MS006423 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCCGAAGTCAGTAGTCTAGTACGGGTACTCGCCGGCTACAAGGACGAAGATAATCGGACGACGCTGGGGAATGGCCAGGATCAATCAACGGCTCTCGTTACCCGCGACTTGCTCGGACAATCTTCCAAGCTCGCCGAGACTCAGGAATTGGACCTCGATTTGCAGGTTCCCACCGGCTGGGAAAAGAGACTCGACTTGAAGGTCCCTTCATCTTCTTCTCCGCTTCAATTTTTATCTGCAACCCTTTTTCTTTTTTAATTTTTTTGTTTCGAAATCTGAAGAACATGTTGATTTGATTTGATTTGATTTTGTAAACCCTCCATTCTTCAGGCTTCAGCTGTTCTTTTTCTTTTTTCTTTTTTCTTTTTTTTTTTCTGGGGAAACAAAAAAGAAAAAACCATTTTGTTGGTTACTGTAATTCATTTCATTCAAGAATTGTTTATAATTGCCTTCAGAAATTCAGCTATTTTTCCGATGGAAAAAGGGGGAAAAAACATTTTGTACTTGTGGGTATGGTTTTTATCTTTTATTTGAATTCTCTGCAAAGACTGTAACTTCCTTTCCTTTAATGACATTAATTGCGGCGCTTGGCCTTTAAAATTCTTGGTACTCCTGATTAATTATCATCGCATCGTCCCACCATCTCCTCTGAAATCATTAATTTCCGTATGAATTGAAGAAAAGTGAAAACAGGCGTGTGATTTAATCGTCGATTTTACTCAATTTCCTGTGTTTTGGTTTTTGCAGTCGGGGAAAGTTTACATACAGAGAAGTAAAACTCCGGATTCTCCGGTGAGTTCGGATTCGAAGCAACGGCAACACCAAATGATTAATCAGACAGAATCGAAGTTTCAGGATTTGAACTTCCCACCGTCTCCTTCGAAACGAACGTTAAATCTGTTCAGCGAAACGAGCTTGGATTTGAAATTGCCGTCGTCGTCCACCAATTACGCAAGCGTGTGCACTCTGGATAAGGTGAAATCGGCGCTGGAGAGGGCGGACAAGGAGCTGGTAAAGAAACGCTCTTCGCTCTGGAAGTCGTCGTCGCCGTCGTACTCTTCGTCGTCTTCGTCGGCGGCGGCGGCGGCGGGGAAAGAAATTCAGGAAGAAGAAGCGGCGGAAGTCAGGAACTGGACGACGCCGATTGCGGTGGGTTGCCCGGGATGTTTATCTTATGTATTGGTAATGAAAAACAATCCGAGGTGTCCTCGTTGCAACTCTGTTGTTCCATTGCCCAGTATGAAGAAACCTCGGATTGATCTAAACATGTCCATA ATGGCTGCCGAAGTCAGTAGTCTAGTACGGGTACTCGCCGGCTACAAGGACGAAGATAATCGGACGACGCTGGGGAATGGCCAGGATCAATCAACGGCTCTCGTTACCCGCGACTTGCTCGGACAATCTTCCAAGCTCGCCGAGACTCAGGAATTGGACCTCGATTTGCAGGTTCCCACCGGCTGGGAAAAGAGACTCGACTTGAAGTCGGGGAAAGTTTACATACAGAGAAGTAAAACTCCGGATTCTCCGGTGAGTTCGGATTCGAAGCAACGGCAACACCAAATGATTAATCAGACAGAATCGAAGTTTCAGGATTTGAACTTCCCACCGTCTCCTTCGAAACGAACGTTAAATCTGTTCAGCGAAACGAGCTTGGATTTGAAATTGCCGTCGTCGTCCACCAATTACGCAAGCGTGTGCACTCTGGATAAGGTGAAATCGGCGCTGGAGAGGGCGGACAAGGAGCTGGTAAAGAAACGCTCTTCGCTCTGGAAGTCGTCGTCGCCGTCGTACTCTTCGTCGTCTTCGTCGGCGGCGGCGGCGGCGGGGAAAGAAATTCAGGAAGAAGAAGCGGCGGAAGTCAGGAACTGGACGACGCCGATTGCGGTGGGTTGCCCGGGATGTTTATCTTATGTATTGGTAATGAAAAACAATCCGAGGTGTCCTCGTTGCAACTCTGTTGTTCCATTGCCCAGTATGAAGAAACCTCGGATTGATCTAAACATGTCCATA ATGGCTGCCGAAGTCAGTAGTCTAGTACGGGTACTCGCCGGCTACAAGGACGAAGATAATCGGACGACGCTGGGGAATGGCCAGGATCAATCAACGGCTCTCGTTACCCGCGACTTGCTCGGACAATCTTCCAAGCTCGCCGAGACTCAGGAATTGGACCTCGATTTGCAGGTTCCCACCGGCTGGGAAAAGAGACTCGACTTGAAGTCGGGGAAAGTTTACATACAGAGAAGTAAAACTCCGGATTCTCCGGTGAGTTCGGATTCGAAGCAACGGCAACACCAAATGATTAATCAGACAGAATCGAAGTTTCAGGATTTGAACTTCCCACCGTCTCCTTCGAAACGAACGTTAAATCTGTTCAGCGAAACGAGCTTGGATTTGAAATTGCCGTCGTCGTCCACCAATTACGCAAGCGTGTGCACTCTGGATAAGGTGAAATCGGCGCTGGAGAGGGCGGACAAGGAGCTGGTAAAGAAACGCTCTTCGCTCTGGAAGTCGTCGTCGCCGTCGTACTCTTCGTCGTCTTCGTCGGCGGCGGCGGCGGCGGGGAAAGAAATTCAGGAAGAAGAAGCGGCGGAAGTCAGGAACTGGACGACGCCGATTGCGGTGGGTTGCCCGGGATGTTTATCTTATGTATTGGTAATGAAAAACAATCCGAGGTGTCCTCGTTGCAACTCTGTTGTTCCATTGCCCAGTATGAAGAAACCTCGGATTGATCTAAACATGTCCATA MAAEVSSLVRVLAGYKDEDNRTTLGNGQDQSTALVTRDLLGQSSKLAETQELDLDLQVPTGWEKRLDLKSGKVYIQRSKTPDSPVSSDSKQRQHQMINQTESKFQDLNFPPSPSKRTLNLFSETSLDLKLPSSSTNYASVCTLDKVKSALERADKELVKKRSSLWKSSSPSYSSSSSSAAAAAGKEIQEEEAAEVRNWTTPIAVGCPGCLSYVLVMKNNPRCPRCNSVVPLPSMKKPRIDLNMSI Homology
BLAST of MS006423 vs. NCBI nr
Match: XP_004139833.1 (uncharacterized protein LOC101214550 [Cucumis sativus] >KGN44280.1 hypothetical protein Csa_016628 [Cucumis sativus]) HSP 1 Score: 400.2 bits (1027), Expect = 1.3e-107 Identity = 220/248 (88.71%), Postives = 232/248 (93.55%), Query Frame = 0
BLAST of MS006423 vs. NCBI nr
Match: XP_008447115.1 (PREDICTED: uncharacterized protein LOC103489640 [Cucumis melo]) HSP 1 Score: 397.1 bits (1019), Expect = 1.1e-106 Identity = 218/249 (87.55%), Postives = 231/249 (92.77%), Query Frame = 0
BLAST of MS006423 vs. NCBI nr
Match: XP_022969452.1 (uncharacterized protein LOC111468450 [Cucurbita maxima]) HSP 1 Score: 363.2 bits (931), Expect = 1.7e-96 Identity = 211/257 (82.10%), Postives = 222/257 (86.38%), Query Frame = 0
BLAST of MS006423 vs. NCBI nr
Match: XP_022952111.1 (uncharacterized protein LOC111454876 [Cucurbita moschata]) HSP 1 Score: 358.2 bits (918), Expect = 5.6e-95 Identity = 209/263 (79.47%), Postives = 221/263 (84.03%), Query Frame = 0
BLAST of MS006423 vs. NCBI nr
Match: XP_023553772.1 (uncharacterized protein DDB_G0280205 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 357.8 bits (917), Expect = 7.3e-95 Identity = 210/261 (80.46%), Postives = 221/261 (84.67%), Query Frame = 0
BLAST of MS006423 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 8.0e-04 Identity = 23/68 (33.82%), Postives = 42/68 (61.76%), Query Frame = 0
BLAST of MS006423 vs. ExPASy TrEMBL
Match: A0A0A0K3J9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238440 PE=4 SV=1) HSP 1 Score: 400.2 bits (1027), Expect = 6.2e-108 Identity = 220/248 (88.71%), Postives = 232/248 (93.55%), Query Frame = 0
BLAST of MS006423 vs. ExPASy TrEMBL
Match: A0A1S3BGM6 (uncharacterized protein LOC103489640 OS=Cucumis melo OX=3656 GN=LOC103489640 PE=4 SV=1) HSP 1 Score: 397.1 bits (1019), Expect = 5.2e-107 Identity = 218/249 (87.55%), Postives = 231/249 (92.77%), Query Frame = 0
BLAST of MS006423 vs. ExPASy TrEMBL
Match: A0A6J1HWE1 (uncharacterized protein LOC111468450 OS=Cucurbita maxima OX=3661 GN=LOC111468450 PE=4 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 8.4e-97 Identity = 211/257 (82.10%), Postives = 222/257 (86.38%), Query Frame = 0
BLAST of MS006423 vs. ExPASy TrEMBL
Match: A0A6J1GJC7 (uncharacterized protein LOC111454876 OS=Cucurbita moschata OX=3662 GN=LOC111454876 PE=4 SV=1) HSP 1 Score: 358.2 bits (918), Expect = 2.7e-95 Identity = 209/263 (79.47%), Postives = 221/263 (84.03%), Query Frame = 0
BLAST of MS006423 vs. ExPASy TrEMBL
Match: A0A6J1EXD9 (uncharacterized protein LOC111437042 OS=Cucurbita moschata OX=3662 GN=LOC111437042 PE=4 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 5.1e-94 Identity = 195/246 (79.27%), Postives = 213/246 (86.59%), Query Frame = 0
BLAST of MS006423 vs. TAIR 10
Match: AT1G79160.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 190.7 bits (483), Expect = 1.4e-48 Identity = 129/261 (49.43%), Postives = 162/261 (62.07%), Query Frame = 0
BLAST of MS006423 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 188.0 bits (476), Expect = 9.3e-48 Identity = 126/279 (45.16%), Postives = 162/279 (58.06%), Query Frame = 0
BLAST of MS006423 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 5.7e-05 Identity = 23/68 (33.82%), Postives = 42/68 (61.76%), Query Frame = 0
BLAST of MS006423 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 42.7 bits (99), Expect = 4.8e-04 Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 0
BLAST of MS006423 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 42.7 bits (99), Expect = 4.8e-04 Identity = 25/82 (30.49%), Postives = 45/82 (54.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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