MS006506 (gene) Bitter gourd (TR) v1

Overview


Name	MS006506
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	MADS-box protein JOINTLESS-like
Location	scaffold404: 475669 .. 475881 (+)
RNA-Seq Expression	MS006506
Synteny	MS006506

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATGACGAGGAAGAAAATTCAGATCAAGAAGATAGACAACATAGCTGCAAGGCAAGTGGCATTTTCCAAGAGGAGAAAGGGGCTCTTCAAGAAGGCCAAAGAACTTGCAATTCTCTGTGATGCTGAGATTGGCCTTTTTGTTTTCTCTGCTTCAGGAAAGCTCTTTGATTATGCAAGCTCAAGGTTTTTTCTCTCTCTAAACTCTAAAATT

mRNA sequence

AAAATGACGAGGAAGAAAATTCAGATCAAGAAGATAGACAACATAGCTGCAAGGCAAGTGGCATTTTCCAAGAGGAGAAAGGGGCTCTTCAAGAAGGCCAAAGAACTTGCAATTCTCTGTGATGCTGAGATTGGCCTTTTTGTTTTCTCTGCTTCAGGAAAGCTCTTTGATTATGCAAGCTCAAGGTTTTTTCTCTCTCTAAACTCTAAAATT

Coding sequence (CDS)

AAAATGACGAGGAAGAAAATTCAGATCAAGAAGATAGACAACATAGCTGCAAGGCAAGTGGCATTTTCCAAGAGGAGAAAGGGGCTCTTCAAGAAGGCCAAAGAACTTGCAATTCTCTGTGATGCTGAGATTGGCCTTTTTGTTTTCTCTGCTTCAGGAAAGCTCTTTGATTATGCAAGCTCAAGGTTTTTTCTCTCTCTAAACTCTAAAATT

Protein sequence

KMTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASSRFFLSLNSKI

Homology

[Close]

BLAST of MS006506 vs. NCBI nr
Match: XP_022141962.1 (MADS-box protein JOINTLESS-like isoform X2 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 6.9e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 60

[Close]

BLAST of MS006506 vs. NCBI nr
Match: XP_022141961.1 (MADS-box protein JOINTLESS-like isoform X1 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 6.9e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 60

[Close]

BLAST of MS006506 vs. NCBI nr
Match: XP_023511719.1 (MADS-box protein JOINTLESS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.3 bits (277), Expect = 3.4e-21
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGL VFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of MS006506 vs. NCBI nr
Match: XP_031744925.1 (MADS-box protein SVP isoform X2 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 3.4e-21
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGL VFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of MS006506 vs. NCBI nr
Match: XP_038886864.1 (MADS-box protein SVP-like isoform X3 [Benincasa hispida])

HSP 1 Score: 111.3 bits (277), Expect = 3.4e-21
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGL VFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of MS006506 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.2e-18
Identity = 43/60 (71.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          M R+KIQIKKIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L +FS++GKLFDY+SS
Sbjct: 1  MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

[Close]

BLAST of MS006506 vs. ExPASy Swiss-Prot
Match: O82794 (MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-17
Identity = 42/61 (68.85%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          M R+KI+IKKIDNI ARQV FSKRR+G+FKKA EL++LCDA++ L +FSA+GKLF+++SS
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 62 R 63
          R
Sbjct: 61 R 61

[Close]

BLAST of MS006506 vs. ExPASy Swiss-Prot
Match: Q5K4R0 (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=3)

HSP 1 Score: 87.0 bits (214), Expect = 9.1e-17
Identity = 42/58 (72.41%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 4  RKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 62
          R++I I++IDN+AARQV FSKRR+GLFKKA+EL+ILCDAE+GL VFSA+GKLF +AS+
Sbjct: 22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAST 79

[Close]

BLAST of MS006506 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-16
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L +FS++GKLF++ SS
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

[Close]

BLAST of MS006506 vs. ExPASy Swiss-Prot
Match: Q6VAM4 (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS23 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.9e-16
Identity = 41/60 (68.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          M R KI+IK+IDN  +RQV FSKRR GLFKKA+EL+ILCDAE+GL VFS++ +L+D+ASS
Sbjct: 1  MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASS 60

[Close]

BLAST of MS006506 vs. ExPASy TrEMBL
Match: A0A6J1CLA0 (MADS-box protein JOINTLESS-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012209 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 60

[Close]

BLAST of MS006506 vs. ExPASy TrEMBL
Match: A0A6J1CKS2 (MADS-box protein JOINTLESS-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012209 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 60

