MS006516 (gene) Bitter gourd (TR) v1

Overview
NameMS006516
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing protein Os01g0905400-like isoform X1
Locationscaffold404: 687000 .. 687131 (+)
RNA-Seq ExpressionMS006516
SyntenyMS006516
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTTTTGTGCTACGGTGCCAATGCTGGCAAATAAAAAGGTTGTTCTTGAAGATTCACTTGGAGGGAAGGTAACAGTTTTCTACTGTGAAGGATCTCTTACCTTTAAAAAAGGGTGGATTGTTGTTTCATCG

mRNA sequence

TGTTTTTGTGCTACGGTGCCAATGCTGGCAAATAAAAAGGTTGTTCTTGAAGATTCACTTGGAGGGAAGGTAACAGTTTTCTACTGTGAAGGATCTCTTACCTTTAAAAAAGGGTGGATTGTTGTTTCATCG

Coding sequence (CDS)

TGTTTTTGTGCTACGGTGCCAATGCTGGCAAATAAAAAGGTTGTTCTTGAAGATTCACTTGGAGGGAAGGTAACAGTTTTCTACTGTGAAGGATCTCTTACCTTTAAAAAAGGGTGGATTGTTGTTTCATCG

Protein sequence

CFCATVPMLANKKVVLEDSLGGKVTVFYCEGSLTFKKGWIVVSS
Homology
[Close]
BLAST of MS006516 vs. NCBI nr
Match: XP_022137099.1 (B3 domain-containing protein Os01g0905400-like [Momordica charantia] >XP_022137100.1 B3 domain-containing protein Os01g0905400-like [Momordica charantia] >XP_022137101.1 B3 domain-containing protein Os01g0905400-like [Momordica charantia] >XP_022137102.1 B3 domain-containing protein Os01g0905400-like [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 35/45 (77.78%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 2  FCATVPMLANKKVVLEDSLG--GKVTVFYCEGSLTFKKGWIVVSS 45
          F ATVPMLANKKVVLEDSLG   KVTV  CEGSL FKKGW   SS
Sbjct: 50 FAATVPMLANKKVVLEDSLGQQWKVTVSDCEGSLAFKKGWSAFSS 94

[Close]
BLAST of MS006516 vs. NCBI nr
Match: KAG7012291.1 (B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 31/45 (68.89%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 2  FCATVPMLANKKVVLEDSLG--GKVTVFYCEGSLTFKKGWIVVSS 45
          F ATV  L NKKVVLEDSLG   KVTV  CEGSL F++GW V SS
Sbjct: 53 FAATVSRLVNKKVVLEDSLGQKWKVTVSNCEGSLAFREGWSVFSS 97

[Close]
BLAST of MS006516 vs. NCBI nr
Match: KAG6573105.1 (B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 31/45 (68.89%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 2  FCATVPMLANKKVVLEDSLG--GKVTVFYCEGSLTFKKGWIVVSS 45
          F ATV  L NKKVVLEDSLG   KVTV  CEGSL F++GW V SS
Sbjct: 16 FAATVSRLVNKKVVLEDSLGQQWKVTVSNCEGSLAFREGWSVFSS 60

[Close]
BLAST of MS006516 vs. NCBI nr
Match: XP_022954820.1 (uncharacterized protein LOC111456966 [Cucurbita moschata])

HSP 1 Score: 56.6 bits (135), Expect = 6.2e-05
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 2  FCATVPMLANKKVVLEDSLG--GKVTVFYCEGSLTFKKGWIVVSS 45
          F +TV  L NKKVVLEDSLG   KVTV  CEGSL F++GW V SS
Sbjct: 50 FASTVSRLVNKKVVLEDSLGQQWKVTVSNCEGSLAFREGWSVFSS 94

[Close]
BLAST of MS006516 vs. NCBI nr
Match: XP_023542633.1 (uncharacterized protein LOC111802479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.2 bits (134), Expect = 8.1e-05
Identity = 30/45 (66.67%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 2  FCATVPMLANKKVVLEDSLG--GKVTVFYCEGSLTFKKGWIVVSS 45
          F ATV  L NKKVVLEDSLG   KVTV  CEGSL F++GW   SS
Sbjct: 50 FAATVSRLVNKKVVLEDSLGQQWKVTVSNCEGSLAFREGWSAFSS 94

