MS006558 (gene) Bitter gourd (TR) v1

Overview
NameMS006558
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionjacalin-related lectin 5-like
Locationscaffold404: 1222904 .. 1223086 (+)
RNA-Seq ExpressionMS006558
SyntenyMS006558
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTAGCGGTAGCGGTAGCGAACGTCAAGTTTATAACTCTACGAGCGATTGTAGCAACTTCGAGAATTCAATGGTTGCTCTAGGAAGTAGAGGAAGTACTCATATCAATCGAGATGAATTTGAGAAAGATCCTCCACGTTATTTTCGCAATCTTCATGCAACTGAAAAGAATGAGAATAAGAAG

mRNA sequence

GGTAGCGGTAGCGGTAGCGAACGTCAAGTTTATAACTCTACGAGCGATTGTAGCAACTTCGAGAATTCAATGGTTGCTCTAGGAAGTAGAGGAAGTACTCATATCAATCGAGATGAATTTGAGAAAGATCCTCCACGTTATTTTCGCAATCTTCATGCAACTGAAAAGAATGAGAATAAGAAG

Coding sequence (CDS)

GGTAGCGGTAGCGGTAGCGAACGTCAAGTTTATAACTCTACGAGCGATTGTAGCAACTTCGAGAATTCAATGGTTGCTCTAGGAAGTAGAGGAAGTACTCATATCAATCGAGATGAATTTGAGAAAGATCCTCCACGTTATTTTCGCAATCTTCATGCAACTGAAAAGAATGAGAATAAGAAG

Protein sequence

GSGSGSERQVYNSTSDCSNFENSMVALGSRGSTHINRDEFEKDPPRYFRNLHATEKNENKK
Homology
BLAST of MS006558 vs. NCBI nr
Match: XP_022951913.1 (jacalin-related lectin 5-like [Cucurbita moschata] >XP_023521144.1 jacalin-related lectin 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.0 bits (136), Expect = 6.6e-05
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 2  SGSGSERQVYNSTSDCSNFENSMVALGSRGSTHINRDEFEKDPPRYFRNLHATEKNE 59
          S +GS  Q +NST   SN    MVA GS G+ HI+RD FE +P  YF NLHA EK++
Sbjct: 12 SNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLHAAEKSQ 68

BLAST of MS006558 vs. NCBI nr
Match: KGN43709.1 (hypothetical protein Csa_017051 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 37/64 (57.81%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 1   GSGSGSERQVYNSTSDCSNFENS---MVALGSRGSTHINRDEFEKDPPRYFRNLHATEKN 60
           GS S +ER V NST   S+ E S   MVA GS G  HI RDEFE DP R+F NL A EKN
Sbjct: 46  GSDSKNERGVDNSTKVSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKN 105

Query: 61  ENKK 62
           E  K
Sbjct: 106 EKSK 109

BLAST of MS006558 vs. NCBI nr
Match: XP_022973282.1 (jacalin-related lectin 5-like [Cucurbita maxima])

HSP 1 Score: 54.3 bits (129), Expect = 4.3e-04
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 2  SGSGSERQVYNSTSDCSNFENSMVALGSRGSTHINRDEFEKDPPRYFRNLHATEKNE 59
          S  GS  Q +NST   SN    MVA GS G+ HI+RD  E +P  YF NLHA +KN+
Sbjct: 12 SNDGSAGQAHNSTRSGSNSSGKMVAPGSGGTAHISRDASESNPQGYFANLHAAQKNQ 68

BLAST of MS006558 vs. ExPASy TrEMBL
Match: A0A6J1GJ19 (jacalin-related lectin 5-like OS=Cucurbita moschata OX=3662 GN=LOC111454653 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 30/57 (52.63%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 2  SGSGSERQVYNSTSDCSNFENSMVALGSRGSTHINRDEFEKDPPRYFRNLHATEKNE 59
          S +GS  Q +NST   SN    MVA GS G+ HI+RD FE +P  YF NLHA EK++
Sbjct: 12 SNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFANLHAAEKSQ 68

BLAST of MS006558 vs. ExPASy TrEMBL
Match: A0A0A0K3Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062750 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.5e-05
Identity = 37/64 (57.81%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 1   GSGSGSERQVYNSTSDCSNFENS---MVALGSRGSTHINRDEFEKDPPRYFRNLHATEKN 60
           GS S +ER V NST   S+ E S   MVA GS G  HI RDEFE DP R+F NL A EKN
Sbjct: 46  GSDSKNERGVDNSTKVSSSTEGSRKTMVAPGSDGKEHILRDEFENDPKRHFANLRAHEKN 105

Query: 61  ENKK 62
           E  K
Sbjct: 106 EKSK 109

BLAST of MS006558 vs. ExPASy TrEMBL
Match: A0A6J1I742 (jacalin-related lectin 5-like OS=Cucurbita maxima OX=3661 GN=LOC111471849 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-04
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 2  SGSGSERQVYNSTSDCSNFENSMVALGSRGSTHINRDEFEKDPPRYFRNLHATEKNE 59
          S  GS  Q +NST   SN    MVA GS G+ HI+RD  E +P  YF NLHA +KN+
Sbjct: 12 SNDGSAGQAHNSTRSGSNSSGKMVAPGSGGTAHISRDASESNPQGYFANLHAAQKNQ 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022951913.16.6e-0552.63jacalin-related lectin 5-like [Cucurbita moschata] >XP_023521144.1 jacalin-relat... [more]
KGN43709.11.1e-0457.81hypothetical protein Csa_017051 [Cucumis sativus][more]
XP_022973282.14.3e-0450.88jacalin-related lectin 5-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GJ193.2e-0552.63jacalin-related lectin 5-like OS=Cucurbita moschata OX=3662 GN=LOC111454653 PE=4... [more]
A0A0A0K3Z85.5e-0557.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G062750 PE=4 SV=1[more]
A0A6J1I7422.1e-0450.88jacalin-related lectin 5-like OS=Cucurbita maxima OX=3661 GN=LOC111471849 PE=4 S... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 53..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006558.1MS006558.1mRNA