[Close]

BLAST of MS006506 vs. ExPASy TrEMBL
Match: A0A6J1IA12 (MADS-box protein JOINTLESS-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470617 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGL VFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of MS006506 vs. ExPASy TrEMBL
Match: A0A6J1I4L2 (MADS-box protein JOINTLESS-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111470617 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGL VFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of MS006506 vs. ExPASy TrEMBL
Match: A0A6J1I8F3 (MADS-box protein JOINTLESS-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470617 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGL VFSASGKLFDYASS
Sbjct: 1  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS 60

[Close]

BLAST of MS006506 vs. TAIR 10
Match: AT4G24540.1 (AGAMOUS-like 24 )

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-19
Identity = 42/61 (68.85%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          M R+KI+IKKIDNI ARQV FSKRR+G+FKKA EL++LCDA++ L +FSA+GKLF+++SS
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 62 R 63
          R
Sbjct: 61 R 61

[Close]

BLAST of MS006506 vs. TAIR 10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-17
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L +FS++GKLF++ SS
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

[Close]

BLAST of MS006506 vs. TAIR 10
Match: AT2G22540.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 84.0 bits (206), Expect = 5.5e-17
Identity = 39/56 (69.64%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFD 58
          M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L +FS++GKLFD
Sbjct: 1  MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFD 56

[Close]

BLAST of MS006506 vs. TAIR 10
Match: AT4G37940.1 (AGAMOUS-like 21 )

HSP 1 Score: 84.0 bits (206), Expect = 5.5e-17
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          M R KI I++ID+  +RQV FSKRRKGL KKAKELAILCDAE+GL +FS++GKL+D+ASS
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

[Close]

BLAST of MS006506 vs. TAIR 10
Match: AT2G14210.1 (AGAMOUS-like 44 )

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-16
Identity = 40/60 (66.67%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 2  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLFVFSASGKLFDYASS 61
          M R KI I++IDN  +RQV FSKRR GL KKAKEL+ILCDAE+G+ +FS++GKL+DYAS+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYASN 60

The following BLAST results are available for this feature:

BLAST of MS006506 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141962.1	6.9e-22	100.00	MADS-box protein JOINTLESS-like isoform X2 [Momordica charantia]	[more]
XP_022141961.1	6.9e-22	100.00	MADS-box protein JOINTLESS-like isoform X1 [Momordica charantia]	[more]
XP_023511719.1	3.4e-21	98.33	MADS-box protein JOINTLESS-like [Cucurbita pepo subsp. pepo]	[more]
XP_031744925.1	3.4e-21	98.33	MADS-box protein SVP isoform X2 [Cucumis sativus]	[more]
XP_038886864.1	3.4e-21	98.33	MADS-box protein SVP-like isoform X3 [Benincasa hispida]	[more]

BLAST of MS006506 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FUY6	8.2e-18	71.67	MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1	[more]
O82794	1.1e-17	68.85	MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1	[more]
Q5K4R0	9.1e-17	72.41	MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q9FVC1	1.6e-16	66.67	MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1	[more]
Q6VAM4	5.9e-16	68.33	MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of MS006506 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CLA0	3.3e-22	100.00	MADS-box protein JOINTLESS-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1CKS2	3.3e-22	100.00	MADS-box protein JOINTLESS-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1IA12	1.7e-21	98.33	MADS-box protein JOINTLESS-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1I4L2	1.7e-21	98.33	MADS-box protein JOINTLESS-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1I8F3	1.7e-21	98.33	MADS-box protein JOINTLESS-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of MS006506 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24540.1	7.6e-19	68.85	AGAMOUS-like 24	[more]
AT2G22540.1	1.1e-17	66.67	K-box region and MADS-box transcription factor family protein	[more]
AT2G22540.2	5.5e-17	69.64	K-box region and MADS-box transcription factor family protein	[more]
AT4G37940.1	5.5e-17	70.00	AGAMOUS-like 21	[more]
AT2G14210.1	1.6e-16	66.67	AGAMOUS-like 44	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 39..60 score: 54.5 coord: 4..24 score: 53.82 coord: 24..39 score: 66.87
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 2..61 e-value: 2.6E-34 score: 130.0
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..58 e-value: 1.9E-22 score: 78.5
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 2..62 score: 27.641768
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 14..70 e-value: 2.4E-21 score: 77.3
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..62
None	No IPR available	PANTHER	PTHR48019:SF6	MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1	coord: 2..62
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 2..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006506.1	MS006506.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity