3e-0548.08polyadenylation and cleavage factor homolog 4-like isoform X2 OS=Cucurbita maxim... [more]
A0A6J1EYD52.3e-0548.08polyadenylation and cleavage factor homolog 4-like isoform X1 OS=Cucurbita mosch... [more]
BLAST of MS006786 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G04885.19.2e-0742.31PCF11P-similar protein 4 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006786.1MS006786.1mRNA