MS006426 (gene) Bitter gourd (TR) v1

Overview


Name	MS006426
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Style cell-cycle inhibitor 1
Location	scaffold327: 561145 .. 561375 (+)
RNA-Seq Expression	MS006426
Synteny	MS006426

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGCCAAATATGAAGAACTGTCGAAGGAGGACTATTTCTCAAAGAATAATGAGTTTGCTACCTGGTTGAAAGATGAGAAAAATGTGTATTTCTCTGATCTCTCGTCGGAGTCTGCTCGCAAGCTTTTCTCTGATTTTGTTGAACTGTGGAATGACCAAAAGCTTGAATCTCGATATTATGAGGGTATTACAAGTGGGCCTCGGACATCCCATAACTGGAAAATCAAGGGG

mRNA sequence

AGAGCCAAATATGAAGAACTGTCGAAGGAGGACTATTTCTCAAAGAATAATGAGTTTGCTACCTGGTTGAAAGATGAGAAAAATGTGTATTTCTCTGATCTCTCGTCGGAGTCTGCTCGCAAGCTTTTCTCTGATTTTGTTGAACTGTGGAATGACCAAAAGCTTGAATCTCGATATTATGAGGGTATTACAAGTGGGCCTCGGACATCCCATAACTGGAAAATCAAGGGG

Coding sequence (CDS)

AGAGCCAAATATGAAGAACTGTCGAAGGAGGACTATTTCTCAAAGAATAATGAGTTTGCTACCTGGTTGAAAGATGAGAAAAATGTGTATTTCTCTGATCTCTCGTCGGAGTCTGCTCGCAAGCTTTTCTCTGATTTTGTTGAACTGTGGAATGACCAAAAGCTTGAATCTCGATATTATGAGGGTATTACAAGTGGGCCTCGGACATCCCATAACTGGAAAATCAAGGGG

Protein sequence

RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYYEGITSGPRTSHNWKIKG

Homology

[Close]

BLAST of MS006426 vs. NCBI nr
Match: XP_022147997.1 (protein PXR1 [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1   RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY 60
           RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY
Sbjct: 82  RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY 141

Query: 61  EGITSGPRTSHNWKIKG 78
           EGITSGPRTSHNWKIKG
Sbjct: 142 EGITSGPRTSHNWKIKG 158

[Close]

BLAST of MS006426 vs. NCBI nr
Match: XP_023553665.1 (luc7-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.0 bits (380), Expect = 4.2e-33
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY 60
           RAK EELS+EDYF KNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQ+LESRYY
Sbjct: 82  RAKIEELSEEDYFLKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQRLESRYY 141

Query: 61  EGITSGPRTSHNWKIKG 78
           EGI+SGPRTSHNWKIKG
Sbjct: 142 EGISSGPRTSHNWKIKG 158

[Close]

BLAST of MS006426 vs. NCBI nr
Match: XP_022952367.1 (protein PXR1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY 60
           RAK EELS+EDYF KNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWND++LESRYY
Sbjct: 82  RAKIEELSEEDYFLKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDRRLESRYY 141

Query: 61  EGITSGPRTSHNWKIKG 78
           EGI+SGPRTSHNWKIKG
Sbjct: 142 EGISSGPRTSHNWKIKG 158

[Close]

BLAST of MS006426 vs. NCBI nr
Match: XP_022969411.1 (luc7-like protein 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY 60
           RAK EELS+EDYF KNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWND++LESRYY
Sbjct: 82  RAKIEELSEEDYFLKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDRRLESRYY 141

Query: 61  EGITSGPRTSHNWKIKG 78
           EGI+SGPRTSHNWKIKG
Sbjct: 142 EGISSGPRTSHNWKIKG 158

[Close]

BLAST of MS006426 vs. NCBI nr
Match: KAG6572474.1 (Style cell-cycle inhibitor 1-B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012068.1 hypothetical protein SDJN02_26976, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY 60
           RAK EELS+EDYF KNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWND++LESRYY
Sbjct: 82  RAKIEELSEEDYFLKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDRRLESRYY 141

