MS006569 (gene) Bitter gourd (TR) v1

Overview
NameMS006569
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMuDRA-like transposase
Locationscaffold404: 1367452 .. 1367766 (+)
RNA-Seq ExpressionMS006569
SyntenyMS006569
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCGTGTTTTCATAACATTTGGTGGAGAATGGAACGATAGTGAAAAAGATTACGTTGGTGGTCGCACGAGAGGATTGACAGTGGATAGTACAACCACGTACAGAGAATTTCTAGGTCACGTGTATAGATTGAGTAATATAAACCCCCTTCAATTCGATATTATAATTAGACGCATATATCATTTTAAAACTAAAGTTTGTGTAATGGAGATAACTGATGACGATGACCTGAATTTTTTTTTAACTGGTGAGGATGTATCTGAATTGCCTATATACCTATCTACTACGCCAAAGCAGACACATGAGAATGAAACG

mRNA sequence

CCTCGTGTTTTCATAACATTTGGTGGAGAATGGAACGATAGTGAAAAAGATTACGTTGGTGGTCGCACGAGAGGATTGACAGTGGATAGTACAACCACGTACAGAGAATTTCTAGGTCACGTGTATAGATTGAGTAATATAAACCCCCTTCAATTCGATATTATAATTAGACGCATATATCATTTTAAAACTAAAGTTTGTGTAATGGAGATAACTGATGACGATGACCTGAATTTTTTTTTAACTGGTGAGGATGTATCTGAATTGCCTATATACCTATCTACTACGCCAAAGCAGACACATGAGAATGAAACG

Coding sequence (CDS)

CCTCGTGTTTTCATAACATTTGGTGGAGAATGGAACGATAGTGAAAAAGATTACGTTGGTGGTCGCACGAGAGGATTGACAGTGGATAGTACAACCACGTACAGAGAATTTCTAGGTCACGTGTATAGATTGAGTAATATAAACCCCCTTCAATTCGATATTATAATTAGACGCATATATCATTTTAAAACTAAAGTTTGTGTAATGGAGATAACTGATGACGATGACCTGAATTTTTTTTTAACTGGTGAGGATGTATCTGAATTGCCTATATACCTATCTACTACGCCAAAGCAGACACATGAGAATGAAACG

Protein sequence

PRVFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREFLGHVYRLSNINPLQFDIIIRRIYHFKTKVCVMEITDDDDLNFFLTGEDVSELPIYLSTTPKQTHENET
Homology
BLAST of MS006569 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 7.1e-15
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 0

Query: 3   VFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREFLGHVYRLSNINPLQFDIIIRRIYHF 62
           +FI FGG W D+   YVGG  +G+ V  T TY+E    ++RL  ++   +D++IR  YH 
Sbjct: 7   LFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPYHL 66

Query: 63  KTKVCVMEITDDDDLNFFLTGEDVSELPIYLSTTPKQT 101
                 M +TDDDDL F L  E VS++P+++ST P+++
Sbjct: 67  ACDSPPMFVTDDDDLRFALVQEQVSKVPLFVSTIPRES 104

BLAST of MS006569 vs. NCBI nr
Match: XP_022155431.1 (uncharacterized protein LOC111022579 isoform X1 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 2   RVFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREFLGHVYRLSNINPLQFDIIIRRIYH 61
           R+F+ +GG WND + +Y GG  +G+ V    TY++ L  +Y L+  +P + D+ I+ IY 
Sbjct: 5   RIFVRYGGVWNDKQTEYQGGLLKGIVVCKEITYQDLLDELYALTEADPKESDMKIKCIYE 64

Query: 62  FKTK--VCVMEITDDDDLNFFLTGEDVSELPIYLSTTPK 99
            K +      EI++D DLNF+L GED SE+P+Y+S  P+
Sbjct: 65  IKARNQTPPFEISNDRDLNFYLMGEDTSEVPLYISFEPR 103

BLAST of MS006569 vs. NCBI nr
Match: XP_022155432.1 (uncharacterized protein LOC111022579 isoform X2 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 2   RVFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREFLGHVYRLSNINPLQFDIIIRRIYH 61
           R+F+ +GG WND + +Y GG  +G+ V    TY++ L  +Y L+  +P + D+ I+ IY 
Sbjct: 5   RIFVRYGGVWNDKQTEYQGGLLKGIVVCKEITYQDLLDELYALTEADPKESDMKIKCIYE 64

Query: 62  FKTK--VCVMEITDDDDLNFFLTGEDVSELPIYLSTTPK 99
            K +      EI++D DLNF+L GED SE+P+Y+S  P+
Sbjct: 65  IKARNQTPPFEISNDRDLNFYLMGEDTSEVPLYISFEPR 103

BLAST of MS006569 vs. NCBI nr
Match: XP_038893574.1 (uncharacterized protein LOC120082123 [Benincasa hispida])

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-14
Identity = 37/100 (37.00%), Postives = 63/100 (63.00%), Query Frame = 0

Query: 2   RVFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREFLGHVYRLSNINPLQFDIIIRRIYH 61
           R+F+ FGG+W++S ++YVGG  +GL + +  T  E +  +++  NI    FDI I+  Y 
Sbjct: 5   RIFVRFGGDWDESGRNYVGGHMKGLKIRNDITVSELVSMMHQRLNIGSDMFDIYIKCCYK 64

Query: 62  FKTKVCVMEITDDDDLNFFLTGEDVSELPIYLSTTPKQTH 102
                  ++I DD+DL+FFL G + S++P+++S TP  +H
Sbjct: 65  LLVPASPIDIVDDEDLSFFLEGSEASQMPLFVSVTPVNSH 104

