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MS006415 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTATATACCATTACTAATGATTTTTGTGAGCACCTCCCTGTGGCAGCTGCTGCAACTTCTTCTAACGCCGCCGCCGCCGGGGCATTATGGGCCGAAGAAGAAACCTTAGTTCCTTTGTTCCATGAATTTGGTCTCGACCAAACGTCGTCGTATCCTCACCCTCACCACCACGTGGCATTGCCGCATCAGCACGAACTTGACAATATGGGCAGCGGCGGCGGCGGCGCCATTTCAGCGGCTGGGTCTCAAAACCTGTGCCTCGGATACCCACAGCCACCCGATAATCAGTTTCATGAATTTGGAGAGCAGGATGCCTTCGGTTTCGGCTTCGGTTTGCTTCCACATATCAAACCAATTTATCACCCACTTCCCACCGATAATTGGGTATCCTCTCCTCATTTTCTAAATTTCAAAATTGTAGGGATATATATTATTATTGTTTGCATTATTCCTGTAACAACACAAATTAAATTAATTTAACCCATGCTCTGAATCATATTGTTATAGGAAATTCAAAGCAGCAATAATCAAGTTCCTGCTACTGACCAAGACGACTCAAATAATATGAAGGTGGGCCGCTACTCTGAAGAAGTAAGAAAAGAAAGGATTCTCCGGTATTTGAAGAAAAGAAACCAAAGAAATTTCAACAAAACCATAAAGGTTTTCCTTTATTTTCCCCTCTCCATTGATAAATAATAAATTCTGGCTTGGTAATATATATATAGAATAATTAATAATATATAGAAGTGATTATGAAACACAATGATACAGTATGCGTGTCGGAAAACCTTAGCCGACAGAAGGATTCGAGTCCGTGGGAGATTTGCAAGGAACAACGAAGCATGTGATCAACAACTTAATCCAACAAAGAATAATAATAATGACGACACTACTGAGTCTACCCAATTATTATATAACCATCACGATCTCGCTCTTCAGGTACGAGGTATCCCTGTCACTATATATATATATATATATATGAACAACCTGCCTAAATTACTAATTAAATCGTCTCTAATCTTTTTTAACTATATATTTCTCATTTTACTATTTAATCTTCTCAAGCTTTCATTTTAACCCCTATTATATCAAAAACTCAACTCCCCCATGTTGGTTTCGTTTTTTTTTTTTGTTCACATCTAATTTTGCTAGTAGCTGACATATCCAAATACGTTGATAAAACAATACATTAAAATATTAAATTTCTATTCTTTTGTGAAATGATTTGATTGAGAATTTCAAAAGATAAAAAGATCAAATTGAGATAACCCTAAAAGATTTACCTAGCTTATTAGAAGAAGATTCCTCAACTATTCGAAACCCAGTGTTCAATGGATTATATATGGTAATATTTTCGGTTGATTGTGATTTTTTTGCAGATGAAAAAAGATGAGGAAGAATGGCTACAAGAGATTACAAGTCTAATGTACTTACCATATATTAGT CTATATACCATTACTAATGATTTTTGTGAGCACCTCCCTGTGGCAGCTGCTGCAACTTCTTCTAACGCCGCCGCCGCCGGGGCATTATGGGCCGAAGAAGAAACCTTAGTTCCTTTGTTCCATGAATTTGGTCTCGACCAAACGTCGTCGTATCCTCACCCTCACCACCACGTGGCATTGCCGCATCAGCACGAACTTGACAATATGGGCAGCGGCGGCGGCGGCGCCATTTCAGCGGCTGGGTCTCAAAACCTGTGCCTCGGATACCCACAGCCACCCGATAATCAGTTTCATGAATTTGGAGAGCAGGATGCCTTCGGTTTCGGCTTCGGTTTGCTTCCACATATCAAACCAATTTATCACCCACTTCCCACCGATAATTGGGAAATTCAAAGCAGCAATAATCAAGTTCCTGCTACTGACCAAGACGACTCAAATAATATGAAGGTGGGCCGCTACTCTGAAGAAGTAAGAAAAGAAAGGATTCTCCGGTATTTGAAGAAAAGAAACCAAAGAAATTTCAACAAAACCATAAAGTATGCGTGTCGGAAAACCTTAGCCGACAGAAGGATTCGAGTCCGTGGGAGATTTGCAAGGAACAACGAAGCATGTGATCAACAACTTAATCCAACAAAGAATAATAATAATGACGACACTACTGAGTCTACCCAATTATTATATAACCATCACGATCTCGCTCTTCAGATGAAAAAAGATGAGGAAGAATGGCTACAAGAGATTACAAGTCTAATGTACTTACCATATATTAGT