[Close]
BLAST of MS006516 vs. ExPASy TrEMBL
Match: A0A6J1C7A5 (B3 domain-containing protein Os01g0905400-like OS=Momordica charantia OX=3673 GN=LOC111008659 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-08
Identity = 35/45 (77.78%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 2  FCATVPMLANKKVVLEDSLG--GKVTVFYCEGSLTFKKGWIVVSS 45
          F ATVPMLANKKVVLEDSLG   KVTV  CEGSL FKKGW   SS
Sbjct: 50 FAATVPMLANKKVVLEDSLGQQWKVTVSDCEGSLAFKKGWSAFSS 94

[Close]
BLAST of MS006516 vs. ExPASy TrEMBL
Match: A0A6J1GTH2 (uncharacterized protein LOC111456966 OS=Cucurbita moschata OX=3662 GN=LOC111456966 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-05
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 0 

Query: 2  FCATVPMLANKKVVLEDSLG--GKVTVFYCEGSLTFKKGWIVVSS 45
          F +TV  L NKKVVLEDSLG   KVTV  CEGSL F++GW V SS
Sbjct: 50 FASTVSRLVNKKVVLEDSLGQQWKVTVSNCEGSLAFREGWSVFSS 94

[Close]
BLAST of MS006516 vs. ExPASy TrEMBL
Match: A0A6J1K243 (uncharacterized protein LOC111489978 OS=Cucurbita maxima OX=3661 GN=LOC111489978 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-05
Identity = 30/45 (66.67%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 2  FCATVPMLANKKVVLEDSLG--GKVTVFYCEGSLTFKKGWIVVSS 45
          F ATV  L NKKVVLEDSLG   KVTV  CEGSL F++GW   SS
Sbjct: 50 FAATVSRLVNKKVVLEDSLGQQWKVTVSNCEGSLAFREGWSAFSS 94

[Close]
BLAST of MS006516 vs. ExPASy TrEMBL
Match: A0A6J1KGU5 (B3 domain-containing protein Os01g0905400-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495140 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-04
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 2  FCATVPMLANKKVVLEDSLG--GKVTVFYCEGSLTFKKGWIVVSS 45
          F +TV  L NKKVVLEDSLG   KVTV  CEGSL F++GW   SS
Sbjct: 50 FASTVSKLVNKKVVLEDSLGQQWKVTVSNCEGSLAFQEGWSAFSS 94

[Close]
BLAST of MS006516 vs. ExPASy TrEMBL
Match: A0A6J1KJC3 (uncharacterized protein LOC111495140 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495140 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-04
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 2  FCATVPMLANKKVVLEDSLG--GKVTVFYCEGSLTFKKGWIVVSS 45
          F +TV  L NKKVVLEDSLG   KVTV  CEGSL F++GW   SS
Sbjct: 50 FASTVSKLVNKKVVLEDSLGQQWKVTVSNCEGSLAFQEGWSAFSS 94

The following BLAST results are available for this feature:
BLAST of MS006516 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022137099.11.3e-0777.78B3 domain-containing protein Os01g0905400-like [Momordica charantia] >XP_0221371... [more]
KAG7012291.12.8e-0568.89B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperm... [more]
KAG6573105.12.8e-0568.89B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022954820.16.2e-0566.67uncharacterized protein LOC111456966 [Cucurbita moschata][more]
XP_023542633.18.1e-0566.67uncharacterized protein LOC111802479 [Cucurbita pepo subsp. pepo][more]
BLAST of MS006516 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS006516 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C7A56.5e-0877.78B3 domain-containing protein Os01g0905400-like OS=Momordica charantia OX=3673 GN... [more]
A0A6J1GTH23.0e-0566.67uncharacterized protein LOC111456966 OS=Cucurbita moschata OX=3662 GN=LOC1114569... [more]
A0A6J1K2433.9e-0566.67uncharacterized protein LOC111489978 OS=Cucurbita maxima OX=3661 GN=LOC111489978... [more]
A0A6J1KGU51.1e-0464.44B3 domain-containing protein Os01g0905400-like isoform X1 OS=Cucurbita maxima OX... [more]
A0A6J1KJC31.1e-0464.44uncharacterized protein LOC111495140 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of MS006516 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006516.1MS006516.1mRNA