BLAST of MS006569 vs. NCBI nr
Match: XP_038880853.1 (uncharacterized protein LOC120072537 [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 3   VFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREFLGHVYRLSNINPLQFDIIIRRIYHF 62
           + + FGG+W++S ++YVGG  +GL V +  T  E +  +++  N +P  FDI I+   + 
Sbjct: 6   IIVRFGGDWDESRRNYVGGHMKGLKVRNDITVSELVSMMHQRLNTDPDMFDIHIKYYCNL 65

Query: 63  KTKVCVMEITDDDDLNFFLTGEDVSELPIYLSTTPKQTH 102
                 + I DD+DLNFFL G + S +P+++S TP ++H
Sbjct: 66  LVPAPPINIVDDEDLNFFLEGNEASRMPLFVSITPCESH 104

BLAST of MS006569 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.4e-15
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 0

Query: 3   VFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREFLGHVYRLSNINPLQFDIIIRRIYHF 62
           +FI FGG W D+   YVGG  +G+ V  T TY+E    ++RL  ++   +D++IR  YH 
Sbjct: 7   LFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPYHL 66

Query: 63  KTKVCVMEITDDDDLNFFLTGEDVSELPIYLSTTPKQT 101
                 M +TDDDDL F L  E VS++P+++ST P+++
Sbjct: 67  ACDSPPMFVTDDDDLRFALVQEQVSKVPLFVSTIPRES 104

BLAST of MS006569 vs. ExPASy TrEMBL
Match: A0A6J1DPC2 (uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.7e-15
Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 2   RVFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREFLGHVYRLSNINPLQFDIIIRRIYH 61
           R+F+ +GG WND + +Y GG  +G+ V    TY++ L  +Y L+  +P + D+ I+ IY 
Sbjct: 5   RIFVRYGGVWNDKQTEYQGGLLKGIVVCKEITYQDLLDELYALTEADPKESDMKIKCIYE 64

Query: 62  FKTK--VCVMEITDDDDLNFFLTGEDVSELPIYLSTTPK 99
            K +      EI++D DLNF+L GED SE+P+Y+S  P+
Sbjct: 65  IKARNQTPPFEISNDRDLNFYLMGEDTSEVPLYISFEPR 103

BLAST of MS006569 vs. ExPASy TrEMBL
Match: A0A6J1DRN0 (uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.7e-15
Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 2   RVFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREFLGHVYRLSNINPLQFDIIIRRIYH 61
           R+F+ +GG WND + +Y GG  +G+ V    TY++ L  +Y L+  +P + D+ I+ IY 
Sbjct: 5   RIFVRYGGVWNDKQTEYQGGLLKGIVVCKEITYQDLLDELYALTEADPKESDMKIKCIYE 64

Query: 62  FKTK--VCVMEITDDDDLNFFLTGEDVSELPIYLSTTPK 99
            K +      EI++D DLNF+L GED SE+P+Y+S  P+
Sbjct: 65  IKARNQTPPFEISNDRDLNFYLMGEDTSEVPLYISFEPR 103

BLAST of MS006569 vs. ExPASy TrEMBL
Match: A0A6J1DUS4 (uncharacterized protein LOC111023667 OS=Momordica charantia OX=3673 GN=LOC111023667 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.9e-12
Identity = 39/103 (37.86%), Postives = 63/103 (61.17%), Query Frame = 0

Query: 2   RVFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREFLGHVYRLSNINPLQFDIIIRRIYH 61
           R+F+ +GG+WN++   Y GG   GL VD T TY   +  ++ L+ I+P QFD+I++ +Y 
Sbjct: 23  RLFVIYGGKWNEAGTMYEGGVMGGLDVDETITYANLVSALHMLTRIDPDQFDLIVQCVYR 82

Query: 62  FKTKVCVME--ITDDDDLNFFLTG-EDVSELPIYLSTTPKQTH 102
           F  +  V    I DD  L F+L G  D S++P+Y++  PK ++
Sbjct: 83  FDFRYEVPNYLIFDDSSLKFYLNGPPDPSQVPLYVTVIPKASY 125

BLAST of MS006569 vs. ExPASy TrEMBL
Match: A0A5A7T2N3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00450 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.0e-11
Identity = 34/98 (34.69%), Postives = 60/98 (61.22%), Query Frame = 0

Query: 2   RVFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREFLGHVYRLSNINPLQFDIIIRRIYH 61
           R+ +  GGEW++ ++ Y GG  +G+ V    T+++    +Y L+ ++P +FDI IR IY 
Sbjct: 5   RILVRHGGEWDEGQRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYE 64

Query: 62  FK--TKVCVMEITDDDDLNFFLTGEDVSELPIYLSTTP 98
            K   +    E+++D DL F++  E++ E+P+YLS  P
Sbjct: 65  IKGEKEAPPFELSNDRDLKFYILSENLLEVPLYLSFEP 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154925.17.1e-1540.82uncharacterized protein LOC111022071 [Momordica charantia][more]
XP_022155431.11.6e-1440.40uncharacterized protein LOC111022579 isoform X1 [Momordica charantia][more]
XP_022155432.11.6e-1440.40uncharacterized protein LOC111022579 isoform X2 [Momordica charantia][more]
XP_038893574.12.7e-1437.00uncharacterized protein LOC120082123 [Benincasa hispida][more]
XP_038880853.11.1e-1236.36uncharacterized protein LOC120072537 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DL083.4e-1540.82uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DPC27.7e-1540.40uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DRN07.7e-1540.40uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DUS47.9e-1237.86uncharacterized protein LOC111023667 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5A7T2N33.0e-1134.69MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006569.1MS006569.1mRNA