Query: 61  EGITSGPRTSHNWKIKG 78
           EGI+SGPRTSHNWKIKG
Sbjct: 142 EGISSGPRTSHNWKIKG 158

[Close]

BLAST of MS006426 vs. ExPASy Swiss-Prot
Match: A0A1S4AX27 (Style cell-cycle inhibitor 1-A OS=Nicotiana tabacum OX=4097 GN=SCI1A PE=2 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 4.7e-27
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 3   KYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYYEG 62
           K+EELSK+DYFSKNNEFATWLKD+KN++FSDLSSE+AR LFSDFV  WN  KL+S+YYEG
Sbjct: 80  KFEELSKDDYFSKNNEFATWLKDKKNLFFSDLSSETARDLFSDFVIQWNKGKLDSQYYEG 139

Query: 63  ITSGPRTSHNWKIK 77
           I +GPR+SH W IK
Sbjct: 140 IATGPRSSHAWNIK 153

[Close]

BLAST of MS006426 vs. ExPASy Swiss-Prot
Match: A0A1S3XQD6 (Style cell-cycle inhibitor 1-B OS=Nicotiana tabacum OX=4097 GN=SCI1B PE=2 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-26
Identity = 55/74 (74.32%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 3   KYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYYEG 62
           K+EELSK+DYFSKNNEFA+WLKD+KN++FSDLSSE+AR LFSDFV  WN  KL+S+YYEG
Sbjct: 84  KFEELSKDDYFSKNNEFASWLKDKKNLFFSDLSSETARNLFSDFVIQWNKGKLDSQYYEG 143

Query: 63  ITSGPRTSHNWKIK 77
           I +GPR+SH W IK
Sbjct: 144 IATGPRSSHAWNIK 157

[Close]

BLAST of MS006426 vs. ExPASy Swiss-Prot
Match: Q8GWY0 (Style cell-cycle inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=SCI1 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.4e-24
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 6   ELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYYEGITS 65
           ELS EDYFSKNNEFATWLK+EK  YF+DL++E+AR LFS FV+ WN  KLESRYYEGI++
Sbjct: 87  ELSMEDYFSKNNEFATWLKEEKRTYFNDLTTEAARGLFSRFVKRWNRGKLESRYYEGIST 146

Query: 66  GPRTSHNWKIK 77
            PRT+H+W IK
Sbjct: 147 APRTAHDWMIK 157

[Close]

BLAST of MS006426 vs. ExPASy TrEMBL
Match: A0A6J1D3V9 (protein PXR1 OS=Momordica charantia OX=3673 GN=LOC111016787 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.6e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1   RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY 60
           RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY
Sbjct: 82  RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY 141

Query: 61  EGITSGPRTSHNWKIKG 78
           EGITSGPRTSHNWKIKG
Sbjct: 142 EGITSGPRTSHNWKIKG 158

[Close]

BLAST of MS006426 vs. ExPASy TrEMBL
Match: A0A6J1HXQ3 (luc7-like protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468427 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.0e-33
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY 60
           RAK EELS+EDYF KNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWND++LESRYY
Sbjct: 82  RAKIEELSEEDYFLKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDRRLESRYY 141

Query: 61  EGITSGPRTSHNWKIKG 78
           EGI+SGPRTSHNWKIKG
Sbjct: 142 EGISSGPRTSHNWKIKG 158

[Close]

BLAST of MS006426 vs. ExPASy TrEMBL
Match: A0A6J1GK84 (protein PXR1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455071 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.0e-33
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY 60
           RAK EELS+EDYF KNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWND++LESRYY
Sbjct: 82  RAKIEELSEEDYFLKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDRRLESRYY 141

Query: 61  EGITSGPRTSHNWKIKG 78
           EGI+SGPRTSHNWKIKG
Sbjct: 142 EGISSGPRTSHNWKIKG 158

[Close]