CTATATACCATTACTAATGATTTTTGTGAGCACCTCCCTGTGGCAGCTGCTGCAACTTCTTCTAACGCCGCCGCCGCCGGGGCATTATGGGCCGAAGAAGAAACCTTAGTTCCTTTGTTCCATGAATTTGGTCTCGACCAAACGTCGTCGTATCCTCACCCTCACCACCACGTGGCATTGCCGCATCAGCACGAACTTGACAATATGGGCAGCGGCGGCGGCGGCGCCATTTCAGCGGCTGGGTCTCAAAACCTGTGCCTCGGATACCCACAGCCACCCGATAATCAGTTTCATGAATTTGGAGAGCAGGATGCCTTCGGTTTCGGCTTCGGTTTGCTTCCACATATCAAACCAATTTATCACCCACTTCCCACCGATAATTGGGAAATTCAAAGCAGCAATAATCAAGTTCCTGCTACTGACCAAGACGACTCAAATAATATGAAGGTGGGCCGCTACTCTGAAGAAGTAAGAAAAGAAAGGATTCTCCGGTATTTGAAGAAAAGAAACCAAAGAAATTTCAACAAAACCATAAAGTATGCGTGTCGGAAAACCTTAGCCGACAGAAGGATTCGAGTCCGTGGGAGATTTGCAAGGAACAACGAAGCATGTGATCAACAACTTAATCCAACAAAGAATAATAATAATGACGACACTACTGAGTCTACCCAATTATTATATAACCATCACGATCTCGCTCTTCAGATGAAAAAAGATGAGGAAGAATGGCTACAAGAGATTACAAGTCTAATGTACTTACCATATATTAGT LYTITNDFCEHLPVAAAATSSNAAAAGALWAEEETLVPLFHEFGLDQTSSYPHPHHHVALPHQHELDNMGSGGGGAISAAGSQNLCLGYPQPPDNQFHEFGEQDAFGFGFGLLPHIKPIYHPLPTDNWEIQSSNNQVPATDQDDSNNMKVGRYSEEVRKERILRYLKKRNQRNFNKTIKYACRKTLADRRIRVRGRFARNNEACDQQLNPTKNNNNDDTTESTQLLYNHHDLALQMKKDEEEWLQEITSLMYLPYIS Homology
BLAST of MS006415 vs. NCBI nr
Match: XP_023530352.1 (zinc finger protein CONSTANS-LIKE 5-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 248.4 bits (633), Expect = 6.5e-62 Identity = 150/271 (55.35%), Postives = 175/271 (64.58%), Query Frame = 0
BLAST of MS006415 vs. NCBI nr
Match: XP_022989100.1 (zinc finger protein CONSTANS-LIKE 5-like [Cucurbita maxima]) HSP 1 Score: 246.5 bits (628), Expect = 2.5e-61 Identity = 151/265 (56.98%), Postives = 173/265 (65.28%), Query Frame = 0
BLAST of MS006415 vs. NCBI nr
Match: KAG7023006.1 (Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 242.3 bits (617), Expect = 4.7e-60 Identity = 149/265 (56.23%), Postives = 173/265 (65.28%), Query Frame = 0
BLAST of MS006415 vs. NCBI nr
Match: XP_022930639.1 (zinc finger protein CONSTANS-LIKE 5-like [Cucurbita moschata]) HSP 1 Score: 240.4 bits (612), Expect = 1.8e-59 Identity = 149/265 (56.23%), Postives = 172/265 (64.91%), Query Frame = 0
BLAST of MS006415 vs. NCBI nr
Match: KAG6589308.1 (Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 239.6 bits (610), Expect = 3.0e-59 Identity = 147/265 (55.47%), Postives = 172/265 (64.91%), Query Frame = 0
BLAST of MS006415 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2) HSP 1 Score: 48.9 bits (115), Expect = 9.9e-05 Identity = 26/65 (40.00%), Postives = 38/65 (58.46%), Query Frame = 0
BLAST of MS006415 vs. ExPASy Swiss-Prot
Match: Q9SK53 (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 2.2e-04 Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 0
BLAST of MS006415 vs. ExPASy Swiss-Prot
Match: Q9FHH8 (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2 SV=2) HSP 1 Score: 47.4 bits (111), Expect = 2.9e-04 Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 0
BLAST of MS006415 vs. ExPASy Swiss-Prot
Match: O50055 (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 4.9e-04 Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of MS006415 vs. ExPASy Swiss-Prot
Match: Q39057 (Zinc finger protein CONSTANS OS=Arabidopsis thaliana OX=3702 GN=CO PE=1 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 4.9e-04 Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 0
BLAST of MS006415 vs. ExPASy TrEMBL
Match: A0A6J1JLF7 (zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita maxima OX=3661 GN=LOC111486274 PE=4 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61 Identity = 151/265 (56.98%), Postives = 173/265 (65.28%), Query Frame = 0
BLAST of MS006415 vs. ExPASy TrEMBL
Match: A0A6J1ES17 (zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437041 PE=4 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 8.6e-60 Identity = 149/265 (56.23%), Postives = 172/265 (64.91%), Query Frame = 0
BLAST of MS006415 vs. ExPASy TrEMBL
Match: A0A6J1I2H1 (uncharacterized protein LOC111468419 OS=Cucurbita maxima OX=3661 GN=LOC111468419 PE=4 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 9.2e-54 Identity = 142/254 (55.91%), Postives = 163/254 (64.17%), Query Frame = 0
BLAST of MS006415 vs. ExPASy TrEMBL
Match: A0A6J1GNF3 (uncharacterized protein LOC111455505 OS=Cucurbita moschata OX=3662 GN=LOC111455505 PE=4 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 3.3e-51 Identity = 139/254 (54.72%), Postives = 159/254 (62.60%), Query Frame = 0
BLAST of MS006415 vs. ExPASy TrEMBL
Match: A0A0A0K3I7 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237850 PE=4 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 2.8e-50 Identity = 137/270 (50.74%), Postives = 160/270 (59.26%), Query Frame = 0
BLAST of MS006415 vs. TAIR 10
Match: AT3G12890.1 (activator of spomin::LUC2 ) HSP 1 Score: 122.9 bits (307), Expect = 3.8e-28 Identity = 75/153 (49.02%), Postives = 95/153 (62.09%), Query Frame = 0
BLAST of MS006415 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein ) HSP 1 Score: 87.0 bits (214), Expect = 2.3e-17 Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 0
BLAST of MS006415 vs. TAIR 10
Match: AT1G63820.1 (CCT motif family protein ) HSP 1 Score: 82.0 bits (201), Expect = 7.5e-16 Identity = 48/81 (59.26%), Postives = 57/81 (70.37%), Query Frame = 0
BLAST of MS006415 vs. TAIR 10
Match: AT1G04500.1 (CCT motif family protein ) HSP 1 Score: 80.5 bits (197), Expect = 2.2e-15 Identity = 65/164 (39.63%), Postives = 84/164 (51.22%), Query Frame = 0
BLAST of MS006415 vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein ) HSP 1 Score: 80.1 bits (196), Expect = 2.9e-15 Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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