BLAST of MS006426 vs. ExPASy TrEMBL
Match: A0A0A0K434 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238960 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.8e-33
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY 60
           RAK +ELSKEDYFSKNNEFATWLKD KNVYFSDLSSESAR+LFSDFVELWND+KLESRYY
Sbjct: 82  RAKIQELSKEDYFSKNNEFATWLKDVKNVYFSDLSSESARELFSDFVELWNDRKLESRYY 141

Query: 61  EGITSGPRTSHNWKIKG 78
           EGI+SGPRTSHNWKIKG
Sbjct: 142 EGISSGPRTSHNWKIKG 158

[Close]

BLAST of MS006426 vs. ExPASy TrEMBL
Match: A0A1S3BGM9 (protein PXR1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489637 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   RAKYEELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYY 60
           R K +ELSKEDYFSKNNEFATWLKD KNVYFSDLSSESAR+LFSDFVELWND+KLESRYY
Sbjct: 82  RTKIQELSKEDYFSKNNEFATWLKDVKNVYFSDLSSESARELFSDFVELWNDRKLESRYY 141

Query: 61  EGITSGPRTSHNWKIKG 78
           EGI+SGPRTSHNWKIKG
Sbjct: 142 EGISSGPRTSHNWKIKG 158

[Close]

BLAST of MS006426 vs. TAIR 10
Match: AT1G79200.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 4.5e-25
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 6   ELSKEDYFSKNNEFATWLKDEKNVYFSDLSSESARKLFSDFVELWNDQKLESRYYEGITS 65
           ELS EDYFSKNNEFATWLK+EK  YF+DL++E+AR LFS FV+ WN  KLESRYYEGI++
Sbjct: 87  ELSMEDYFSKNNEFATWLKEEKRTYFNDLTTEAARGLFSRFVKRWNRGKLESRYYEGIST 146

Query: 66  GPRTSHNWKIK 77
            PRT+H+W IK
Sbjct: 147 APRTAHDWMIK 157

The following BLAST results are available for this feature:

BLAST of MS006426 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147997.1	5.4e-36	100.00	protein PXR1 [Momordica charantia]	[more]
XP_023553665.1	4.2e-33	93.51	luc7-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022952367.1	1.2e-32	92.21	protein PXR1 isoform X1 [Cucurbita moschata]	[more]
XP_022969411.1	1.2e-32	92.21	luc7-like protein 3 isoform X1 [Cucurbita maxima]	[more]
KAG6572474.1	1.2e-32	92.21	Style cell-cycle inhibitor 1-B, partial [Cucurbita argyrosperma subsp. sororia] ...	[more]

BLAST of MS006426 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A1S4AX27	4.7e-27	75.68	Style cell-cycle inhibitor 1-A OS=Nicotiana tabacum OX=4097 GN=SCI1A PE=2 SV=2	[more]
A0A1S3XQD6	1.1e-26	74.32	Style cell-cycle inhibitor 1-B OS=Nicotiana tabacum OX=4097 GN=SCI1B PE=2 SV=2	[more]
Q8GWY0	6.4e-24	71.83	Style cell-cycle inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=SCI1 PE=2 SV=1	[more]

BLAST of MS006426 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3V9	2.6e-36	100.00	protein PXR1 OS=Momordica charantia OX=3673 GN=LOC111016787 PE=4 SV=1	[more]
A0A6J1HXQ3	6.0e-33	92.21	luc7-like protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468427 PE=4 ...	[more]
A0A6J1GK84	6.0e-33	92.21	protein PXR1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455071 PE=4 SV=1	[more]
A0A0A0K434	7.8e-33	92.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238960 PE=4 SV=1	[more]
A0A1S3BGM9	2.3e-32	90.91	protein PXR1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489637 PE=4 SV=1	[more]

BLAST of MS006426 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79200.1	4.5e-25	71.83	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044688	Style cell-cycle inhibitor 1-like	PANTHER	PTHR34117	STYLE CELL-CYCLE INHIBITOR 1	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006426.1	MS006426.1	mRNA